Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_867

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_866 and Ac3H11_867 overlap by 4 nucleotidesAc3H11_867 and Ac3H11_868 are separated by 105 nucleotides Ac3H11_866 - ATP-dependent DNA helicase Rep, at 147,684 to 149,663 _866 Ac3H11_867 - hypothetical protein, at 149,660 to 150,061 _867 Ac3H11_868 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 150,167 to 151,366 _868 Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 149.862 kb on + strand, within Ac3H11_867at 150.011 kb on + strand, within Ac3H11_867at 150.575 kb on + strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.576 kb on - strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.593 kb on + strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.594 kb on - strand, within Ac3H11_868at 150.701 kb on + strand, within Ac3H11_868at 150.716 kb on + strand, within Ac3H11_868at 150.717 kb on - strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.845 kb on + strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.846 kb on - strand, within Ac3H11_868at 150.851 kb on + strand, within Ac3H11_868at 150.851 kb on + strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 150.852 kb on - strand, within Ac3H11_868at 151.049 kb on + strand, within Ac3H11_868at 151.050 kb on - strand, within Ac3H11_868at 151.050 kb on - strand, within Ac3H11_868

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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149,862 + Ac3H11_867 0.50 +1.2
150,011 + Ac3H11_867 0.87 +0.4
150,575 + Ac3H11_868 0.34 +0.5
150,576 - Ac3H11_868 0.34 -0.2
150,576 - Ac3H11_868 0.34 -0.1
150,576 - Ac3H11_868 0.34 +0.2
150,576 - Ac3H11_868 0.34 -0.5
150,576 - Ac3H11_868 0.34 +0.9
150,593 + Ac3H11_868 0.35 +0.1
150,593 + Ac3H11_868 0.35 -1.1
150,593 + Ac3H11_868 0.35 +1.3
150,593 + Ac3H11_868 0.35 -3.2
150,593 + Ac3H11_868 0.35 +1.2
150,593 + Ac3H11_868 0.35 +0.4
150,593 + Ac3H11_868 0.35 +0.6
150,593 + Ac3H11_868 0.35 +1.2
150,593 + Ac3H11_868 0.35 -1.3
150,593 + Ac3H11_868 0.35 -2.1
150,593 + Ac3H11_868 0.35 -1.6
150,593 + Ac3H11_868 0.35 +1.5
150,593 + Ac3H11_868 0.35 +0.9
150,593 + Ac3H11_868 0.35 +0.5
150,593 + Ac3H11_868 0.35 +0.1
150,593 + Ac3H11_868 0.35 +0.2
150,593 + Ac3H11_868 0.35 -0.0
150,594 - Ac3H11_868 0.36 -2.6
150,594 - Ac3H11_868 0.36 -1.5
150,594 - Ac3H11_868 0.36 +1.9
150,594 - Ac3H11_868 0.36 +0.8
150,594 - Ac3H11_868 0.36 -0.3
150,594 - Ac3H11_868 0.36 +1.2
150,594 - Ac3H11_868 0.36 -3.4
150,594 - Ac3H11_868 0.36 -0.6
150,594 - Ac3H11_868 0.36 +0.5
150,594 - Ac3H11_868 0.36 +0.3
150,594 - Ac3H11_868 0.36 +0.2
150,701 + Ac3H11_868 0.45 +0.1
150,716 + Ac3H11_868 0.46 +0.2
150,717 - Ac3H11_868 0.46 +0.6
150,845 + Ac3H11_868 0.56 +1.1
150,845 + Ac3H11_868 0.56 +1.1
150,845 + Ac3H11_868 0.56 -0.5
150,845 + Ac3H11_868 0.56 -0.3
150,845 + Ac3H11_868 0.56 -1.3
150,846 - Ac3H11_868 0.57 +0.4
150,846 - Ac3H11_868 0.57 -0.2
150,846 - Ac3H11_868 0.57 +0.7
150,846 - Ac3H11_868 0.57 +0.6
150,846 - Ac3H11_868 0.57 +1.6
150,846 - Ac3H11_868 0.57 -0.6
150,846 - Ac3H11_868 0.57 -1.1
150,851 + Ac3H11_868 0.57 -0.1
150,851 + Ac3H11_868 0.57 -2.1
150,852 - Ac3H11_868 0.57 -1.8
150,852 - Ac3H11_868 0.57 -1.6
150,852 - Ac3H11_868 0.57 -0.5
150,852 - Ac3H11_868 0.57 +0.4
150,852 - Ac3H11_868 0.57 -0.6
150,852 - Ac3H11_868 0.57 -0.0
150,852 - Ac3H11_868 0.57 -0.3
151,049 + Ac3H11_868 0.73 +1.1
151,050 - Ac3H11_868 0.74 +0.5
151,050 - Ac3H11_868 0.74 -1.1

Or see this region's nucleotide sequence