Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3159

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3158 and Pf6N2E2_3159 are separated by 736 nucleotidesPf6N2E2_3159 and Pf6N2E2_3160 overlap by 1 nucleotides Pf6N2E2_3158 - tRNA (5-methoxyuridine) 34 synthase, at 3,651,964 to 3,652,920 _3158 Pf6N2E2_3159 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 3,653,657 to 3,654,154 _3159 Pf6N2E2_3160 - Multicopper oxidase, at 3,654,154 to 3,655,530 _3160 Position (kb) 3653 3654 3655Strain fitness (log2 ratio) -2 -1 0 1 2at 3652.822 kb on + strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.823 kb on - strand, within Pf6N2E2_3158at 3652.919 kb on - strandat 3652.933 kb on + strandat 3652.934 kb on - strandat 3652.945 kb on + strandat 3652.945 kb on + strandat 3652.945 kb on + strandat 3652.946 kb on - strandat 3652.946 kb on - strandat 3652.946 kb on - strandat 3653.483 kb on + strandat 3653.602 kb on + strandat 3654.282 kb on - strandat 3654.282 kb on - strandat 3654.282 kb on - strandat 3654.399 kb on - strand, within Pf6N2E2_3160at 3654.747 kb on - strand, within Pf6N2E2_3160at 3654.795 kb on - strand, within Pf6N2E2_3160at 3654.795 kb on - strand, within Pf6N2E2_3160at 3654.795 kb on - strand, within Pf6N2E2_3160at 3654.795 kb on - strand, within Pf6N2E2_3160at 3654.826 kb on - strand, within Pf6N2E2_3160at 3654.826 kb on - strand, within Pf6N2E2_3160at 3654.831 kb on - strand, within Pf6N2E2_3160at 3654.831 kb on - strand, within Pf6N2E2_3160at 3654.831 kb on - strand, within Pf6N2E2_3160at 3654.831 kb on - strand, within Pf6N2E2_3160at 3654.831 kb on - strand, within Pf6N2E2_3160at 3655.032 kb on - strand, within Pf6N2E2_3160at 3655.032 kb on - strand, within Pf6N2E2_3160at 3655.032 kb on - strand, within Pf6N2E2_3160at 3655.032 kb on - strand, within Pf6N2E2_3160at 3655.032 kb on - strand, within Pf6N2E2_3160at 3655.122 kb on - strand, within Pf6N2E2_3160

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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3,652,822 + Pf6N2E2_3158 0.90 +0.6
3,652,823 - Pf6N2E2_3158 0.90 +0.3
3,652,823 - Pf6N2E2_3158 0.90 +0.5
3,652,823 - Pf6N2E2_3158 0.90 +0.9
3,652,823 - Pf6N2E2_3158 0.90 -0.3
3,652,823 - Pf6N2E2_3158 0.90 +0.1
3,652,823 - Pf6N2E2_3158 0.90 +0.3
3,652,823 - Pf6N2E2_3158 0.90 -0.8
3,652,919 - -0.5
3,652,933 + -0.8
3,652,934 - -2.5
3,652,945 + -0.6
3,652,945 + +1.0
3,652,945 + -0.6
3,652,946 - -0.6
3,652,946 - -1.2
3,652,946 - +0.0
3,653,483 + +0.7
3,653,602 + +0.4
3,654,282 - -0.2
3,654,282 - +0.1
3,654,282 - +0.2
3,654,399 - Pf6N2E2_3160 0.18 -0.5
3,654,747 - Pf6N2E2_3160 0.43 -1.3
3,654,795 - Pf6N2E2_3160 0.47 -0.5
3,654,795 - Pf6N2E2_3160 0.47 +0.7
3,654,795 - Pf6N2E2_3160 0.47 -0.2
3,654,795 - Pf6N2E2_3160 0.47 +0.7
3,654,826 - Pf6N2E2_3160 0.49 -0.9
3,654,826 - Pf6N2E2_3160 0.49 -0.1
3,654,831 - Pf6N2E2_3160 0.49 +0.0
3,654,831 - Pf6N2E2_3160 0.49 +0.4
3,654,831 - Pf6N2E2_3160 0.49 +0.9
3,654,831 - Pf6N2E2_3160 0.49 +0.8
3,654,831 - Pf6N2E2_3160 0.49 +1.9
3,655,032 - Pf6N2E2_3160 0.64 +0.6
3,655,032 - Pf6N2E2_3160 0.64 +0.7
3,655,032 - Pf6N2E2_3160 0.64 -0.2
3,655,032 - Pf6N2E2_3160 0.64 -1.7
3,655,032 - Pf6N2E2_3160 0.64 +0.9
3,655,122 - Pf6N2E2_3160 0.70 +0.7

Or see this region's nucleotide sequence