Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2673 and Pf6N2E2_2674 are separated by 366 nucleotides Pf6N2E2_2674 and Pf6N2E2_2675 are separated by 245 nucleotides
Pf6N2E2_2673 - Cytochrome c family protein, at 3,160,050 to 3,162,554
_2673
Pf6N2E2_2674 - FIG00953856: hypothetical protein, at 3,162,921 to 3,163,196
_2674
Pf6N2E2_2675 - ATP-dependent RNA helicase SrmB, at 3,163,442 to 3,164,788
_2675
Position (kb)
3162
3163
3164 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3161.984 kb on - strand, within Pf6N2E2_2673 at 3162.043 kb on + strand, within Pf6N2E2_2673 at 3162.086 kb on + strand, within Pf6N2E2_2673 at 3162.119 kb on + strand, within Pf6N2E2_2673 at 3162.120 kb on - strand, within Pf6N2E2_2673 at 3162.183 kb on + strand, within Pf6N2E2_2673 at 3162.184 kb on - strand, within Pf6N2E2_2673 at 3162.184 kb on - strand, within Pf6N2E2_2673 at 3162.277 kb on + strand, within Pf6N2E2_2673 at 3162.278 kb on - strand, within Pf6N2E2_2673 at 3162.281 kb on + strand, within Pf6N2E2_2673 at 3162.296 kb on - strand, within Pf6N2E2_2673 at 3162.438 kb on + strand at 3162.439 kb on - strand at 3162.554 kb on + strand at 3162.598 kb on - strand at 3162.613 kb on + strand at 3162.614 kb on - strand at 3162.617 kb on + strand at 3162.683 kb on + strand at 3162.683 kb on + strand at 3162.684 kb on - strand at 3162.684 kb on - strand at 3162.684 kb on - strand at 3162.697 kb on + strand at 3162.698 kb on - strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.713 kb on + strand at 3162.714 kb on - strand at 3162.751 kb on + strand at 3162.752 kb on - strand at 3162.780 kb on - strand at 3162.780 kb on - strand at 3162.792 kb on - strand at 3162.907 kb on + strand at 3162.908 kb on - strand at 3163.151 kb on + strand, within Pf6N2E2_2674 at 3163.204 kb on - strand at 3163.292 kb on + strand at 3163.293 kb on - strand at 3163.293 kb on - strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.373 kb on + strand at 3163.374 kb on - strand at 3163.393 kb on - strand at 3163.657 kb on - strand, within Pf6N2E2_2675
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 3,161,984 - Pf6N2E2_2673 0.77 -0.3 3,162,043 + Pf6N2E2_2673 0.80 +1.3 3,162,086 + Pf6N2E2_2673 0.81 +1.6 3,162,119 + Pf6N2E2_2673 0.83 -1.9 3,162,120 - Pf6N2E2_2673 0.83 -0.6 3,162,183 + Pf6N2E2_2673 0.85 +0.3 3,162,184 - Pf6N2E2_2673 0.85 +0.4 3,162,184 - Pf6N2E2_2673 0.85 +0.3 3,162,277 + Pf6N2E2_2673 0.89 +0.7 3,162,278 - Pf6N2E2_2673 0.89 +0.8 3,162,281 + Pf6N2E2_2673 0.89 +1.4 3,162,296 - Pf6N2E2_2673 0.90 +0.6 3,162,438 + +0.9 3,162,439 - +2.1 3,162,554 + -0.2 3,162,598 - -0.3 3,162,613 + -1.3 3,162,614 - -1.1 3,162,617 + +0.1 3,162,683 + +0.4 3,162,683 + +0.9 3,162,684 - +0.6 3,162,684 - +0.3 3,162,684 - -0.4 3,162,697 + +0.1 3,162,698 - +0.2 3,162,713 + -1.2 3,162,713 + +0.2 3,162,713 + -0.2 3,162,713 + -0.3 3,162,713 + +0.7 3,162,713 + +2.0 3,162,714 - +0.5 3,162,751 + -0.3 3,162,752 - -1.4 3,162,780 - +1.2 3,162,780 - +0.6 3,162,792 - -0.2 3,162,907 + +0.2 3,162,908 - +1.9 3,163,151 + Pf6N2E2_2674 0.83 -0.9 3,163,204 - -0.6 3,163,292 + -0.3 3,163,293 - +0.2 3,163,293 - +1.8 3,163,373 + +0.2 3,163,373 + +0.6 3,163,373 + -3.3 3,163,373 + +0.6 3,163,373 + +0.6 3,163,374 - -1.0 3,163,393 - +0.3 3,163,657 - Pf6N2E2_2675 0.16 -0.4
Or see this region's nucleotide sequence