Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2886

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2885 and Pf6N2E2_2886 are separated by 187 nucleotidesPf6N2E2_2886 and Pf6N2E2_2887 are separated by 61 nucleotides Pf6N2E2_2885 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 3,372,318 to 3,373,787 _2885 Pf6N2E2_2886 - Phosphogluconate repressor HexR, RpiR family, at 3,373,975 to 3,374,844 _2886 Pf6N2E2_2887 - Aldose 1-epimerase, at 3,374,906 to 3,375,760 _2887 Position (kb) 3373 3374 3375Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3373.181 kb on - strand, within Pf6N2E2_2885at 3373.262 kb on - strand, within Pf6N2E2_2885at 3373.277 kb on - strand, within Pf6N2E2_2885at 3373.277 kb on - strand, within Pf6N2E2_2885at 3373.281 kb on - strand, within Pf6N2E2_2885at 3373.281 kb on - strand, within Pf6N2E2_2885at 3373.421 kb on - strand, within Pf6N2E2_2885at 3373.421 kb on - strand, within Pf6N2E2_2885at 3373.445 kb on - strand, within Pf6N2E2_2885at 3373.586 kb on - strand, within Pf6N2E2_2885at 3373.586 kb on - strand, within Pf6N2E2_2885at 3373.586 kb on - strand, within Pf6N2E2_2885at 3373.586 kb on - strand, within Pf6N2E2_2885at 3373.837 kb on - strandat 3373.859 kb on - strandat 3373.862 kb on - strandat 3373.920 kb on - strandat 3373.920 kb on - strandat 3373.925 kb on - strandat 3373.945 kb on - strandat 3373.963 kb on + strandat 3373.964 kb on - strandat 3373.974 kb on + strandat 3373.974 kb on + strandat 3373.974 kb on + strandat 3373.974 kb on + strandat 3373.975 kb on - strandat 3373.975 kb on - strandat 3373.975 kb on - strandat 3373.975 kb on - strandat 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.224 kb on + strand, within Pf6N2E2_2886at 3374.225 kb on - strand, within Pf6N2E2_2886at 3374.225 kb on - strand, within Pf6N2E2_2886at 3374.225 kb on - strand, within Pf6N2E2_2886at 3374.266 kb on + strand, within Pf6N2E2_2886at 3374.266 kb on + strand, within Pf6N2E2_2886at 3374.266 kb on + strand, within Pf6N2E2_2886at 3374.266 kb on + strand, within Pf6N2E2_2886at 3374.266 kb on + strand, within Pf6N2E2_2886at 3374.267 kb on - strand, within Pf6N2E2_2886at 3374.267 kb on - strand, within Pf6N2E2_2886at 3374.474 kb on + strand, within Pf6N2E2_2886at 3374.474 kb on + strand, within Pf6N2E2_2886at 3374.474 kb on + strand, within Pf6N2E2_2886at 3374.475 kb on - strand, within Pf6N2E2_2886at 3374.475 kb on - strand, within Pf6N2E2_2886at 3374.475 kb on - strand, within Pf6N2E2_2886at 3374.475 kb on - strand, within Pf6N2E2_2886at 3374.475 kb on - strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.682 kb on + strand, within Pf6N2E2_2886at 3374.683 kb on - strand, within Pf6N2E2_2886at 3374.683 kb on - strand, within Pf6N2E2_2886at 3374.683 kb on - strand, within Pf6N2E2_2886at 3374.683 kb on - strand, within Pf6N2E2_2886at 3374.683 kb on - strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.686 kb on + strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strandat 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.687 kb on - strand, within Pf6N2E2_2886at 3374.688 kb on + strand, within Pf6N2E2_2886at 3374.688 kb on + strand, within Pf6N2E2_2886at 3374.688 kb on + strand, within Pf6N2E2_2886at 3374.688 kb on + strand, within Pf6N2E2_2886at 3374.689 kb on - strand, within Pf6N2E2_2886at 3374.689 kb on - strand, within Pf6N2E2_2886at 3374.907 kb on + strandat 3375.251 kb on + strand, within Pf6N2E2_2887at 3375.280 kb on - strand, within Pf6N2E2_2887at 3375.513 kb on + strand, within Pf6N2E2_2887at 3375.513 kb on + strand, within Pf6N2E2_2887at 3375.514 kb on - strand, within Pf6N2E2_2887at 3375.514 kb on - strand, within Pf6N2E2_2887at 3375.514 kb on - strand, within Pf6N2E2_2887at 3375.744 kb on - strandat 3375.787 kb on + strandat 3375.787 kb on + strandat 3375.788 kb on - strandat 3375.788 kb on - strandat 3375.788 kb on - strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.795 kb on + strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.796 kb on - strandat 3375.799 kb on + strandat 3375.799 kb on + strandat 3375.799 kb on + strandat 3375.799 kb on + strandat 3375.799 kb on + strandat 3375.799 kb on + strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.800 kb on - strandat 3375.807 kb on + strandat 3375.807 kb on + strandat 3375.808 kb on - strandat 3375.808 kb on - strandat 3375.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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3,373,181 - Pf6N2E2_2885 0.59 -0.1
3,373,262 - Pf6N2E2_2885 0.64 +2.3
3,373,277 - Pf6N2E2_2885 0.65 -1.1
3,373,277 - Pf6N2E2_2885 0.65 -0.0
3,373,281 - Pf6N2E2_2885 0.66 +0.6
3,373,281 - Pf6N2E2_2885 0.66 -2.0
3,373,421 - Pf6N2E2_2885 0.75 +2.4
3,373,421 - Pf6N2E2_2885 0.75 +3.3
3,373,445 - Pf6N2E2_2885 0.77 -0.1
3,373,586 - Pf6N2E2_2885 0.86 +3.5
3,373,586 - Pf6N2E2_2885 0.86 +2.5
3,373,586 - Pf6N2E2_2885 0.86 +0.1
3,373,586 - Pf6N2E2_2885 0.86 +1.0
3,373,837 - +2.5
3,373,859 - +4.2
3,373,862 - +3.4
3,373,920 - +3.4
3,373,920 - +3.6
3,373,925 - +3.6
3,373,945 - +3.7
3,373,963 + +0.5
3,373,964 - +4.1
3,373,974 + +1.7
3,373,974 + +3.8
3,373,974 + +3.0
3,373,974 + +2.6
3,373,975 - +4.8
3,373,975 - +3.8
3,373,975 - +4.0
3,373,975 - +3.6
3,374,224 + Pf6N2E2_2886 0.29 +2.0
3,374,224 + Pf6N2E2_2886 0.29 +1.6
3,374,224 + Pf6N2E2_2886 0.29 +2.1
3,374,224 + Pf6N2E2_2886 0.29 +2.3
3,374,224 + Pf6N2E2_2886 0.29 +2.6
3,374,224 + Pf6N2E2_2886 0.29 +2.4
3,374,225 - Pf6N2E2_2886 0.29 +4.4
3,374,225 - Pf6N2E2_2886 0.29 +3.3
3,374,225 - Pf6N2E2_2886 0.29 +4.3
3,374,266 + Pf6N2E2_2886 0.33 +3.9
3,374,266 + Pf6N2E2_2886 0.33 +2.8
3,374,266 + Pf6N2E2_2886 0.33 +1.8
3,374,266 + Pf6N2E2_2886 0.33 +2.7
3,374,266 + Pf6N2E2_2886 0.33 +1.7
3,374,267 - Pf6N2E2_2886 0.34 +2.6
3,374,267 - Pf6N2E2_2886 0.34 +3.1
3,374,474 + Pf6N2E2_2886 0.57 +3.4
3,374,474 + Pf6N2E2_2886 0.57 +2.7
3,374,474 + Pf6N2E2_2886 0.57 +3.9
3,374,475 - Pf6N2E2_2886 0.57 +3.7
3,374,475 - Pf6N2E2_2886 0.57 +4.0
3,374,475 - Pf6N2E2_2886 0.57 +2.8
3,374,475 - Pf6N2E2_2886 0.57 +3.3
3,374,475 - Pf6N2E2_2886 0.57 +4.3
3,374,682 + Pf6N2E2_2886 0.81 +2.9
3,374,682 + Pf6N2E2_2886 0.81 +2.8
3,374,682 + Pf6N2E2_2886 0.81 +2.7
3,374,682 + Pf6N2E2_2886 0.81 +4.9
3,374,682 + Pf6N2E2_2886 0.81 +2.6
3,374,682 + Pf6N2E2_2886 0.81 +2.5
3,374,682 + Pf6N2E2_2886 0.81 +3.2
3,374,682 + Pf6N2E2_2886 0.81 +3.5
3,374,682 + Pf6N2E2_2886 0.81 +2.0
3,374,683 - Pf6N2E2_2886 0.81 +4.1
3,374,683 - Pf6N2E2_2886 0.81 +3.0
3,374,683 - Pf6N2E2_2886 0.81 +3.1
3,374,683 - Pf6N2E2_2886 0.81 +3.6
3,374,683 - Pf6N2E2_2886 0.81 +3.3
3,374,686 + Pf6N2E2_2886 0.82 +1.9
3,374,686 + Pf6N2E2_2886 0.82 +3.8
3,374,686 + Pf6N2E2_2886 0.82 +3.0
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +3.1
3,374,686 + Pf6N2E2_2886 0.82 +3.7
3,374,686 + Pf6N2E2_2886 0.82 +2.2
3,374,686 + Pf6N2E2_2886 0.82 +2.8
3,374,686 + Pf6N2E2_2886 0.82 +2.3
3,374,686 + Pf6N2E2_2886 0.82 +2.4
3,374,686 + Pf6N2E2_2886 0.82 +2.3
3,374,686 + Pf6N2E2_2886 0.82 +2.8
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +2.7
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +2.9
3,374,686 + Pf6N2E2_2886 0.82 +2.2
3,374,686 + Pf6N2E2_2886 0.82 +3.3
3,374,686 + Pf6N2E2_2886 0.82 +2.8
3,374,686 + Pf6N2E2_2886 0.82 +2.7
3,374,686 + Pf6N2E2_2886 0.82 +1.2
3,374,686 + Pf6N2E2_2886 0.82 +3.0
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +3.5
3,374,686 + Pf6N2E2_2886 0.82 +3.4
3,374,686 + Pf6N2E2_2886 0.82 +2.4
3,374,686 + Pf6N2E2_2886 0.82 +3.2
3,374,686 + Pf6N2E2_2886 0.82 +3.1
3,374,686 + Pf6N2E2_2886 0.82 +2.2
3,374,687 - Pf6N2E2_2886 0.82 +3.6
3,374,687 - Pf6N2E2_2886 0.82 +2.7
3,374,687 - Pf6N2E2_2886 0.82 +3.7
3,374,687 - +2.2
3,374,687 - Pf6N2E2_2886 0.82 +3.3
3,374,687 - Pf6N2E2_2886 0.82 +3.0
3,374,687 - Pf6N2E2_2886 0.82 +3.6
3,374,687 - Pf6N2E2_2886 0.82 +3.0
3,374,687 - Pf6N2E2_2886 0.82 +3.4
3,374,687 - Pf6N2E2_2886 0.82 +4.0
3,374,687 - Pf6N2E2_2886 0.82 +3.4
3,374,687 - Pf6N2E2_2886 0.82 +3.1
3,374,687 - Pf6N2E2_2886 0.82 +3.6
3,374,687 - Pf6N2E2_2886 0.82 +3.4
3,374,687 - Pf6N2E2_2886 0.82 +2.6
3,374,687 - Pf6N2E2_2886 0.82 +3.6
3,374,687 - Pf6N2E2_2886 0.82 +4.3
3,374,687 - Pf6N2E2_2886 0.82 +3.5
3,374,687 - Pf6N2E2_2886 0.82 +2.8
3,374,687 - Pf6N2E2_2886 0.82 +2.9
3,374,687 - Pf6N2E2_2886 0.82 +3.8
3,374,687 - Pf6N2E2_2886 0.82 +3.9
3,374,687 - Pf6N2E2_2886 0.82 +2.3
3,374,687 - Pf6N2E2_2886 0.82 +2.9
3,374,687 - Pf6N2E2_2886 0.82 +3.0
3,374,687 - Pf6N2E2_2886 0.82 +2.8
3,374,687 - Pf6N2E2_2886 0.82 +3.8
3,374,687 - Pf6N2E2_2886 0.82 +3.1
3,374,687 - Pf6N2E2_2886 0.82 +2.5
3,374,687 - Pf6N2E2_2886 0.82 +4.0
3,374,687 - Pf6N2E2_2886 0.82 +3.4
3,374,688 + Pf6N2E2_2886 0.82 +2.4
3,374,688 + Pf6N2E2_2886 0.82 +2.2
3,374,688 + Pf6N2E2_2886 0.82 +3.2
3,374,688 + Pf6N2E2_2886 0.82 +2.9
3,374,689 - Pf6N2E2_2886 0.82 +3.7
3,374,689 - Pf6N2E2_2886 0.82 +3.6
3,374,907 + +1.3
3,375,251 + Pf6N2E2_2887 0.40 +1.4
3,375,280 - Pf6N2E2_2887 0.44 +0.4
3,375,513 + Pf6N2E2_2887 0.71 -0.3
3,375,513 + Pf6N2E2_2887 0.71 +0.2
3,375,514 - Pf6N2E2_2887 0.71 +0.1
3,375,514 - Pf6N2E2_2887 0.71 -1.1
3,375,514 - Pf6N2E2_2887 0.71 +2.4
3,375,744 - +1.6
3,375,787 + -0.9
3,375,787 + -1.0
3,375,788 - +1.6
3,375,788 - +1.4
3,375,788 - +2.4
3,375,795 + -0.8
3,375,795 + +1.0
3,375,795 + +0.6
3,375,795 + +0.2
3,375,795 + +0.5
3,375,795 + -1.0
3,375,795 + -0.5
3,375,795 + -0.8
3,375,795 + +0.2
3,375,796 - +2.5
3,375,796 - +3.4
3,375,796 - +2.3
3,375,796 - +2.6
3,375,796 - +2.7
3,375,796 - +1.9
3,375,796 - +2.1
3,375,799 + +0.7
3,375,799 + -1.6
3,375,799 + -1.9
3,375,799 + +0.2
3,375,799 + -0.4
3,375,799 + +0.4
3,375,800 - +3.5
3,375,800 - +4.2
3,375,800 - +3.4
3,375,800 - +3.0
3,375,800 - +2.5
3,375,800 - +4.2
3,375,800 - +2.9
3,375,800 - +3.6
3,375,800 - +3.4
3,375,807 + -0.0
3,375,807 + -0.8
3,375,808 - +2.3
3,375,808 - +3.5
3,375,808 - +3.1

Or see this region's nucleotide sequence