Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2909

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2908 and Pf6N2E2_2909 are separated by 71 nucleotidesPf6N2E2_2909 and Pf6N2E2_2910 are separated by 148 nucleotides Pf6N2E2_2908 - Arginine deiminase (EC 3.5.3.6), at 3,400,547 to 3,401,803 _2908 Pf6N2E2_2909 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 3,401,875 to 3,402,885 _2909 Pf6N2E2_2910 - Carbamate kinase (EC 2.7.2.2), at 3,403,034 to 3,403,963 _2910 Position (kb) 3401 3402 3403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3401.060 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.087 kb on + strand, within Pf6N2E2_2908at 3401.088 kb on - strand, within Pf6N2E2_2908at 3401.088 kb on - strand, within Pf6N2E2_2908at 3401.132 kb on + strand, within Pf6N2E2_2908at 3401.133 kb on - strand, within Pf6N2E2_2908at 3401.628 kb on + strand, within Pf6N2E2_2908at 3401.628 kb on + strand, within Pf6N2E2_2908at 3401.629 kb on - strand, within Pf6N2E2_2908at 3401.629 kb on - strand, within Pf6N2E2_2908at 3401.675 kb on + strand, within Pf6N2E2_2908at 3401.872 kb on - strandat 3401.980 kb on + strand, within Pf6N2E2_2909at 3402.103 kb on + strand, within Pf6N2E2_2909at 3402.103 kb on + strand, within Pf6N2E2_2909at 3402.103 kb on + strand, within Pf6N2E2_2909at 3402.103 kb on + strand, within Pf6N2E2_2909at 3402.103 kb on + strand, within Pf6N2E2_2909at 3402.104 kb on - strand, within Pf6N2E2_2909at 3402.104 kb on - strand, within Pf6N2E2_2909at 3402.104 kb on - strand, within Pf6N2E2_2909at 3402.193 kb on + strand, within Pf6N2E2_2909at 3402.349 kb on + strand, within Pf6N2E2_2909at 3402.350 kb on - strand, within Pf6N2E2_2909at 3402.355 kb on + strand, within Pf6N2E2_2909at 3402.356 kb on - strand, within Pf6N2E2_2909at 3402.374 kb on - strand, within Pf6N2E2_2909at 3402.374 kb on - strand, within Pf6N2E2_2909at 3402.374 kb on - strand, within Pf6N2E2_2909at 3403.223 kb on + strand, within Pf6N2E2_2910at 3403.223 kb on + strand, within Pf6N2E2_2910at 3403.287 kb on - strand, within Pf6N2E2_2910at 3403.416 kb on - strand, within Pf6N2E2_2910at 3403.604 kb on + strand, within Pf6N2E2_2910at 3403.605 kb on - strand, within Pf6N2E2_2910at 3403.605 kb on - strand, within Pf6N2E2_2910at 3403.827 kb on + strand, within Pf6N2E2_2910at 3403.827 kb on + strand, within Pf6N2E2_2910

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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3,401,060 + Pf6N2E2_2908 0.41 -0.7
3,401,087 + Pf6N2E2_2908 0.43 +0.2
3,401,087 + Pf6N2E2_2908 0.43 +0.1
3,401,087 + Pf6N2E2_2908 0.43 -0.3
3,401,087 + Pf6N2E2_2908 0.43 -1.4
3,401,087 + Pf6N2E2_2908 0.43 +0.8
3,401,088 - Pf6N2E2_2908 0.43 -3.2
3,401,088 - Pf6N2E2_2908 0.43 -0.2
3,401,132 + Pf6N2E2_2908 0.47 +1.5
3,401,133 - Pf6N2E2_2908 0.47 -0.2
3,401,628 + Pf6N2E2_2908 0.86 +1.5
3,401,628 + Pf6N2E2_2908 0.86 +1.2
3,401,629 - Pf6N2E2_2908 0.86 +0.1
3,401,629 - Pf6N2E2_2908 0.86 +0.0
3,401,675 + Pf6N2E2_2908 0.90 -0.5
3,401,872 - +1.2
3,401,980 + Pf6N2E2_2909 0.10 -0.1
3,402,103 + Pf6N2E2_2909 0.23 +0.5
3,402,103 + Pf6N2E2_2909 0.23 +0.6
3,402,103 + Pf6N2E2_2909 0.23 -0.1
3,402,103 + Pf6N2E2_2909 0.23 +1.7
3,402,103 + Pf6N2E2_2909 0.23 +0.4
3,402,104 - Pf6N2E2_2909 0.23 +0.3
3,402,104 - Pf6N2E2_2909 0.23 -0.3
3,402,104 - Pf6N2E2_2909 0.23 +0.7
3,402,193 + Pf6N2E2_2909 0.31 +2.6
3,402,349 + Pf6N2E2_2909 0.47 -1.4
3,402,350 - Pf6N2E2_2909 0.47 +0.7
3,402,355 + Pf6N2E2_2909 0.47 -1.6
3,402,356 - Pf6N2E2_2909 0.48 +1.6
3,402,374 - Pf6N2E2_2909 0.49 +0.8
3,402,374 - Pf6N2E2_2909 0.49 -0.1
3,402,374 - Pf6N2E2_2909 0.49 +0.7
3,403,223 + Pf6N2E2_2910 0.20 -1.7
3,403,223 + Pf6N2E2_2910 0.20 +1.3
3,403,287 - Pf6N2E2_2910 0.27 +0.1
3,403,416 - Pf6N2E2_2910 0.41 -0.0
3,403,604 + Pf6N2E2_2910 0.61 -0.4
3,403,605 - Pf6N2E2_2910 0.61 +0.4
3,403,605 - Pf6N2E2_2910 0.61 +1.7
3,403,827 + Pf6N2E2_2910 0.85 -0.4
3,403,827 + Pf6N2E2_2910 0.85 -0.2

Or see this region's nucleotide sequence