Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_516

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_515 and Ac3H11_516 are separated by 72 nucleotidesAc3H11_516 and Ac3H11_517 are separated by 41 nucleotides Ac3H11_515 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 216,327 to 218,090 _515 Ac3H11_516 - COGs COG3146, at 218,163 to 219,503 _516 Ac3H11_517 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 219,545 to 221,203 _517 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.376 kb on + strand, within Ac3H11_515at 217.377 kb on - strand, within Ac3H11_515at 217.377 kb on - strand, within Ac3H11_515at 217.985 kb on + strandat 218.096 kb on + strandat 218.096 kb on + strandat 218.097 kb on - strandat 218.097 kb on - strandat 218.209 kb on + strandat 218.210 kb on - strandat 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.373 kb on + strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.374 kb on - strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.395 kb on + strand, within Ac3H11_516at 218.396 kb on - strand, within Ac3H11_516at 218.396 kb on - strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.398 kb on + strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.399 kb on - strand, within Ac3H11_516at 218.641 kb on + strand, within Ac3H11_516at 218.653 kb on + strand, within Ac3H11_516at 219.154 kb on + strand, within Ac3H11_516at 219.154 kb on + strand, within Ac3H11_516at 219.157 kb on + strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.158 kb on - strand, within Ac3H11_516at 219.178 kb on + strand, within Ac3H11_516at 219.178 kb on + strand, within Ac3H11_516at 219.179 kb on - strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.208 kb on + strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.209 kb on - strand, within Ac3H11_516at 219.218 kb on - strand, within Ac3H11_516at 219.235 kb on + strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.236 kb on - strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.343 kb on + strand, within Ac3H11_516at 219.344 kb on - strand, within Ac3H11_516at 219.344 kb on - strand, within Ac3H11_516at 219.411 kb on + strandat 219.411 kb on + strandat 219.638 kb on + strandat 219.639 kb on - strandat 219.689 kb on + strandat 219.893 kb on + strand, within Ac3H11_517at 219.893 kb on + strand, within Ac3H11_517at 219.893 kb on + strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.894 kb on - strand, within Ac3H11_517at 219.918 kb on - strand, within Ac3H11_517at 219.942 kb on - strand, within Ac3H11_517at 219.942 kb on - strand, within Ac3H11_517at 220.167 kb on - strand, within Ac3H11_517at 220.167 kb on - strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.391 kb on + strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.392 kb on - strand, within Ac3H11_517at 220.473 kb on + strand, within Ac3H11_517at 220.473 kb on + strand, within Ac3H11_517at 220.474 kb on - strand, within Ac3H11_517at 220.474 kb on - strand, within Ac3H11_517

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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217,376 + Ac3H11_515 0.59 +1.1
217,376 + Ac3H11_515 0.59 -0.4
217,376 + Ac3H11_515 0.59 -1.1
217,376 + Ac3H11_515 0.59 -0.1
217,377 - Ac3H11_515 0.60 +1.4
217,377 - Ac3H11_515 0.60 +0.6
217,985 + +0.3
218,096 + -0.1
218,096 + -0.2
218,097 - +0.8
218,097 - -0.6
218,209 + +0.1
218,210 - -0.8
218,373 + Ac3H11_516 0.16 +0.7
218,373 + Ac3H11_516 0.16 +0.1
218,373 + Ac3H11_516 0.16 +1.1
218,373 + Ac3H11_516 0.16 -0.1
218,373 + Ac3H11_516 0.16 +0.1
218,373 + Ac3H11_516 0.16 +0.2
218,374 - Ac3H11_516 0.16 +0.0
218,374 - Ac3H11_516 0.16 +0.0
218,374 - Ac3H11_516 0.16 -1.6
218,374 - Ac3H11_516 0.16 -1.3
218,374 - Ac3H11_516 0.16 +2.0
218,395 + Ac3H11_516 0.17 -0.6
218,395 + Ac3H11_516 0.17 -2.2
218,395 + Ac3H11_516 0.17 -0.1
218,396 - Ac3H11_516 0.17 -0.5
218,396 - Ac3H11_516 0.17 +0.8
218,398 + Ac3H11_516 0.18 -1.6
218,398 + Ac3H11_516 0.18 +0.0
218,398 + Ac3H11_516 0.18 -2.1
218,398 + Ac3H11_516 0.18 -0.7
218,398 + Ac3H11_516 0.18 -0.0
218,398 + Ac3H11_516 0.18 +0.7
218,399 - Ac3H11_516 0.18 +0.8
218,399 - Ac3H11_516 0.18 -0.1
218,399 - Ac3H11_516 0.18 -1.1
218,399 - Ac3H11_516 0.18 +1.2
218,399 - Ac3H11_516 0.18 -1.1
218,399 - Ac3H11_516 0.18 -0.2
218,641 + Ac3H11_516 0.36 +0.5
218,653 + Ac3H11_516 0.37 -0.9
219,154 + Ac3H11_516 0.74 +1.1
219,154 + Ac3H11_516 0.74 +0.4
219,157 + Ac3H11_516 0.74 +0.8
219,158 - Ac3H11_516 0.74 -0.6
219,158 - Ac3H11_516 0.74 +0.4
219,158 - Ac3H11_516 0.74 -1.3
219,178 + Ac3H11_516 0.76 -1.2
219,178 + Ac3H11_516 0.76 +0.7
219,179 - Ac3H11_516 0.76 +0.2
219,208 + Ac3H11_516 0.78 -0.6
219,208 + Ac3H11_516 0.78 -0.6
219,208 + Ac3H11_516 0.78 -0.1
219,209 - Ac3H11_516 0.78 -1.1
219,209 - Ac3H11_516 0.78 +0.9
219,209 - Ac3H11_516 0.78 -0.9
219,218 - Ac3H11_516 0.79 -1.3
219,235 + Ac3H11_516 0.80 -1.0
219,236 - Ac3H11_516 0.80 +0.8
219,236 - Ac3H11_516 0.80 -0.8
219,236 - Ac3H11_516 0.80 +0.4
219,236 - Ac3H11_516 0.80 -1.0
219,343 + Ac3H11_516 0.88 -0.3
219,343 + Ac3H11_516 0.88 +1.1
219,343 + Ac3H11_516 0.88 +0.6
219,343 + Ac3H11_516 0.88 +0.7
219,344 - Ac3H11_516 0.88 +0.1
219,344 - Ac3H11_516 0.88 -1.6
219,411 + -0.1
219,411 + +0.9
219,638 + -2.0
219,639 - -1.3
219,689 + +0.2
219,893 + Ac3H11_517 0.21 +0.4
219,893 + Ac3H11_517 0.21 -0.2
219,893 + Ac3H11_517 0.21 -2.9
219,894 - Ac3H11_517 0.21 -0.6
219,894 - Ac3H11_517 0.21 +0.4
219,894 - Ac3H11_517 0.21 -1.5
219,894 - Ac3H11_517 0.21 -1.4
219,894 - Ac3H11_517 0.21 -1.0
219,918 - Ac3H11_517 0.22 -3.3
219,942 - Ac3H11_517 0.24 -1.2
219,942 - Ac3H11_517 0.24 -2.7
220,167 - Ac3H11_517 0.37 -1.0
220,167 - Ac3H11_517 0.37 -1.6
220,391 + Ac3H11_517 0.51 -0.2
220,391 + Ac3H11_517 0.51 +0.0
220,391 + Ac3H11_517 0.51 -0.1
220,392 - Ac3H11_517 0.51 -1.1
220,392 - Ac3H11_517 0.51 +0.6
220,392 - Ac3H11_517 0.51 +0.4
220,473 + Ac3H11_517 0.56 +0.1
220,473 + Ac3H11_517 0.56 -2.0
220,474 - Ac3H11_517 0.56 +1.4
220,474 - Ac3H11_517 0.56 -2.3

Or see this region's nucleotide sequence