Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2510

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2509 and Pf6N2E2_2510 are separated by 485 nucleotidesPf6N2E2_2510 and Pf6N2E2_2511 are separated by 57 nucleotidesPf6N2E2_2511 and Pf6N2E2_2512 are separated by 92 nucleotides Pf6N2E2_2509 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,961,069 to 2,961,572 _2509 Pf6N2E2_2510 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase, at 2,962,058 to 2,963,188 _2510 Pf6N2E2_2511 - hypothetical protein, at 2,963,246 to 2,963,362 _2511 Pf6N2E2_2512 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 2,963,455 to 2,964,477 _2512 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2961.113 kb on + strandat 2961.114 kb on - strandat 2961.217 kb on - strand, within Pf6N2E2_2509at 2961.342 kb on - strand, within Pf6N2E2_2509at 2961.632 kb on - strandat 2961.873 kb on - strandat 2961.972 kb on - strandat 2962.002 kb on + strandat 2962.042 kb on - strandat 2962.256 kb on + strand, within Pf6N2E2_2510at 2962.258 kb on + strand, within Pf6N2E2_2510at 2962.262 kb on - strand, within Pf6N2E2_2510at 2962.364 kb on + strand, within Pf6N2E2_2510at 2962.365 kb on - strand, within Pf6N2E2_2510at 2962.365 kb on - strand, within Pf6N2E2_2510at 2962.370 kb on - strand, within Pf6N2E2_2510at 2962.370 kb on - strand, within Pf6N2E2_2510at 2962.386 kb on - strand, within Pf6N2E2_2510at 2962.449 kb on - strand, within Pf6N2E2_2510at 2962.449 kb on - strand, within Pf6N2E2_2510at 2962.678 kb on + strand, within Pf6N2E2_2510at 2962.678 kb on + strand, within Pf6N2E2_2510at 2962.679 kb on - strand, within Pf6N2E2_2510at 2962.778 kb on - strand, within Pf6N2E2_2510at 2963.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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2,961,113 + -2.1
2,961,114 - +0.6
2,961,217 - Pf6N2E2_2509 0.29 -2.8
2,961,342 - Pf6N2E2_2509 0.54 -4.9
2,961,632 - -3.9
2,961,873 - -2.5
2,961,972 - -1.4
2,962,002 + -3.1
2,962,042 - +0.5
2,962,256 + Pf6N2E2_2510 0.18 -2.9
2,962,258 + Pf6N2E2_2510 0.18 -3.2
2,962,262 - Pf6N2E2_2510 0.18 +1.6
2,962,364 + Pf6N2E2_2510 0.27 -0.1
2,962,365 - Pf6N2E2_2510 0.27 -1.1
2,962,365 - Pf6N2E2_2510 0.27 -2.9
2,962,370 - Pf6N2E2_2510 0.28 -2.4
2,962,370 - Pf6N2E2_2510 0.28 -1.9
2,962,386 - Pf6N2E2_2510 0.29 -2.1
2,962,449 - Pf6N2E2_2510 0.35 -1.7
2,962,449 - Pf6N2E2_2510 0.35 -1.1
2,962,678 + Pf6N2E2_2510 0.55 -2.7
2,962,678 + Pf6N2E2_2510 0.55 +0.0
2,962,679 - Pf6N2E2_2510 0.55 -2.8
2,962,778 - Pf6N2E2_2510 0.64 -1.1
2,963,202 - -0.1

Or see this region's nucleotide sequence