Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3193 and Pf6N2E2_3194 are separated by 310 nucleotides Pf6N2E2_3194 and Pf6N2E2_3195 are separated by 117 nucleotides
Pf6N2E2_3193 - Inositol-1-monophosphatase (EC 3.1.3.25), at 3,686,541 to 3,687,359
_3193
Pf6N2E2_3194 - probable exported protein YPO1624, at 3,687,670 to 3,688,218
_3194
Pf6N2E2_3195 - Protein-export membrane protein SecF (TC 3.A.5.1.1), at 3,688,336 to 3,689,250
_3195
Position (kb)
3687
3688
3689 Strain fitness (log2 ratio)
-2
-1
0
1 at 3687.358 kb on - strand at 3687.435 kb on + strand at 3687.616 kb on - strand at 3687.783 kb on - strand, within Pf6N2E2_3194 at 3687.783 kb on - strand, within Pf6N2E2_3194 at 3687.795 kb on - strand, within Pf6N2E2_3194 at 3687.799 kb on + strand, within Pf6N2E2_3194 at 3687.799 kb on + strand, within Pf6N2E2_3194 at 3687.800 kb on - strand, within Pf6N2E2_3194 at 3687.800 kb on - strand, within Pf6N2E2_3194 at 3687.800 kb on - strand, within Pf6N2E2_3194 at 3687.800 kb on - strand, within Pf6N2E2_3194 at 3687.854 kb on + strand, within Pf6N2E2_3194 at 3687.854 kb on + strand, within Pf6N2E2_3194 at 3687.854 kb on + strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.855 kb on - strand, within Pf6N2E2_3194 at 3687.899 kb on + strand, within Pf6N2E2_3194 at 3688.108 kb on + strand, within Pf6N2E2_3194 at 3688.108 kb on + strand, within Pf6N2E2_3194 at 3688.109 kb on - strand, within Pf6N2E2_3194 at 3688.109 kb on - strand, within Pf6N2E2_3194 at 3688.109 kb on - strand, within Pf6N2E2_3194 at 3688.109 kb on - strand, within Pf6N2E2_3194 at 3688.135 kb on + strand, within Pf6N2E2_3194 at 3688.136 kb on - strand, within Pf6N2E2_3194 at 3688.145 kb on + strand, within Pf6N2E2_3194 at 3688.145 kb on + strand, within Pf6N2E2_3194 at 3688.145 kb on + strand, within Pf6N2E2_3194 at 3688.145 kb on + strand, within Pf6N2E2_3194 at 3688.146 kb on - strand, within Pf6N2E2_3194 at 3688.171 kb on + strand at 3688.171 kb on + strand at 3688.171 kb on + strand at 3688.247 kb on + strand at 3688.247 kb on + strand at 3688.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,687,358 - +0.9 3,687,435 + -1.6 3,687,616 - +0.6 3,687,783 - Pf6N2E2_3194 0.21 -0.4 3,687,783 - Pf6N2E2_3194 0.21 -0.8 3,687,795 - Pf6N2E2_3194 0.23 +0.3 3,687,799 + Pf6N2E2_3194 0.23 +0.8 3,687,799 + Pf6N2E2_3194 0.23 -1.0 3,687,800 - Pf6N2E2_3194 0.24 -1.6 3,687,800 - Pf6N2E2_3194 0.24 -2.0 3,687,800 - Pf6N2E2_3194 0.24 -0.1 3,687,800 - Pf6N2E2_3194 0.24 +0.2 3,687,854 + Pf6N2E2_3194 0.34 -1.2 3,687,854 + Pf6N2E2_3194 0.34 -0.2 3,687,854 + Pf6N2E2_3194 0.34 -0.2 3,687,855 - Pf6N2E2_3194 0.34 +0.4 3,687,855 - Pf6N2E2_3194 0.34 +0.3 3,687,855 - Pf6N2E2_3194 0.34 +0.3 3,687,855 - Pf6N2E2_3194 0.34 -0.7 3,687,855 - Pf6N2E2_3194 0.34 -0.2 3,687,855 - Pf6N2E2_3194 0.34 -0.2 3,687,899 + Pf6N2E2_3194 0.42 -0.6 3,688,108 + Pf6N2E2_3194 0.80 +0.3 3,688,108 + Pf6N2E2_3194 0.80 +0.5 3,688,109 - Pf6N2E2_3194 0.80 -1.0 3,688,109 - Pf6N2E2_3194 0.80 -0.8 3,688,109 - Pf6N2E2_3194 0.80 -0.8 3,688,109 - Pf6N2E2_3194 0.80 -0.1 3,688,135 + Pf6N2E2_3194 0.85 -1.6 3,688,136 - Pf6N2E2_3194 0.85 -1.6 3,688,145 + Pf6N2E2_3194 0.87 -0.8 3,688,145 + Pf6N2E2_3194 0.87 -1.4 3,688,145 + Pf6N2E2_3194 0.87 -0.2 3,688,145 + Pf6N2E2_3194 0.87 -0.0 3,688,146 - Pf6N2E2_3194 0.87 +0.3 3,688,171 + +0.3 3,688,171 + +1.2 3,688,171 + -1.3 3,688,247 + +0.3 3,688,247 + +0.2 3,688,248 - -0.2
Or see this region's nucleotide sequence