Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2825 and Pf6N2E2_2826 are separated by 442 nucleotides Pf6N2E2_2826 and Pf6N2E2_2827 are separated by 252 nucleotides Pf6N2E2_2827 and Pf6N2E2_2828 are separated by 462 nucleotides
Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306
_2825
Pf6N2E2_2826 - hypothetical protein, at 3,315,749 to 3,316,039
_2826
Pf6N2E2_2827 - hypothetical protein, at 3,316,292 to 3,316,642
_2827
Pf6N2E2_2828 - PhaK-like protein, at 3,317,105 to 3,318,358
_2828
Position (kb)
3316
3317 Strain fitness (log2 ratio)
-2
-1
0
1 at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.360 kb on + strand at 3315.361 kb on - strand at 3315.452 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.545 kb on - strand at 3315.718 kb on + strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.723 kb on - strand at 3315.723 kb on - strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.208 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.279 kb on - strand at 3316.279 kb on - strand at 3316.279 kb on - strand at 3316.597 kb on - strand, within Pf6N2E2_2827 at 3316.597 kb on - strand, within Pf6N2E2_2827 at 3316.756 kb on - strand at 3317.015 kb on + strand at 3317.234 kb on + strand, within Pf6N2E2_2828 at 3317.234 kb on + strand, within Pf6N2E2_2828 at 3317.235 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.370 kb on - strand, within Pf6N2E2_2828 at 3317.408 kb on - strand, within Pf6N2E2_2828 at 3317.621 kb on + strand, within Pf6N2E2_2828 at 3317.621 kb on + strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,315,307 + -0.4 3,315,307 + +1.5 3,315,307 + -0.7 3,315,307 + -1.8 3,315,307 + +1.3 3,315,307 + +0.8 3,315,307 + +0.0 3,315,307 + -0.3 3,315,308 - +1.1 3,315,308 - -0.2 3,315,308 - -0.7 3,315,308 - -0.1 3,315,308 - -0.6 3,315,360 + +0.4 3,315,361 - -0.1 3,315,452 - +0.5 3,315,543 - -0.4 3,315,543 - +1.5 3,315,543 - +0.4 3,315,543 - -0.5 3,315,543 - +0.4 3,315,543 - +0.5 3,315,543 - +0.1 3,315,543 - +0.3 3,315,545 - +0.2 3,315,718 + -1.2 3,315,719 - +0.2 3,315,719 - +0.4 3,315,719 - +0.7 3,315,719 - -0.2 3,315,723 - +0.8 3,315,723 - -0.4 3,316,157 + +0.1 3,316,157 + -0.3 3,316,157 + +0.5 3,316,208 + +1.5 3,316,278 + +1.4 3,316,278 + -0.0 3,316,278 + +1.6 3,316,279 - +0.4 3,316,279 - +0.5 3,316,279 - +0.7 3,316,597 - Pf6N2E2_2827 0.87 -1.1 3,316,597 - Pf6N2E2_2827 0.87 -0.5 3,316,756 - +1.1 3,317,015 + -0.5 3,317,234 + Pf6N2E2_2828 0.10 +0.7 3,317,234 + Pf6N2E2_2828 0.10 -2.2 3,317,235 - Pf6N2E2_2828 0.10 +0.5 3,317,359 - Pf6N2E2_2828 0.20 +0.8 3,317,359 - Pf6N2E2_2828 0.20 +0.5 3,317,359 - Pf6N2E2_2828 0.20 +0.7 3,317,359 - Pf6N2E2_2828 0.20 +1.0 3,317,359 - Pf6N2E2_2828 0.20 -1.5 3,317,369 + Pf6N2E2_2828 0.21 +0.7 3,317,369 + Pf6N2E2_2828 0.21 -1.4 3,317,369 + Pf6N2E2_2828 0.21 +0.0 3,317,370 - Pf6N2E2_2828 0.21 -0.9 3,317,408 - Pf6N2E2_2828 0.24 -1.2 3,317,621 + Pf6N2E2_2828 0.41 -2.5 3,317,621 + Pf6N2E2_2828 0.41 +0.5 3,317,622 - Pf6N2E2_2828 0.41 -0.5 3,317,622 - Pf6N2E2_2828 0.41 -0.8 3,317,622 - Pf6N2E2_2828 0.41 +1.4
Or see this region's nucleotide sequence