Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1370 and Pf6N2E2_1371 overlap by 21 nucleotides Pf6N2E2_1371 and Pf6N2E2_1372 are separated by 2 nucleotides
Pf6N2E2_1370 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 1,607,107 to 1,608,579
_1370
Pf6N2E2_1371 - hypothetical protein, at 1,608,559 to 1,608,861
_1371
Pf6N2E2_1372 - sigma-54 dependent transcriptional regulator, at 1,608,864 to 1,610,639
_1372
Position (kb)
1608
1609 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1607.880 kb on + strand, within Pf6N2E2_1370 at 1607.901 kb on + strand, within Pf6N2E2_1370 at 1608.152 kb on + strand, within Pf6N2E2_1370 at 1608.152 kb on + strand, within Pf6N2E2_1370 at 1608.152 kb on + strand, within Pf6N2E2_1370 at 1608.293 kb on + strand, within Pf6N2E2_1370 at 1608.294 kb on - strand, within Pf6N2E2_1370 at 1608.294 kb on - strand, within Pf6N2E2_1370 at 1608.294 kb on - strand, within Pf6N2E2_1370 at 1608.582 kb on - strand at 1608.631 kb on - strand, within Pf6N2E2_1371 at 1608.696 kb on - strand, within Pf6N2E2_1371 at 1608.810 kb on - strand, within Pf6N2E2_1371 at 1608.816 kb on + strand, within Pf6N2E2_1371 at 1608.817 kb on - strand, within Pf6N2E2_1371 at 1608.859 kb on + strand at 1608.860 kb on - strand at 1608.860 kb on - strand at 1609.013 kb on + strand at 1609.014 kb on - strand at 1609.201 kb on + strand, within Pf6N2E2_1372 at 1609.290 kb on + strand, within Pf6N2E2_1372 at 1609.290 kb on + strand, within Pf6N2E2_1372 at 1609.290 kb on + strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.291 kb on - strand, within Pf6N2E2_1372 at 1609.347 kb on + strand, within Pf6N2E2_1372 at 1609.348 kb on - strand, within Pf6N2E2_1372 at 1609.389 kb on + strand, within Pf6N2E2_1372 at 1609.531 kb on - strand, within Pf6N2E2_1372 at 1609.857 kb on + strand, within Pf6N2E2_1372 at 1609.857 kb on + strand, within Pf6N2E2_1372 at 1609.857 kb on + strand, within Pf6N2E2_1372
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 1,607,880 + Pf6N2E2_1370 0.52 +0.3 1,607,901 + Pf6N2E2_1370 0.54 +0.2 1,608,152 + Pf6N2E2_1370 0.71 +1.1 1,608,152 + Pf6N2E2_1370 0.71 +0.2 1,608,152 + Pf6N2E2_1370 0.71 -0.5 1,608,293 + Pf6N2E2_1370 0.81 +0.7 1,608,294 - Pf6N2E2_1370 0.81 +0.7 1,608,294 - Pf6N2E2_1370 0.81 +0.2 1,608,294 - Pf6N2E2_1370 0.81 +0.9 1,608,582 - +2.7 1,608,631 - Pf6N2E2_1371 0.24 +0.9 1,608,696 - Pf6N2E2_1371 0.45 -0.3 1,608,810 - Pf6N2E2_1371 0.83 +1.2 1,608,816 + Pf6N2E2_1371 0.85 +0.5 1,608,817 - Pf6N2E2_1371 0.85 +0.2 1,608,859 + +2.4 1,608,860 - -2.2 1,608,860 - +0.2 1,609,013 + +0.8 1,609,014 - -0.8 1,609,201 + Pf6N2E2_1372 0.19 +2.0 1,609,290 + Pf6N2E2_1372 0.24 +0.5 1,609,290 + Pf6N2E2_1372 0.24 -0.4 1,609,290 + Pf6N2E2_1372 0.24 +2.0 1,609,291 - Pf6N2E2_1372 0.24 +0.4 1,609,291 - Pf6N2E2_1372 0.24 -0.6 1,609,291 - Pf6N2E2_1372 0.24 -0.5 1,609,291 - Pf6N2E2_1372 0.24 -0.5 1,609,291 - Pf6N2E2_1372 0.24 -0.5 1,609,291 - Pf6N2E2_1372 0.24 +0.9 1,609,347 + Pf6N2E2_1372 0.27 -0.4 1,609,348 - Pf6N2E2_1372 0.27 -1.7 1,609,389 + Pf6N2E2_1372 0.30 -0.1 1,609,531 - Pf6N2E2_1372 0.38 -0.2 1,609,857 + Pf6N2E2_1372 0.56 +0.5 1,609,857 + Pf6N2E2_1372 0.56 -0.3 1,609,857 + Pf6N2E2_1372 0.56 +0.3
Or see this region's nucleotide sequence