Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1184

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1183 and Pf6N2E2_1184 are separated by 20 nucleotidesPf6N2E2_1184 and Pf6N2E2_1185 are separated by 11 nucleotides Pf6N2E2_1183 - Major facilitator family transporter, at 1,385,186 to 1,386,394 _1183 Pf6N2E2_1184 - L-Proline/Glycine betaine transporter ProP, at 1,386,415 to 1,387,719 _1184 Pf6N2E2_1185 - Acetylornithine deacetylase (EC 3.5.1.16), at 1,387,731 to 1,388,972 _1185 Position (kb) 1386 1387 1388Strain fitness (log2 ratio) -1 0 1 2at 1385.519 kb on + strand, within Pf6N2E2_1183at 1385.519 kb on + strand, within Pf6N2E2_1183at 1385.519 kb on + strand, within Pf6N2E2_1183at 1385.520 kb on - strandat 1385.556 kb on + strand, within Pf6N2E2_1183at 1385.769 kb on + strand, within Pf6N2E2_1183at 1385.905 kb on + strand, within Pf6N2E2_1183at 1385.909 kb on + strand, within Pf6N2E2_1183at 1385.909 kb on + strand, within Pf6N2E2_1183at 1385.909 kb on + strand, within Pf6N2E2_1183at 1385.910 kb on - strand, within Pf6N2E2_1183at 1385.910 kb on - strand, within Pf6N2E2_1183at 1385.910 kb on - strand, within Pf6N2E2_1183at 1385.910 kb on - strand, within Pf6N2E2_1183at 1385.910 kb on - strand, within Pf6N2E2_1183at 1385.912 kb on - strand, within Pf6N2E2_1183at 1386.052 kb on + strand, within Pf6N2E2_1183at 1386.052 kb on + strand, within Pf6N2E2_1183at 1386.053 kb on - strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.116 kb on + strand, within Pf6N2E2_1183at 1386.117 kb on - strand, within Pf6N2E2_1183at 1386.117 kb on - strand, within Pf6N2E2_1183at 1386.461 kb on + strandat 1386.615 kb on - strand, within Pf6N2E2_1184at 1386.689 kb on + strand, within Pf6N2E2_1184at 1386.764 kb on - strand, within Pf6N2E2_1184at 1386.832 kb on - strand, within Pf6N2E2_1184at 1386.938 kb on + strand, within Pf6N2E2_1184at 1386.938 kb on + strand, within Pf6N2E2_1184at 1386.939 kb on - strand, within Pf6N2E2_1184at 1386.939 kb on - strand, within Pf6N2E2_1184at 1387.033 kb on - strand, within Pf6N2E2_1184at 1387.059 kb on + strand, within Pf6N2E2_1184at 1387.154 kb on + strand, within Pf6N2E2_1184at 1387.155 kb on - strand, within Pf6N2E2_1184at 1387.232 kb on - strand, within Pf6N2E2_1184at 1387.313 kb on + strand, within Pf6N2E2_1184at 1387.313 kb on + strand, within Pf6N2E2_1184at 1387.360 kb on + strand, within Pf6N2E2_1184at 1387.361 kb on - strand, within Pf6N2E2_1184at 1387.410 kb on - strand, within Pf6N2E2_1184at 1387.410 kb on - strandat 1387.828 kb on + strandat 1387.829 kb on - strandat 1387.829 kb on - strandat 1387.829 kb on - strandat 1387.829 kb on - strandat 1387.829 kb on - strandat 1387.829 kb on - strandat 1388.085 kb on - strand, within Pf6N2E2_1185at 1388.103 kb on + strand, within Pf6N2E2_1185at 1388.104 kb on - strand, within Pf6N2E2_1185at 1388.515 kb on + strand, within Pf6N2E2_1185at 1388.515 kb on + strand, within Pf6N2E2_1185at 1388.516 kb on - strand, within Pf6N2E2_1185at 1388.516 kb on - strand, within Pf6N2E2_1185at 1388.620 kb on + strand, within Pf6N2E2_1185at 1388.621 kb on - strand, within Pf6N2E2_1185at 1388.621 kb on - strand, within Pf6N2E2_1185at 1388.641 kb on + strand, within Pf6N2E2_1185at 1388.642 kb on - strand, within Pf6N2E2_1185at 1388.697 kb on - strand, within Pf6N2E2_1185

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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1,385,519 + Pf6N2E2_1183 0.28 +0.3
1,385,519 + Pf6N2E2_1183 0.28 +0.1
1,385,519 + Pf6N2E2_1183 0.28 +0.1
1,385,520 - +1.1
1,385,556 + Pf6N2E2_1183 0.31 +0.1
1,385,769 + Pf6N2E2_1183 0.48 +0.3
1,385,905 + Pf6N2E2_1183 0.59 +0.6
1,385,909 + Pf6N2E2_1183 0.60 -0.3
1,385,909 + Pf6N2E2_1183 0.60 +0.0
1,385,909 + Pf6N2E2_1183 0.60 +0.6
1,385,910 - Pf6N2E2_1183 0.60 +0.7
1,385,910 - Pf6N2E2_1183 0.60 +0.6
1,385,910 - Pf6N2E2_1183 0.60 -0.7
1,385,910 - Pf6N2E2_1183 0.60 +0.4
1,385,910 - Pf6N2E2_1183 0.60 +0.1
1,385,912 - Pf6N2E2_1183 0.60 -0.2
1,386,052 + Pf6N2E2_1183 0.72 +0.7
1,386,052 + Pf6N2E2_1183 0.72 +0.2
1,386,053 - Pf6N2E2_1183 0.72 -0.6
1,386,116 + Pf6N2E2_1183 0.77 +0.4
1,386,116 + Pf6N2E2_1183 0.77 -0.3
1,386,116 + Pf6N2E2_1183 0.77 -0.1
1,386,116 + Pf6N2E2_1183 0.77 +0.2
1,386,116 + Pf6N2E2_1183 0.77 -0.4
1,386,116 + Pf6N2E2_1183 0.77 -1.5
1,386,116 + Pf6N2E2_1183 0.77 +0.9
1,386,117 - Pf6N2E2_1183 0.77 -0.9
1,386,117 - Pf6N2E2_1183 0.77 +1.7
1,386,461 + -0.7
1,386,615 - Pf6N2E2_1184 0.15 +0.9
1,386,689 + Pf6N2E2_1184 0.21 -0.6
1,386,764 - Pf6N2E2_1184 0.27 -0.0
1,386,832 - Pf6N2E2_1184 0.32 +1.1
1,386,938 + Pf6N2E2_1184 0.40 +0.4
1,386,938 + Pf6N2E2_1184 0.40 +0.7
1,386,939 - Pf6N2E2_1184 0.40 +0.3
1,386,939 - Pf6N2E2_1184 0.40 -0.2
1,387,033 - Pf6N2E2_1184 0.47 +1.2
1,387,059 + Pf6N2E2_1184 0.49 +1.3
1,387,154 + Pf6N2E2_1184 0.57 +1.0
1,387,155 - Pf6N2E2_1184 0.57 +0.8
1,387,232 - Pf6N2E2_1184 0.63 -0.0
1,387,313 + Pf6N2E2_1184 0.69 +1.2
1,387,313 + Pf6N2E2_1184 0.69 +0.5
1,387,360 + Pf6N2E2_1184 0.72 -0.5
1,387,361 - Pf6N2E2_1184 0.72 +0.9
1,387,410 - Pf6N2E2_1184 0.76 -0.5
1,387,410 - -0.9
1,387,828 + -0.1
1,387,829 - +0.3
1,387,829 - +1.0
1,387,829 - +0.1
1,387,829 - +0.3
1,387,829 - -1.2
1,387,829 - -0.6
1,388,085 - Pf6N2E2_1185 0.29 +0.2
1,388,103 + Pf6N2E2_1185 0.30 +0.6
1,388,104 - Pf6N2E2_1185 0.30 +1.0
1,388,515 + Pf6N2E2_1185 0.63 -0.5
1,388,515 + Pf6N2E2_1185 0.63 -1.5
1,388,516 - Pf6N2E2_1185 0.63 +1.8
1,388,516 - Pf6N2E2_1185 0.63 -0.3
1,388,620 + Pf6N2E2_1185 0.72 -0.2
1,388,621 - Pf6N2E2_1185 0.72 -0.6
1,388,621 - Pf6N2E2_1185 0.72 -1.2
1,388,641 + Pf6N2E2_1185 0.73 -0.4
1,388,642 - Pf6N2E2_1185 0.73 +0.4
1,388,697 - Pf6N2E2_1185 0.78 +0.9

Or see this region's nucleotide sequence