Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_906

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_905 and Ac3H11_906 overlap by 4 nucleotidesAc3H11_906 and Ac3H11_907 are separated by 154 nucleotidesAc3H11_907 and Ac3H11_908 are separated by 136 nucleotides Ac3H11_905 - Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup, at 19,736 to 20,737 _905 Ac3H11_906 - Glutathione S-transferase domain protein, at 20,734 to 21,429 _906 Ac3H11_907 - hypothetical protein, at 21,584 to 21,802 _907 Ac3H11_908 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 21,939 to 22,475 _908 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 20.001 kb on - strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.081 kb on + strand, within Ac3H11_905at 20.082 kb on - strand, within Ac3H11_905at 20.082 kb on - strand, within Ac3H11_905at 20.082 kb on - strand, within Ac3H11_905at 20.082 kb on - strand, within Ac3H11_905at 20.082 kb on - strand, within Ac3H11_905at 20.153 kb on + strand, within Ac3H11_905at 20.154 kb on - strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.354 kb on + strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.355 kb on - strand, within Ac3H11_905at 20.381 kb on + strand, within Ac3H11_905at 20.381 kb on + strand, within Ac3H11_905at 20.381 kb on + strand, within Ac3H11_905at 20.381 kb on + strand, within Ac3H11_905at 20.382 kb on - strand, within Ac3H11_905at 20.382 kb on - strand, within Ac3H11_905at 20.540 kb on + strand, within Ac3H11_905at 20.540 kb on + strand, within Ac3H11_905at 20.540 kb on + strand, within Ac3H11_905at 20.541 kb on - strand, within Ac3H11_905at 20.541 kb on - strand, within Ac3H11_905at 20.541 kb on - strand, within Ac3H11_905at 20.541 kb on - strand, within Ac3H11_905at 20.541 kb on - strand, within Ac3H11_905at 20.755 kb on + strandat 20.755 kb on + strandat 20.755 kb on + strandat 20.755 kb on + strandat 20.755 kb on + strandat 20.756 kb on - strandat 20.756 kb on - strandat 20.756 kb on - strandat 20.776 kb on + strandat 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.069 kb on + strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.070 kb on - strand, within Ac3H11_906at 21.684 kb on + strand, within Ac3H11_907at 21.684 kb on + strand, within Ac3H11_907at 21.685 kb on - strand, within Ac3H11_907at 21.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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20,001 - Ac3H11_905 0.26 +0.6
20,081 + Ac3H11_905 0.34 +0.4
20,081 + Ac3H11_905 0.34 +0.0
20,081 + Ac3H11_905 0.34 +0.0
20,081 + Ac3H11_905 0.34 +1.1
20,081 + Ac3H11_905 0.34 +0.6
20,081 + Ac3H11_905 0.34 +0.0
20,081 + Ac3H11_905 0.34 +0.4
20,082 - Ac3H11_905 0.35 +0.6
20,082 - Ac3H11_905 0.35 +2.0
20,082 - Ac3H11_905 0.35 -0.9
20,082 - Ac3H11_905 0.35 +1.6
20,082 - Ac3H11_905 0.35 +0.3
20,153 + Ac3H11_905 0.42 -1.5
20,154 - Ac3H11_905 0.42 -0.5
20,354 + Ac3H11_905 0.62 -0.0
20,354 + Ac3H11_905 0.62 +0.9
20,354 + Ac3H11_905 0.62 +1.0
20,354 + Ac3H11_905 0.62 +1.4
20,354 + Ac3H11_905 0.62 +0.5
20,354 + Ac3H11_905 0.62 +0.2
20,354 + Ac3H11_905 0.62 -1.4
20,354 + Ac3H11_905 0.62 +0.0
20,354 + Ac3H11_905 0.62 +0.6
20,354 + Ac3H11_905 0.62 -0.1
20,354 + Ac3H11_905 0.62 -3.3
20,355 - Ac3H11_905 0.62 +0.5
20,355 - Ac3H11_905 0.62 +1.4
20,355 - Ac3H11_905 0.62 +0.7
20,355 - Ac3H11_905 0.62 +0.5
20,355 - Ac3H11_905 0.62 -1.0
20,355 - Ac3H11_905 0.62 +0.5
20,355 - Ac3H11_905 0.62 +1.0
20,355 - Ac3H11_905 0.62 +1.1
20,381 + Ac3H11_905 0.64 -0.6
20,381 + Ac3H11_905 0.64 -0.5
20,381 + Ac3H11_905 0.64 -0.9
20,381 + Ac3H11_905 0.64 -2.2
20,382 - Ac3H11_905 0.64 +0.6
20,382 - Ac3H11_905 0.64 +0.1
20,540 + Ac3H11_905 0.80 +0.5
20,540 + Ac3H11_905 0.80 -0.6
20,540 + Ac3H11_905 0.80 -3.7
20,541 - Ac3H11_905 0.80 +0.5
20,541 - Ac3H11_905 0.80 +0.2
20,541 - Ac3H11_905 0.80 +0.0
20,541 - Ac3H11_905 0.80 +0.5
20,541 - Ac3H11_905 0.80 -0.4
20,755 + -1.4
20,755 + -0.8
20,755 + -0.1
20,755 + +0.6
20,755 + +0.4
20,756 - -1.8
20,756 - -0.2
20,756 - +0.6
20,776 + +0.8
21,069 + Ac3H11_906 0.48 +0.4
21,069 + Ac3H11_906 0.48 -2.4
21,069 + Ac3H11_906 0.48 +0.9
21,069 + Ac3H11_906 0.48 -0.5
21,069 + Ac3H11_906 0.48 -0.5
21,069 + Ac3H11_906 0.48 -0.8
21,069 + Ac3H11_906 0.48 +0.3
21,069 + Ac3H11_906 0.48 +0.6
21,069 + Ac3H11_906 0.48 -0.3
21,069 + Ac3H11_906 0.48 -0.4
21,070 - Ac3H11_906 0.48 -1.0
21,070 - Ac3H11_906 0.48 +0.3
21,070 - Ac3H11_906 0.48 +0.4
21,070 - Ac3H11_906 0.48 -0.7
21,070 - Ac3H11_906 0.48 -2.1
21,070 - Ac3H11_906 0.48 +0.2
21,070 - Ac3H11_906 0.48 +1.2
21,684 + Ac3H11_907 0.46 -2.6
21,684 + Ac3H11_907 0.46 -0.9
21,685 - Ac3H11_907 0.46 +0.4
21,952 + +2.3

Or see this region's nucleotide sequence