Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1797 and Pf6N2E2_1798 are separated by 295 nucleotides Pf6N2E2_1798 and Pf6N2E2_1799 are separated by 140 nucleotides
Pf6N2E2_1797 - Transcriptional regulator, at 2,126,218 to 2,127,183
_1797
Pf6N2E2_1798 - Argininosuccinate lyase (EC 4.3.2.1), at 2,127,479 to 2,128,906
_1798
Pf6N2E2_1799 - ABC transporter permease protein, at 2,129,047 to 2,129,925
_1799
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2126.619 kb on - strand, within Pf6N2E2_1797 at 2126.627 kb on + strand, within Pf6N2E2_1797 at 2126.902 kb on + strand, within Pf6N2E2_1797 at 2127.191 kb on - strand at 2127.639 kb on + strand, within Pf6N2E2_1798 at 2127.752 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.030 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.054 kb on - strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.057 kb on + strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.058 kb on - strand, within Pf6N2E2_1798 at 2128.235 kb on - strand, within Pf6N2E2_1798 at 2128.439 kb on + strand, within Pf6N2E2_1798 at 2128.886 kb on + strand at 2128.887 kb on - strand at 2129.144 kb on - strand, within Pf6N2E2_1799 at 2129.230 kb on + strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.390 kb on - strand, within Pf6N2E2_1799 at 2129.560 kb on + strand, within Pf6N2E2_1799 at 2129.561 kb on - strand, within Pf6N2E2_1799 at 2129.589 kb on - strand, within Pf6N2E2_1799 at 2129.774 kb on - strand, within Pf6N2E2_1799 at 2129.774 kb on - strand, within Pf6N2E2_1799 at 2129.791 kb on + strand, within Pf6N2E2_1799 at 2129.792 kb on - strand, within Pf6N2E2_1799
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 2,126,619 - Pf6N2E2_1797 0.42 +0.5 2,126,627 + Pf6N2E2_1797 0.42 -1.5 2,126,902 + Pf6N2E2_1797 0.71 +1.2 2,127,191 - +0.7 2,127,639 + Pf6N2E2_1798 0.11 -1.0 2,127,752 - Pf6N2E2_1798 0.19 -1.0 2,128,030 - Pf6N2E2_1798 0.39 -1.0 2,128,030 - Pf6N2E2_1798 0.39 +0.1 2,128,054 - Pf6N2E2_1798 0.40 +0.7 2,128,054 - Pf6N2E2_1798 0.40 +0.2 2,128,057 + Pf6N2E2_1798 0.40 -0.3 2,128,057 + Pf6N2E2_1798 0.40 +0.2 2,128,057 + Pf6N2E2_1798 0.40 +0.4 2,128,057 + Pf6N2E2_1798 0.40 +1.0 2,128,057 + Pf6N2E2_1798 0.40 +1.5 2,128,058 - Pf6N2E2_1798 0.41 +1.5 2,128,058 - Pf6N2E2_1798 0.41 +0.2 2,128,058 - Pf6N2E2_1798 0.41 +0.8 2,128,058 - Pf6N2E2_1798 0.41 -0.5 2,128,235 - Pf6N2E2_1798 0.53 +0.7 2,128,439 + Pf6N2E2_1798 0.67 +0.7 2,128,886 + +0.5 2,128,887 - -0.7 2,129,144 - Pf6N2E2_1799 0.11 -1.1 2,129,230 + Pf6N2E2_1799 0.21 -3.3 2,129,390 - Pf6N2E2_1799 0.39 +0.1 2,129,390 - Pf6N2E2_1799 0.39 -0.5 2,129,390 - Pf6N2E2_1799 0.39 -0.8 2,129,560 + Pf6N2E2_1799 0.58 +0.3 2,129,561 - Pf6N2E2_1799 0.58 +1.0 2,129,589 - Pf6N2E2_1799 0.62 -0.5 2,129,774 - Pf6N2E2_1799 0.83 +0.5 2,129,774 - Pf6N2E2_1799 0.83 -0.4 2,129,791 + Pf6N2E2_1799 0.85 -2.1 2,129,792 - Pf6N2E2_1799 0.85 -1.9
Or see this region's nucleotide sequence