Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3361 and Pf6N2E2_3362 are separated by 10 nucleotides Pf6N2E2_3362 and Pf6N2E2_3363 are separated by 28 nucleotides Pf6N2E2_3363 and Pf6N2E2_3364 overlap by 4 nucleotides Pf6N2E2_3364 and Pf6N2E2_3365 are separated by 105 nucleotides
Pf6N2E2_3361 - FIG004454: RNA binding protein, at 3,892,505 to 3,892,813
_3361
Pf6N2E2_3362 - hypothetical protein, at 3,892,824 to 3,893,228
_3362
Pf6N2E2_3363 - Transcription elongation factor GreA, at 3,893,257 to 3,893,739
_3363
Pf6N2E2_3364 - Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), at 3,893,736 to 3,896,957
_3364
Pf6N2E2_3365 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 3,897,063 to 3,898,199
_3365
Position (kb)
3893
3894
3895
3896
3897 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3892.910 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.020 kb on - strand, within Pf6N2E2_3362 at 3893.421 kb on - strand, within Pf6N2E2_3363 at 3893.758 kb on - strand at 3893.758 kb on - strand at 3893.758 kb on - strand at 3894.299 kb on - strand, within Pf6N2E2_3364 at 3894.449 kb on - strand, within Pf6N2E2_3364 at 3894.449 kb on - strand, within Pf6N2E2_3364 at 3896.876 kb on - strand at 3897.611 kb on - strand, within Pf6N2E2_3365
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,892,910 - Pf6N2E2_3362 0.21 -3.4 3,892,910 - Pf6N2E2_3362 0.21 +1.3 3,893,020 - Pf6N2E2_3362 0.48 -0.2 3,893,020 - Pf6N2E2_3362 0.48 -0.6 3,893,020 - Pf6N2E2_3362 0.48 -1.1 3,893,020 - Pf6N2E2_3362 0.48 +0.2 3,893,020 - Pf6N2E2_3362 0.48 -1.0 3,893,421 - Pf6N2E2_3363 0.34 -0.3 3,893,758 - -3.0 3,893,758 - -0.5 3,893,758 - -3.2 3,894,299 - Pf6N2E2_3364 0.17 -1.3 3,894,449 - Pf6N2E2_3364 0.22 +0.5 3,894,449 - Pf6N2E2_3364 0.22 +0.5 3,896,876 - -1.3 3,897,611 - Pf6N2E2_3365 0.48 -1.6
Or see this region's nucleotide sequence