Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotides Pf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotides Pf6N2E2_2693 and Pf6N2E2_2694 are separated by 248 nucleotides
Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355
_2691
Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960
_2692
Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274
_2693
Pf6N2E2_2694 - ATP-dependent RNA helicase HrpA (EC 3.6.4.13), at 3,183,523 to 3,187,434
_2694
Position (kb)
3182
3183
3184 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3181.315 kb on + strand, within Pf6N2E2_2691 at 3181.441 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.851 kb on + strand, within Pf6N2E2_2692 at 3181.852 kb on - strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.898 kb on - strand, within Pf6N2E2_2692 at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3182.112 kb on - strand at 3182.162 kb on - strand at 3182.244 kb on + strand at 3182.245 kb on - strand at 3182.245 kb on - strand at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.191 kb on - strand at 3183.191 kb on - strand at 3183.191 kb on - strand at 3183.240 kb on + strand at 3183.240 kb on + strand at 3183.240 kb on + strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.269 kb on - strand at 3183.320 kb on + strand at 3183.320 kb on + strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.326 kb on + strand at 3183.327 kb on - strand at 3183.424 kb on + strand at 3183.424 kb on + strand at 3183.424 kb on + strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.427 kb on - strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.480 kb on + strand at 3183.480 kb on + strand at 3183.480 kb on + strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.484 kb on + strand at 3183.845 kb on + strand at 3183.846 kb on - strand at 3183.874 kb on - strand at 3184.133 kb on + strand, within Pf6N2E2_2694
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,181,315 + Pf6N2E2_2691 0.83 +1.9 3,181,441 + Pf6N2E2_2692 0.15 -1.6 3,181,707 + Pf6N2E2_2692 0.58 -1.1 3,181,707 + Pf6N2E2_2692 0.58 +0.5 3,181,851 + Pf6N2E2_2692 0.82 -0.6 3,181,852 - Pf6N2E2_2692 0.82 -0.3 3,181,897 + Pf6N2E2_2692 0.90 -0.8 3,181,897 + Pf6N2E2_2692 0.90 +0.8 3,181,898 - Pf6N2E2_2692 0.90 +1.7 3,181,900 - -1.4 3,181,900 - +0.0 3,181,900 - -0.1 3,181,900 - -1.0 3,182,112 - -1.6 3,182,162 - +0.9 3,182,244 + -0.6 3,182,245 - -0.6 3,182,245 - -1.1 3,182,881 - Pf6N2E2_2693 0.65 -1.5 3,182,881 - Pf6N2E2_2693 0.65 +1.0 3,183,186 + -1.1 3,183,186 + -0.6 3,183,186 + +0.0 3,183,186 + -0.6 3,183,186 + +0.1 3,183,187 - -0.0 3,183,187 - -0.6 3,183,187 - +1.0 3,183,187 - -0.3 3,183,187 - -1.4 3,183,187 - -0.6 3,183,187 - -0.1 3,183,187 - -1.1 3,183,187 - +0.2 3,183,187 - +0.5 3,183,187 - -0.6 3,183,187 - +0.0 3,183,191 - -0.1 3,183,191 - -1.3 3,183,191 - -1.8 3,183,240 + -0.4 3,183,240 + -1.0 3,183,240 + -2.3 3,183,241 - +1.2 3,183,241 - +0.1 3,183,241 - -0.2 3,183,241 - -0.6 3,183,241 - +1.7 3,183,241 - +0.6 3,183,269 - -1.3 3,183,320 + -0.5 3,183,320 + -0.2 3,183,321 - -0.7 3,183,321 - +0.6 3,183,321 - -1.3 3,183,321 - +0.0 3,183,321 - +1.0 3,183,326 + +0.7 3,183,327 - +0.8 3,183,424 + +0.7 3,183,424 + +1.0 3,183,424 + -2.0 3,183,425 - -0.2 3,183,425 - -1.6 3,183,425 - +0.2 3,183,425 - +0.7 3,183,427 - -0.6 3,183,477 + -1.1 3,183,477 + -1.7 3,183,477 + -2.8 3,183,477 + +0.8 3,183,478 - -1.1 3,183,478 - -1.2 3,183,478 - +0.8 3,183,478 - +1.0 3,183,478 - +0.0 3,183,478 - +2.3 3,183,478 - +2.0 3,183,480 + +0.8 3,183,480 + -0.2 3,183,480 + +0.4 3,183,481 - -2.0 3,183,481 - -1.6 3,183,481 - +0.9 3,183,481 - +0.3 3,183,484 + -0.8 3,183,845 + +0.6 3,183,846 - -0.1 3,183,874 - -1.0 3,184,133 + Pf6N2E2_2694 0.16 -0.1
Or see this region's nucleotide sequence