Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1798

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1797 and Pf6N2E2_1798 are separated by 295 nucleotidesPf6N2E2_1798 and Pf6N2E2_1799 are separated by 140 nucleotides Pf6N2E2_1797 - Transcriptional regulator, at 2,126,218 to 2,127,183 _1797 Pf6N2E2_1798 - Argininosuccinate lyase (EC 4.3.2.1), at 2,127,479 to 2,128,906 _1798 Pf6N2E2_1799 - ABC transporter permease protein, at 2,129,047 to 2,129,925 _1799 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -3 -2 -1 0 1at 2126.619 kb on - strand, within Pf6N2E2_1797at 2126.627 kb on + strand, within Pf6N2E2_1797at 2126.902 kb on + strand, within Pf6N2E2_1797at 2127.191 kb on - strandat 2127.639 kb on + strand, within Pf6N2E2_1798at 2127.752 kb on - strand, within Pf6N2E2_1798at 2128.030 kb on - strand, within Pf6N2E2_1798at 2128.030 kb on - strand, within Pf6N2E2_1798at 2128.054 kb on - strand, within Pf6N2E2_1798at 2128.054 kb on - strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.057 kb on + strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.058 kb on - strand, within Pf6N2E2_1798at 2128.235 kb on - strand, within Pf6N2E2_1798at 2128.439 kb on + strand, within Pf6N2E2_1798at 2128.886 kb on + strandat 2128.887 kb on - strandat 2129.144 kb on - strand, within Pf6N2E2_1799at 2129.230 kb on + strand, within Pf6N2E2_1799at 2129.390 kb on - strand, within Pf6N2E2_1799at 2129.390 kb on - strand, within Pf6N2E2_1799at 2129.390 kb on - strand, within Pf6N2E2_1799at 2129.560 kb on + strand, within Pf6N2E2_1799at 2129.561 kb on - strand, within Pf6N2E2_1799at 2129.589 kb on - strand, within Pf6N2E2_1799at 2129.774 kb on - strand, within Pf6N2E2_1799at 2129.774 kb on - strand, within Pf6N2E2_1799at 2129.791 kb on + strand, within Pf6N2E2_1799at 2129.792 kb on - strand, within Pf6N2E2_1799

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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2,126,619 - Pf6N2E2_1797 0.42 +0.5
2,126,627 + Pf6N2E2_1797 0.42 -1.5
2,126,902 + Pf6N2E2_1797 0.71 +1.2
2,127,191 - +0.7
2,127,639 + Pf6N2E2_1798 0.11 -1.0
2,127,752 - Pf6N2E2_1798 0.19 -1.0
2,128,030 - Pf6N2E2_1798 0.39 -1.0
2,128,030 - Pf6N2E2_1798 0.39 +0.1
2,128,054 - Pf6N2E2_1798 0.40 +0.7
2,128,054 - Pf6N2E2_1798 0.40 +0.2
2,128,057 + Pf6N2E2_1798 0.40 -0.3
2,128,057 + Pf6N2E2_1798 0.40 +0.2
2,128,057 + Pf6N2E2_1798 0.40 +0.4
2,128,057 + Pf6N2E2_1798 0.40 +1.0
2,128,057 + Pf6N2E2_1798 0.40 +1.5
2,128,058 - Pf6N2E2_1798 0.41 +1.5
2,128,058 - Pf6N2E2_1798 0.41 +0.2
2,128,058 - Pf6N2E2_1798 0.41 +0.8
2,128,058 - Pf6N2E2_1798 0.41 -0.5
2,128,235 - Pf6N2E2_1798 0.53 +0.7
2,128,439 + Pf6N2E2_1798 0.67 +0.7
2,128,886 + +0.5
2,128,887 - -0.7
2,129,144 - Pf6N2E2_1799 0.11 -1.1
2,129,230 + Pf6N2E2_1799 0.21 -3.3
2,129,390 - Pf6N2E2_1799 0.39 +0.1
2,129,390 - Pf6N2E2_1799 0.39 -0.5
2,129,390 - Pf6N2E2_1799 0.39 -0.8
2,129,560 + Pf6N2E2_1799 0.58 +0.3
2,129,561 - Pf6N2E2_1799 0.58 +1.0
2,129,589 - Pf6N2E2_1799 0.62 -0.5
2,129,774 - Pf6N2E2_1799 0.83 +0.5
2,129,774 - Pf6N2E2_1799 0.83 -0.4
2,129,791 + Pf6N2E2_1799 0.85 -2.1
2,129,792 - Pf6N2E2_1799 0.85 -1.9

Or see this region's nucleotide sequence