Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2216 and Pf6N2E2_2217 are separated by 161 nucleotides Pf6N2E2_2217 and Pf6N2E2_2218 are separated by 107 nucleotides Pf6N2E2_2218 and Pf6N2E2_2219 are separated by 93 nucleotides
Pf6N2E2_2216 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,625,738 to 2,628,134
_2216
Pf6N2E2_2217 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,628,296 to 2,629,579
_2217
Pf6N2E2_2218 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 2,629,687 to 2,630,328
_2218
Pf6N2E2_2219 - Cell division trigger factor (EC 5.2.1.8), at 2,630,422 to 2,631,732
_2219
Position (kb)
2628
2629
2630 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.237 kb on - strand at 2628.298 kb on - strand at 2628.298 kb on - strand at 2628.298 kb on - strand at 2628.340 kb on - strand at 2628.340 kb on - strand at 2628.340 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.369 kb on - strand at 2628.369 kb on - strand at 2628.395 kb on - strand at 2628.424 kb on - strand at 2628.424 kb on - strand at 2628.441 kb on - strand, within Pf6N2E2_2217 at 2628.540 kb on - strand, within Pf6N2E2_2217 at 2628.558 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2629.030 kb on - strand, within Pf6N2E2_2217 at 2629.030 kb on - strand, within Pf6N2E2_2217 at 2629.063 kb on - strand, within Pf6N2E2_2217 at 2629.063 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.348 kb on - strand, within Pf6N2E2_2217 at 2629.390 kb on + strand, within Pf6N2E2_2217 at 2629.536 kb on + strand at 2629.537 kb on - strand at 2629.676 kb on + strand at 2630.048 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.165 kb on + strand, within Pf6N2E2_2218 at 2630.219 kb on + strand, within Pf6N2E2_2218 at 2630.219 kb on + strand, within Pf6N2E2_2218 at 2630.220 kb on - strand, within Pf6N2E2_2218 at 2630.220 kb on - strand, within Pf6N2E2_2218 at 2630.349 kb on + strand at 2630.349 kb on + strand at 2630.350 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.365 kb on - strand at 2630.371 kb on - strand at 2630.393 kb on - strand at 2630.403 kb on - strand at 2630.466 kb on - strand at 2630.466 kb on - strand at 2630.509 kb on - strand at 2630.571 kb on - strand, within Pf6N2E2_2219
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 2,628,180 - -0.3 2,628,180 - -2.7 2,628,180 - +0.7 2,628,180 - +1.0 2,628,180 - -0.2 2,628,237 - -0.7 2,628,298 - +0.4 2,628,298 - +0.1 2,628,298 - -0.9 2,628,340 - -0.9 2,628,340 - +0.2 2,628,340 - +0.4 2,628,344 - -0.9 2,628,344 - +0.9 2,628,344 - -0.2 2,628,344 - -1.9 2,628,344 - +0.3 2,628,344 - -0.8 2,628,344 - +0.7 2,628,346 - -0.7 2,628,346 - -1.1 2,628,346 - -0.9 2,628,346 - -1.0 2,628,346 - -0.1 2,628,346 - -0.5 2,628,346 - +0.4 2,628,346 - -0.0 2,628,346 - -1.3 2,628,346 - +0.2 2,628,346 - +0.1 2,628,346 - +0.3 2,628,346 - -0.6 2,628,346 - -0.2 2,628,346 - +1.7 2,628,346 - +0.3 2,628,346 - +0.7 2,628,346 - -0.5 2,628,346 - -0.8 2,628,346 - +0.3 2,628,346 - -1.0 2,628,346 - -1.2 2,628,346 - -0.4 2,628,346 - -0.3 2,628,369 - -1.1 2,628,369 - -0.9 2,628,395 - -2.3 2,628,424 - -0.7 2,628,424 - -2.8 2,628,441 - Pf6N2E2_2217 0.11 -1.3 2,628,540 - Pf6N2E2_2217 0.19 -0.5 2,628,558 - Pf6N2E2_2217 0.20 -1.1 2,628,568 - Pf6N2E2_2217 0.21 -1.1 2,628,568 - Pf6N2E2_2217 0.21 -2.8 2,628,568 - Pf6N2E2_2217 0.21 -2.3 2,628,568 - Pf6N2E2_2217 0.21 -1.9 2,629,030 - Pf6N2E2_2217 0.57 -2.7 2,629,030 - Pf6N2E2_2217 0.57 -2.1 2,629,063 - Pf6N2E2_2217 0.60 -2.8 2,629,063 - Pf6N2E2_2217 0.60 -2.8 2,629,300 - Pf6N2E2_2217 0.78 -1.0 2,629,300 - Pf6N2E2_2217 0.78 -1.4 2,629,300 - Pf6N2E2_2217 0.78 -3.1 2,629,348 - Pf6N2E2_2217 0.82 -1.9 2,629,390 + Pf6N2E2_2217 0.85 -2.9 2,629,536 + -2.1 2,629,537 - -3.1 2,629,676 + -0.5 2,630,048 + Pf6N2E2_2218 0.56 -1.7 2,630,093 + Pf6N2E2_2218 0.63 -0.1 2,630,093 + Pf6N2E2_2218 0.63 -0.9 2,630,093 + Pf6N2E2_2218 0.63 -1.9 2,630,093 + Pf6N2E2_2218 0.63 -0.5 2,630,093 + Pf6N2E2_2218 0.63 -1.2 2,630,094 - Pf6N2E2_2218 0.63 -1.9 2,630,094 - Pf6N2E2_2218 0.63 -0.1 2,630,094 - Pf6N2E2_2218 0.63 -1.9 2,630,094 - Pf6N2E2_2218 0.63 -2.1 2,630,094 - Pf6N2E2_2218 0.63 +0.9 2,630,094 - Pf6N2E2_2218 0.63 -2.7 2,630,165 + Pf6N2E2_2218 0.74 -2.6 2,630,219 + Pf6N2E2_2218 0.83 -1.1 2,630,219 + Pf6N2E2_2218 0.83 -1.1 2,630,220 - Pf6N2E2_2218 0.83 -1.1 2,630,220 - Pf6N2E2_2218 0.83 +0.9 2,630,349 + -1.9 2,630,349 + -0.9 2,630,350 - -0.9 2,630,354 - -0.6 2,630,354 - +0.7 2,630,354 - +0.6 2,630,354 - -0.2 2,630,354 - -0.5 2,630,365 - -1.5 2,630,371 - -0.7 2,630,393 - +0.6 2,630,403 - +0.4 2,630,466 - +0.9 2,630,466 - +1.0 2,630,509 - +1.3 2,630,571 - Pf6N2E2_2219 0.11 +0.9
Or see this region's nucleotide sequence