Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3073 and Pf6N2E2_3074 are separated by 516 nucleotides Pf6N2E2_3074 and Pf6N2E2_3075 are separated by 156 nucleotides
Pf6N2E2_3073 - N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17), at 3,560,269 to 3,561,468
_3073
Pf6N2E2_3074 - FIG00960973: hypothetical protein, at 3,561,985 to 3,562,287
_3074
Pf6N2E2_3075 - Na+/H+ antiporter, at 3,562,444 to 3,564,090
_3075
Position (kb)
3561
3562
3563 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3561.088 kb on + strand, within Pf6N2E2_3073 at 3561.088 kb on + strand, within Pf6N2E2_3073 at 3561.158 kb on + strand, within Pf6N2E2_3073 at 3561.158 kb on + strand, within Pf6N2E2_3073 at 3561.159 kb on - strand, within Pf6N2E2_3073 at 3561.159 kb on - strand, within Pf6N2E2_3073 at 3561.253 kb on + strand, within Pf6N2E2_3073 at 3561.253 kb on + strand, within Pf6N2E2_3073 at 3561.253 kb on + strand, within Pf6N2E2_3073 at 3561.253 kb on + strand, within Pf6N2E2_3073 at 3561.254 kb on - strand, within Pf6N2E2_3073 at 3561.254 kb on - strand, within Pf6N2E2_3073 at 3561.340 kb on + strand, within Pf6N2E2_3073 at 3561.340 kb on + strand, within Pf6N2E2_3073 at 3561.340 kb on + strand, within Pf6N2E2_3073 at 3561.576 kb on - strand at 3561.661 kb on + strand at 3561.661 kb on + strand at 3561.661 kb on + strand at 3561.781 kb on + strand at 3561.781 kb on + strand at 3561.781 kb on + strand at 3561.781 kb on + strand at 3561.782 kb on - strand at 3561.782 kb on - strand at 3561.785 kb on + strand at 3561.785 kb on + strand at 3561.785 kb on + strand at 3561.785 kb on + strand at 3561.785 kb on + strand at 3561.786 kb on - strand at 3561.786 kb on - strand at 3561.845 kb on + strand at 3561.846 kb on - strand at 3561.892 kb on + strand at 3561.892 kb on + strand at 3561.970 kb on + strand at 3561.970 kb on + strand at 3562.250 kb on + strand, within Pf6N2E2_3074 at 3562.250 kb on + strand, within Pf6N2E2_3074 at 3562.285 kb on + strand at 3562.286 kb on - strand at 3562.431 kb on - strand at 3562.431 kb on - strand at 3562.445 kb on + strand at 3562.445 kb on + strand at 3562.445 kb on + strand at 3562.445 kb on + strand at 3562.445 kb on + strand at 3562.446 kb on - strand at 3562.446 kb on - strand at 3562.449 kb on + strand at 3562.449 kb on + strand at 3562.449 kb on + strand at 3562.449 kb on + strand at 3562.450 kb on - strand at 3562.450 kb on - strand at 3562.542 kb on - strand at 3562.542 kb on - strand at 3562.951 kb on + strand, within Pf6N2E2_3075 at 3562.951 kb on + strand, within Pf6N2E2_3075 at 3562.951 kb on + strand, within Pf6N2E2_3075 at 3562.951 kb on + strand, within Pf6N2E2_3075 at 3562.951 kb on + strand, within Pf6N2E2_3075 at 3563.165 kb on + strand, within Pf6N2E2_3075 at 3563.165 kb on + strand, within Pf6N2E2_3075 at 3563.166 kb on - strand, within Pf6N2E2_3075
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,561,088 + Pf6N2E2_3073 0.68 -0.6 3,561,088 + Pf6N2E2_3073 0.68 -0.1 3,561,158 + Pf6N2E2_3073 0.74 -0.6 3,561,158 + Pf6N2E2_3073 0.74 -2.6 3,561,159 - Pf6N2E2_3073 0.74 +0.1 3,561,159 - Pf6N2E2_3073 0.74 -1.6 3,561,253 + Pf6N2E2_3073 0.82 +0.5 3,561,253 + Pf6N2E2_3073 0.82 -0.1 3,561,253 + Pf6N2E2_3073 0.82 +0.3 3,561,253 + Pf6N2E2_3073 0.82 -1.1 3,561,254 - Pf6N2E2_3073 0.82 -0.6 3,561,254 - Pf6N2E2_3073 0.82 +0.4 3,561,340 + Pf6N2E2_3073 0.89 -0.6 3,561,340 + Pf6N2E2_3073 0.89 -0.6 3,561,340 + Pf6N2E2_3073 0.89 +0.8 3,561,576 - -0.2 3,561,661 + +0.6 3,561,661 + +0.4 3,561,661 + -1.7 3,561,781 + +1.3 3,561,781 + +0.8 3,561,781 + -0.5 3,561,781 + +0.4 3,561,782 - +2.5 3,561,782 - +0.4 3,561,785 + -0.6 3,561,785 + +1.6 3,561,785 + -0.6 3,561,785 + +0.9 3,561,785 + +1.0 3,561,786 - -1.9 3,561,786 - +0.2 3,561,845 + -0.3 3,561,846 - -0.6 3,561,892 + +0.4 3,561,892 + +0.9 3,561,970 + +1.2 3,561,970 + +1.2 3,562,250 + Pf6N2E2_3074 0.87 -2.3 3,562,250 + Pf6N2E2_3074 0.87 -0.5 3,562,285 + -1.1 3,562,286 - +0.7 3,562,431 - +0.1 3,562,431 - +0.3 3,562,445 + -1.3 3,562,445 + +0.2 3,562,445 + +0.7 3,562,445 + +0.2 3,562,445 + +0.8 3,562,446 - -0.2 3,562,446 - +0.6 3,562,449 + -0.8 3,562,449 + -0.2 3,562,449 + +0.9 3,562,449 + -0.6 3,562,450 - +0.7 3,562,450 - -0.2 3,562,542 - +1.0 3,562,542 - -0.7 3,562,951 + Pf6N2E2_3075 0.31 +0.9 3,562,951 + Pf6N2E2_3075 0.31 +0.3 3,562,951 + Pf6N2E2_3075 0.31 +2.4 3,562,951 + Pf6N2E2_3075 0.31 +0.7 3,562,951 + Pf6N2E2_3075 0.31 -0.5 3,563,165 + Pf6N2E2_3075 0.44 +1.0 3,563,165 + Pf6N2E2_3075 0.44 -0.3 3,563,166 - Pf6N2E2_3075 0.44 -0.1
Or see this region's nucleotide sequence