Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3173 and Pf6N2E2_3174 are separated by 270 nucleotides Pf6N2E2_3174 and Pf6N2E2_3175 are separated by 134 nucleotides
Pf6N2E2_3173 - Aspartate aminotransferase (EC 2.6.1.1), at 3,668,286 to 3,669,434
_3173
Pf6N2E2_3174 - GTP-binding protein EngA, at 3,669,705 to 3,671,177
_3174
Pf6N2E2_3175 - Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB), at 3,671,312 to 3,672,463
_3175
Position (kb)
3669
3670
3671
3672 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3668.740 kb on + strand, within Pf6N2E2_3173 at 3668.741 kb on - strand, within Pf6N2E2_3173 at 3668.741 kb on - strand, within Pf6N2E2_3173 at 3668.741 kb on - strand, within Pf6N2E2_3173 at 3668.839 kb on + strand, within Pf6N2E2_3173 at 3668.860 kb on + strand, within Pf6N2E2_3173 at 3668.860 kb on + strand, within Pf6N2E2_3173 at 3668.860 kb on + strand, within Pf6N2E2_3173 at 3668.860 kb on + strand, within Pf6N2E2_3173 at 3668.861 kb on - strand, within Pf6N2E2_3173 at 3668.861 kb on - strand, within Pf6N2E2_3173 at 3668.861 kb on - strand, within Pf6N2E2_3173 at 3668.861 kb on - strand, within Pf6N2E2_3173 at 3668.861 kb on - strand, within Pf6N2E2_3173 at 3668.861 kb on - strand at 3669.070 kb on + strand, within Pf6N2E2_3173 at 3669.070 kb on + strand, within Pf6N2E2_3173 at 3669.070 kb on + strand, within Pf6N2E2_3173 at 3669.070 kb on + strand, within Pf6N2E2_3173 at 3669.070 kb on + strand, within Pf6N2E2_3173 at 3669.071 kb on - strand, within Pf6N2E2_3173 at 3669.071 kb on - strand, within Pf6N2E2_3173 at 3669.071 kb on - strand, within Pf6N2E2_3173 at 3669.071 kb on - strand, within Pf6N2E2_3173 at 3669.079 kb on + strand, within Pf6N2E2_3173 at 3669.079 kb on + strand, within Pf6N2E2_3173 at 3669.079 kb on + strand, within Pf6N2E2_3173 at 3669.080 kb on - strand, within Pf6N2E2_3173 at 3669.080 kb on - strand, within Pf6N2E2_3173 at 3669.080 kb on - strand, within Pf6N2E2_3173 at 3669.083 kb on + strand, within Pf6N2E2_3173 at 3669.083 kb on + strand, within Pf6N2E2_3173 at 3669.083 kb on + strand, within Pf6N2E2_3173 at 3669.084 kb on - strand, within Pf6N2E2_3173 at 3669.084 kb on - strand, within Pf6N2E2_3173 at 3669.203 kb on - strand, within Pf6N2E2_3173 at 3669.266 kb on - strand, within Pf6N2E2_3173 at 3669.398 kb on + strand at 3669.398 kb on + strand at 3669.398 kb on + strand at 3669.398 kb on + strand at 3669.398 kb on + strand at 3669.398 kb on + strand at 3669.489 kb on + strand at 3671.208 kb on - strand at 3671.308 kb on - strand at 3671.308 kb on - strand at 3671.308 kb on - strand at 3671.314 kb on - strand at 3671.314 kb on - strand at 3671.314 kb on - strand at 3671.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,668,740 + Pf6N2E2_3173 0.40 -0.3 3,668,741 - Pf6N2E2_3173 0.40 +0.2 3,668,741 - Pf6N2E2_3173 0.40 -0.1 3,668,741 - Pf6N2E2_3173 0.40 +0.9 3,668,839 + Pf6N2E2_3173 0.48 +0.9 3,668,860 + Pf6N2E2_3173 0.50 +0.4 3,668,860 + Pf6N2E2_3173 0.50 +0.6 3,668,860 + Pf6N2E2_3173 0.50 -0.7 3,668,860 + Pf6N2E2_3173 0.50 -0.6 3,668,861 - Pf6N2E2_3173 0.50 -0.6 3,668,861 - Pf6N2E2_3173 0.50 +0.6 3,668,861 - Pf6N2E2_3173 0.50 +0.1 3,668,861 - Pf6N2E2_3173 0.50 -0.1 3,668,861 - Pf6N2E2_3173 0.50 +0.5 3,668,861 - +2.4 3,669,070 + Pf6N2E2_3173 0.68 -0.5 3,669,070 + Pf6N2E2_3173 0.68 +0.0 3,669,070 + Pf6N2E2_3173 0.68 +0.2 3,669,070 + Pf6N2E2_3173 0.68 +1.1 3,669,070 + Pf6N2E2_3173 0.68 -0.2 3,669,071 - Pf6N2E2_3173 0.68 -1.6 3,669,071 - Pf6N2E2_3173 0.68 +1.5 3,669,071 - Pf6N2E2_3173 0.68 -1.0 3,669,071 - Pf6N2E2_3173 0.68 -3.5 3,669,079 + Pf6N2E2_3173 0.69 -0.5 3,669,079 + Pf6N2E2_3173 0.69 +1.6 3,669,079 + Pf6N2E2_3173 0.69 -0.2 3,669,080 - Pf6N2E2_3173 0.69 +0.6 3,669,080 - Pf6N2E2_3173 0.69 -0.2 3,669,080 - Pf6N2E2_3173 0.69 +1.4 3,669,083 + Pf6N2E2_3173 0.69 -0.3 3,669,083 + Pf6N2E2_3173 0.69 +0.4 3,669,083 + Pf6N2E2_3173 0.69 -1.1 3,669,084 - Pf6N2E2_3173 0.69 +0.7 3,669,084 - Pf6N2E2_3173 0.69 +1.1 3,669,203 - Pf6N2E2_3173 0.80 +1.1 3,669,266 - Pf6N2E2_3173 0.85 +0.6 3,669,398 + -0.2 3,669,398 + -1.0 3,669,398 + -1.0 3,669,398 + +0.0 3,669,398 + -0.4 3,669,398 + +0.6 3,669,489 + +1.0 3,671,208 - -0.8 3,671,308 - -0.1 3,671,308 - -0.7 3,671,308 - -0.9 3,671,314 - -0.8 3,671,314 - +0.1 3,671,314 - +1.0 3,671,314 - -0.9
Or see this region's nucleotide sequence