Experiment: Phosphomycin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1183 and Pf6N2E2_1184 are separated by 20 nucleotides Pf6N2E2_1184 and Pf6N2E2_1185 are separated by 11 nucleotides
Pf6N2E2_1183 - Major facilitator family transporter, at 1,385,186 to 1,386,394
_1183
Pf6N2E2_1184 - L-Proline/Glycine betaine transporter ProP, at 1,386,415 to 1,387,719
_1184
Pf6N2E2_1185 - Acetylornithine deacetylase (EC 3.5.1.16), at 1,387,731 to 1,388,972
_1185
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-1
0
1
2 at 1385.519 kb on + strand, within Pf6N2E2_1183 at 1385.519 kb on + strand, within Pf6N2E2_1183 at 1385.519 kb on + strand, within Pf6N2E2_1183 at 1385.520 kb on - strand at 1385.556 kb on + strand, within Pf6N2E2_1183 at 1385.769 kb on + strand, within Pf6N2E2_1183 at 1385.905 kb on + strand, within Pf6N2E2_1183 at 1385.909 kb on + strand, within Pf6N2E2_1183 at 1385.909 kb on + strand, within Pf6N2E2_1183 at 1385.909 kb on + strand, within Pf6N2E2_1183 at 1385.910 kb on - strand, within Pf6N2E2_1183 at 1385.910 kb on - strand, within Pf6N2E2_1183 at 1385.910 kb on - strand, within Pf6N2E2_1183 at 1385.910 kb on - strand, within Pf6N2E2_1183 at 1385.910 kb on - strand, within Pf6N2E2_1183 at 1385.912 kb on - strand, within Pf6N2E2_1183 at 1386.052 kb on + strand, within Pf6N2E2_1183 at 1386.052 kb on + strand, within Pf6N2E2_1183 at 1386.053 kb on - strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.116 kb on + strand, within Pf6N2E2_1183 at 1386.117 kb on - strand, within Pf6N2E2_1183 at 1386.117 kb on - strand, within Pf6N2E2_1183 at 1386.461 kb on + strand at 1386.615 kb on - strand, within Pf6N2E2_1184 at 1386.689 kb on + strand, within Pf6N2E2_1184 at 1386.764 kb on - strand, within Pf6N2E2_1184 at 1386.832 kb on - strand, within Pf6N2E2_1184 at 1386.938 kb on + strand, within Pf6N2E2_1184 at 1386.938 kb on + strand, within Pf6N2E2_1184 at 1386.939 kb on - strand, within Pf6N2E2_1184 at 1386.939 kb on - strand, within Pf6N2E2_1184 at 1387.033 kb on - strand, within Pf6N2E2_1184 at 1387.059 kb on + strand, within Pf6N2E2_1184 at 1387.154 kb on + strand, within Pf6N2E2_1184 at 1387.155 kb on - strand, within Pf6N2E2_1184 at 1387.232 kb on - strand, within Pf6N2E2_1184 at 1387.313 kb on + strand, within Pf6N2E2_1184 at 1387.313 kb on + strand, within Pf6N2E2_1184 at 1387.360 kb on + strand, within Pf6N2E2_1184 at 1387.361 kb on - strand, within Pf6N2E2_1184 at 1387.410 kb on - strand, within Pf6N2E2_1184 at 1387.410 kb on - strand at 1387.828 kb on + strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1387.829 kb on - strand at 1388.085 kb on - strand, within Pf6N2E2_1185 at 1388.103 kb on + strand, within Pf6N2E2_1185 at 1388.104 kb on - strand, within Pf6N2E2_1185 at 1388.515 kb on + strand, within Pf6N2E2_1185 at 1388.515 kb on + strand, within Pf6N2E2_1185 at 1388.516 kb on - strand, within Pf6N2E2_1185 at 1388.516 kb on - strand, within Pf6N2E2_1185 at 1388.620 kb on + strand, within Pf6N2E2_1185 at 1388.621 kb on - strand, within Pf6N2E2_1185 at 1388.621 kb on - strand, within Pf6N2E2_1185 at 1388.641 kb on + strand, within Pf6N2E2_1185 at 1388.642 kb on - strand, within Pf6N2E2_1185 at 1388.697 kb on - strand, within Pf6N2E2_1185
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml remove 1,385,519 + Pf6N2E2_1183 0.28 +0.3 1,385,519 + Pf6N2E2_1183 0.28 +0.1 1,385,519 + Pf6N2E2_1183 0.28 +0.1 1,385,520 - +1.1 1,385,556 + Pf6N2E2_1183 0.31 +0.1 1,385,769 + Pf6N2E2_1183 0.48 +0.3 1,385,905 + Pf6N2E2_1183 0.59 +0.6 1,385,909 + Pf6N2E2_1183 0.60 -0.3 1,385,909 + Pf6N2E2_1183 0.60 +0.0 1,385,909 + Pf6N2E2_1183 0.60 +0.6 1,385,910 - Pf6N2E2_1183 0.60 +0.7 1,385,910 - Pf6N2E2_1183 0.60 +0.6 1,385,910 - Pf6N2E2_1183 0.60 -0.7 1,385,910 - Pf6N2E2_1183 0.60 +0.4 1,385,910 - Pf6N2E2_1183 0.60 +0.1 1,385,912 - Pf6N2E2_1183 0.60 -0.2 1,386,052 + Pf6N2E2_1183 0.72 +0.7 1,386,052 + Pf6N2E2_1183 0.72 +0.2 1,386,053 - Pf6N2E2_1183 0.72 -0.6 1,386,116 + Pf6N2E2_1183 0.77 +0.4 1,386,116 + Pf6N2E2_1183 0.77 -0.3 1,386,116 + Pf6N2E2_1183 0.77 -0.1 1,386,116 + Pf6N2E2_1183 0.77 +0.2 1,386,116 + Pf6N2E2_1183 0.77 -0.4 1,386,116 + Pf6N2E2_1183 0.77 -1.5 1,386,116 + Pf6N2E2_1183 0.77 +0.9 1,386,117 - Pf6N2E2_1183 0.77 -0.9 1,386,117 - Pf6N2E2_1183 0.77 +1.7 1,386,461 + -0.7 1,386,615 - Pf6N2E2_1184 0.15 +0.9 1,386,689 + Pf6N2E2_1184 0.21 -0.6 1,386,764 - Pf6N2E2_1184 0.27 -0.0 1,386,832 - Pf6N2E2_1184 0.32 +1.1 1,386,938 + Pf6N2E2_1184 0.40 +0.4 1,386,938 + Pf6N2E2_1184 0.40 +0.7 1,386,939 - Pf6N2E2_1184 0.40 +0.3 1,386,939 - Pf6N2E2_1184 0.40 -0.2 1,387,033 - Pf6N2E2_1184 0.47 +1.2 1,387,059 + Pf6N2E2_1184 0.49 +1.3 1,387,154 + Pf6N2E2_1184 0.57 +1.0 1,387,155 - Pf6N2E2_1184 0.57 +0.8 1,387,232 - Pf6N2E2_1184 0.63 -0.0 1,387,313 + Pf6N2E2_1184 0.69 +1.2 1,387,313 + Pf6N2E2_1184 0.69 +0.5 1,387,360 + Pf6N2E2_1184 0.72 -0.5 1,387,361 - Pf6N2E2_1184 0.72 +0.9 1,387,410 - Pf6N2E2_1184 0.76 -0.5 1,387,410 - -0.9 1,387,828 + -0.1 1,387,829 - +0.3 1,387,829 - +1.0 1,387,829 - +0.1 1,387,829 - +0.3 1,387,829 - -1.2 1,387,829 - -0.6 1,388,085 - Pf6N2E2_1185 0.29 +0.2 1,388,103 + Pf6N2E2_1185 0.30 +0.6 1,388,104 - Pf6N2E2_1185 0.30 +1.0 1,388,515 + Pf6N2E2_1185 0.63 -0.5 1,388,515 + Pf6N2E2_1185 0.63 -1.5 1,388,516 - Pf6N2E2_1185 0.63 +1.8 1,388,516 - Pf6N2E2_1185 0.63 -0.3 1,388,620 + Pf6N2E2_1185 0.72 -0.2 1,388,621 - Pf6N2E2_1185 0.72 -0.6 1,388,621 - Pf6N2E2_1185 0.72 -1.2 1,388,641 + Pf6N2E2_1185 0.73 -0.4 1,388,642 - Pf6N2E2_1185 0.73 +0.4 1,388,697 - Pf6N2E2_1185 0.78 +0.9
Or see this region's nucleotide sequence