Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2584

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2583 and Pf6N2E2_2584 are separated by 9 nucleotidesPf6N2E2_2584 and Pf6N2E2_2585 are separated by 232 nucleotides Pf6N2E2_2583 - Flagellar motor switch protein FliM, at 3,040,659 to 3,041,627 _2583 Pf6N2E2_2584 - Flagellar biosynthesis protein FliL, at 3,041,637 to 3,042,140 _2584 Pf6N2E2_2585 - Flagellar hook-length control protein FliK, at 3,042,373 to 3,043,746 _2585 Position (kb) 3041 3042 3043Strain fitness (log2 ratio) -2 -1 0 1at 3040.641 kb on + strandat 3040.641 kb on + strandat 3040.641 kb on + strandat 3040.972 kb on + strand, within Pf6N2E2_2583at 3040.973 kb on - strand, within Pf6N2E2_2583at 3041.095 kb on + strand, within Pf6N2E2_2583at 3041.096 kb on - strand, within Pf6N2E2_2583at 3041.338 kb on + strand, within Pf6N2E2_2583at 3041.339 kb on - strand, within Pf6N2E2_2583at 3041.353 kb on + strand, within Pf6N2E2_2583at 3041.353 kb on + strand, within Pf6N2E2_2583at 3041.354 kb on - strand, within Pf6N2E2_2583at 3041.354 kb on - strand, within Pf6N2E2_2583at 3041.354 kb on - strand, within Pf6N2E2_2583at 3041.354 kb on - strand, within Pf6N2E2_2583at 3041.354 kb on - strand, within Pf6N2E2_2583at 3041.515 kb on + strand, within Pf6N2E2_2583at 3041.639 kb on - strandat 3041.639 kb on - strandat 3041.647 kb on - strandat 3041.870 kb on + strand, within Pf6N2E2_2584at 3041.887 kb on + strand, within Pf6N2E2_2584at 3041.887 kb on + strand, within Pf6N2E2_2584at 3041.887 kb on + strand, within Pf6N2E2_2584at 3041.887 kb on + strand, within Pf6N2E2_2584at 3041.888 kb on - strand, within Pf6N2E2_2584at 3041.888 kb on - strand, within Pf6N2E2_2584at 3041.888 kb on - strand, within Pf6N2E2_2584at 3041.888 kb on - strand, within Pf6N2E2_2584at 3041.911 kb on + strand, within Pf6N2E2_2584at 3041.911 kb on + strand, within Pf6N2E2_2584at 3041.911 kb on + strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3041.912 kb on - strand, within Pf6N2E2_2584at 3042.019 kb on + strand, within Pf6N2E2_2584at 3042.019 kb on + strand, within Pf6N2E2_2584at 3042.040 kb on - strand, within Pf6N2E2_2584at 3042.040 kb on - strand, within Pf6N2E2_2584at 3042.040 kb on - strand, within Pf6N2E2_2584at 3042.114 kb on + strandat 3042.114 kb on + strandat 3042.146 kb on + strandat 3042.147 kb on - strandat 3042.157 kb on + strandat 3042.201 kb on + strandat 3042.304 kb on + strandat 3042.305 kb on - strandat 3042.315 kb on + strandat 3042.315 kb on + strandat 3042.315 kb on + strandat 3042.315 kb on + strandat 3042.380 kb on + strandat 3042.380 kb on + strandat 3042.380 kb on + strandat 3042.381 kb on - strandat 3042.381 kb on - strandat 3042.383 kb on + strandat 3042.384 kb on - strandat 3042.417 kb on + strandat 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.773 kb on + strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.774 kb on - strand, within Pf6N2E2_2585at 3042.825 kb on + strand, within Pf6N2E2_2585at 3042.826 kb on - strand, within Pf6N2E2_2585at 3042.864 kb on + strand, within Pf6N2E2_2585at 3042.865 kb on - strand, within Pf6N2E2_2585at 3042.865 kb on - strand, within Pf6N2E2_2585

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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3,040,641 + -0.9
3,040,641 + +1.0
3,040,641 + +0.9
3,040,972 + Pf6N2E2_2583 0.32 -0.6
3,040,973 - Pf6N2E2_2583 0.32 +0.3
3,041,095 + Pf6N2E2_2583 0.45 +0.1
3,041,096 - Pf6N2E2_2583 0.45 -0.4
3,041,338 + Pf6N2E2_2583 0.70 +0.6
3,041,339 - Pf6N2E2_2583 0.70 +0.4
3,041,353 + Pf6N2E2_2583 0.72 -0.6
3,041,353 + Pf6N2E2_2583 0.72 -0.3
3,041,354 - Pf6N2E2_2583 0.72 +0.8
3,041,354 - Pf6N2E2_2583 0.72 +0.3
3,041,354 - Pf6N2E2_2583 0.72 +1.6
3,041,354 - Pf6N2E2_2583 0.72 +0.7
3,041,354 - Pf6N2E2_2583 0.72 +0.3
3,041,515 + Pf6N2E2_2583 0.88 +1.5
3,041,639 - -0.5
3,041,639 - +0.7
3,041,647 - -0.7
3,041,870 + Pf6N2E2_2584 0.46 -0.4
3,041,887 + Pf6N2E2_2584 0.50 -1.0
3,041,887 + Pf6N2E2_2584 0.50 +1.0
3,041,887 + Pf6N2E2_2584 0.50 +0.8
3,041,887 + Pf6N2E2_2584 0.50 +0.9
3,041,888 - Pf6N2E2_2584 0.50 -0.0
3,041,888 - Pf6N2E2_2584 0.50 +0.8
3,041,888 - Pf6N2E2_2584 0.50 -1.7
3,041,888 - Pf6N2E2_2584 0.50 +1.0
3,041,911 + Pf6N2E2_2584 0.54 -0.4
3,041,911 + Pf6N2E2_2584 0.54 -0.4
3,041,911 + Pf6N2E2_2584 0.54 -0.3
3,041,912 - Pf6N2E2_2584 0.55 +1.4
3,041,912 - Pf6N2E2_2584 0.55 +0.6
3,041,912 - Pf6N2E2_2584 0.55 -0.0
3,041,912 - Pf6N2E2_2584 0.55 -0.8
3,041,912 - Pf6N2E2_2584 0.55 -1.5
3,041,912 - Pf6N2E2_2584 0.55 -0.1
3,042,019 + Pf6N2E2_2584 0.76 -1.1
3,042,019 + Pf6N2E2_2584 0.76 -0.7
3,042,040 - Pf6N2E2_2584 0.80 -0.1
3,042,040 - Pf6N2E2_2584 0.80 -0.3
3,042,040 - Pf6N2E2_2584 0.80 +0.6
3,042,114 + +0.2
3,042,114 + +1.1
3,042,146 + -0.9
3,042,147 - -0.7
3,042,157 + +0.7
3,042,201 + +1.0
3,042,304 + +0.4
3,042,305 - -2.6
3,042,315 + -0.0
3,042,315 + -0.6
3,042,315 + -0.1
3,042,315 + +0.4
3,042,380 + -1.8
3,042,380 + -0.8
3,042,380 + -0.6
3,042,381 - -0.2
3,042,381 - -0.1
3,042,383 + +0.8
3,042,384 - -0.9
3,042,417 + -0.0
3,042,773 + Pf6N2E2_2585 0.29 +0.8
3,042,773 + Pf6N2E2_2585 0.29 +0.1
3,042,773 + Pf6N2E2_2585 0.29 +0.4
3,042,773 + Pf6N2E2_2585 0.29 +0.8
3,042,773 + Pf6N2E2_2585 0.29 +0.5
3,042,773 + Pf6N2E2_2585 0.29 -0.7
3,042,773 + Pf6N2E2_2585 0.29 -0.0
3,042,774 - Pf6N2E2_2585 0.29 +1.0
3,042,774 - Pf6N2E2_2585 0.29 -0.1
3,042,774 - Pf6N2E2_2585 0.29 +0.1
3,042,774 - Pf6N2E2_2585 0.29 -0.5
3,042,774 - Pf6N2E2_2585 0.29 +1.5
3,042,774 - Pf6N2E2_2585 0.29 +0.8
3,042,774 - Pf6N2E2_2585 0.29 +1.0
3,042,774 - Pf6N2E2_2585 0.29 -0.8
3,042,774 - Pf6N2E2_2585 0.29 +1.4
3,042,774 - Pf6N2E2_2585 0.29 +0.6
3,042,774 - Pf6N2E2_2585 0.29 +0.2
3,042,825 + Pf6N2E2_2585 0.33 -0.5
3,042,826 - Pf6N2E2_2585 0.33 +0.6
3,042,864 + Pf6N2E2_2585 0.36 +0.4
3,042,865 - Pf6N2E2_2585 0.36 +1.0
3,042,865 - Pf6N2E2_2585 0.36 -0.7

Or see this region's nucleotide sequence