Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4601

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4600 and Ac3H11_4601 overlap by 8 nucleotidesAc3H11_4601 and Ac3H11_4602 are separated by 435 nucleotidesAc3H11_4602 and Ac3H11_4603 are separated by 132 nucleotides Ac3H11_4600 - Heavy metal sensor histidine kinase, at 200,272 to 201,678 _4600 Ac3H11_4601 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 201,671 to 202,933 _4601 Ac3H11_4602 - Flagellar hook-basal body complex protein FliE, at 203,369 to 203,482 _4602 Ac3H11_4603 - hypothetical protein, at 203,615 to 204,142 _4603 Position (kb) 201 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 200.705 kb on + strand, within Ac3H11_4600at 200.705 kb on + strand, within Ac3H11_4600at 200.711 kb on + strand, within Ac3H11_4600at 200.711 kb on + strand, within Ac3H11_4600at 200.711 kb on + strand, within Ac3H11_4600at 200.711 kb on + strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.712 kb on - strand, within Ac3H11_4600at 200.740 kb on + strand, within Ac3H11_4600at 200.740 kb on + strand, within Ac3H11_4600at 200.740 kb on + strand, within Ac3H11_4600at 200.740 kb on + strand, within Ac3H11_4600at 200.740 kb on + strand, within Ac3H11_4600at 200.741 kb on - strand, within Ac3H11_4600at 200.767 kb on + strand, within Ac3H11_4600at 200.767 kb on + strand, within Ac3H11_4600at 200.768 kb on - strand, within Ac3H11_4600at 200.787 kb on - strand, within Ac3H11_4600at 201.063 kb on + strand, within Ac3H11_4600at 201.063 kb on + strand, within Ac3H11_4600at 201.088 kb on + strand, within Ac3H11_4600at 201.088 kb on + strand, within Ac3H11_4600at 201.088 kb on + strand, within Ac3H11_4600at 201.089 kb on - strand, within Ac3H11_4600at 201.089 kb on - strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.098 kb on + strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.099 kb on - strand, within Ac3H11_4600at 201.121 kb on + strand, within Ac3H11_4600at 201.121 kb on + strand, within Ac3H11_4600at 201.121 kb on + strand, within Ac3H11_4600at 201.121 kb on + strand, within Ac3H11_4600at 201.121 kb on + strand, within Ac3H11_4600at 201.183 kb on + strand, within Ac3H11_4600at 201.183 kb on + strand, within Ac3H11_4600at 201.183 kb on + strand, within Ac3H11_4600at 201.183 kb on + strand, within Ac3H11_4600at 201.183 kb on + strand, within Ac3H11_4600at 201.184 kb on - strand, within Ac3H11_4600at 201.184 kb on - strand, within Ac3H11_4600at 201.184 kb on - strand, within Ac3H11_4600at 201.184 kb on - strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strandat 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.431 kb on + strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.432 kb on - strand, within Ac3H11_4600at 201.450 kb on + strand, within Ac3H11_4600at 201.450 kb on + strand, within Ac3H11_4600at 201.450 kb on + strand, within Ac3H11_4600at 201.450 kb on + strand, within Ac3H11_4600at 201.451 kb on - strand, within Ac3H11_4600at 201.451 kb on - strand, within Ac3H11_4600at 201.451 kb on - strand, within Ac3H11_4600at 201.451 kb on - strand, within Ac3H11_4600at 201.451 kb on - strand, within Ac3H11_4600at 201.628 kb on + strandat 201.628 kb on + strandat 201.628 kb on + strandat 201.628 kb on + strandat 201.628 kb on + strandat 201.629 kb on - strandat 201.629 kb on - strandat 201.629 kb on - strandat 201.694 kb on + strandat 201.695 kb on - strandat 201.695 kb on - strandat 201.695 kb on - strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.728 kb on + strandat 201.729 kb on - strandat 201.729 kb on - strandat 201.778 kb on - strandat 201.836 kb on + strand, within Ac3H11_4601at 201.950 kb on + strand, within Ac3H11_4601at 201.951 kb on - strand, within Ac3H11_4601at 201.951 kb on - strand, within Ac3H11_4601at 201.951 kb on - strand, within Ac3H11_4601at 201.965 kb on - strand, within Ac3H11_4601at 202.038 kb on + strand, within Ac3H11_4601at 202.039 kb on - strand, within Ac3H11_4601at 202.039 kb on - strand, within Ac3H11_4601at 202.039 kb on - strand, within Ac3H11_4601at 202.039 kb on - strand, within Ac3H11_4601at 202.097 kb on + strand, within Ac3H11_4601at 202.097 kb on + strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.098 kb on - strand, within Ac3H11_4601at 202.129 kb on + strand, within Ac3H11_4601at 202.129 kb on + strand, within Ac3H11_4601at 202.129 kb on + strand, within Ac3H11_4601at 202.129 kb on + strand, within Ac3H11_4601at 202.130 kb on - strand, within Ac3H11_4601at 202.199 kb on + strand, within Ac3H11_4601at 202.199 kb on + strand, within Ac3H11_4601at 202.199 kb on + strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.200 kb on - strand, within Ac3H11_4601at 202.208 kb on - strand, within Ac3H11_4601at 202.242 kb on - strand, within Ac3H11_4601at 202.254 kb on + strand, within Ac3H11_4601at 202.255 kb on - strand, within Ac3H11_4601at 202.255 kb on - strand, within Ac3H11_4601at 202.447 kb on + strand, within Ac3H11_4601at 202.527 kb on - strand, within Ac3H11_4601at 202.617 kb on + strand, within Ac3H11_4601at 202.618 kb on - strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.627 kb on + strand, within Ac3H11_4601at 202.628 kb on - strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.682 kb on + strand, within Ac3H11_4601at 202.838 kb on + strandat 202.847 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.046 kb on + strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.054 kb on - strandat 203.056 kb on + strandat 203.056 kb on + strandat 203.056 kb on + strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.057 kb on - strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.075 kb on + strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.076 kb on - strandat 203.096 kb on + strandat 203.097 kb on - strandat 203.118 kb on - strandat 203.404 kb on + strand, within Ac3H11_4602at 203.405 kb on - strand, within Ac3H11_4602at 203.453 kb on + strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.454 kb on - strand, within Ac3H11_4602at 203.497 kb on + strandat 203.497 kb on + strandat 203.497 kb on + strandat 203.498 kb on - strandat 203.498 kb on - strandat 203.777 kb on + strand, within Ac3H11_4603at 203.777 kb on + strand, within Ac3H11_4603at 203.777 kb on + strand, within Ac3H11_4603at 203.778 kb on - strand, within Ac3H11_4603at 203.778 kb on - strand, within Ac3H11_4603at 203.884 kb on + strand, within Ac3H11_4603

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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200,705 + Ac3H11_4600 0.31 +0.8
200,705 + Ac3H11_4600 0.31 +0.9
200,711 + Ac3H11_4600 0.31 -0.2
200,711 + Ac3H11_4600 0.31 +0.5
200,711 + Ac3H11_4600 0.31 +0.1
200,711 + Ac3H11_4600 0.31 +0.2
200,712 - Ac3H11_4600 0.31 -1.4
200,712 - Ac3H11_4600 0.31 -1.0
200,712 - Ac3H11_4600 0.31 -0.4
200,712 - Ac3H11_4600 0.31 -2.1
200,712 - Ac3H11_4600 0.31 +1.0
200,712 - Ac3H11_4600 0.31 -0.5
200,712 - Ac3H11_4600 0.31 -0.2
200,712 - Ac3H11_4600 0.31 -1.0
200,740 + Ac3H11_4600 0.33 +0.2
200,740 + Ac3H11_4600 0.33 -2.2
200,740 + Ac3H11_4600 0.33 -1.3
200,740 + Ac3H11_4600 0.33 +1.4
200,740 + Ac3H11_4600 0.33 -0.6
200,741 - Ac3H11_4600 0.33 +1.7
200,767 + Ac3H11_4600 0.35 -0.9
200,767 + Ac3H11_4600 0.35 -2.5
200,768 - Ac3H11_4600 0.35 +0.5
200,787 - Ac3H11_4600 0.37 -0.3
201,063 + Ac3H11_4600 0.56 +0.3
201,063 + Ac3H11_4600 0.56 -0.9
201,088 + Ac3H11_4600 0.58 -0.2
201,088 + Ac3H11_4600 0.58 -2.3
201,088 + Ac3H11_4600 0.58 -0.6
201,089 - Ac3H11_4600 0.58 -1.8
201,089 - Ac3H11_4600 0.58 +0.0
201,098 + Ac3H11_4600 0.59 -1.6
201,098 + Ac3H11_4600 0.59 -0.3
201,098 + Ac3H11_4600 0.59 -0.4
201,098 + Ac3H11_4600 0.59 -0.2
201,098 + Ac3H11_4600 0.59 +0.1
201,098 + Ac3H11_4600 0.59 -0.4
201,098 + Ac3H11_4600 0.59 +0.2
201,098 + Ac3H11_4600 0.59 -1.1
201,099 - Ac3H11_4600 0.59 -1.0
201,099 - Ac3H11_4600 0.59 -1.2
201,099 - Ac3H11_4600 0.59 +1.0
201,099 - Ac3H11_4600 0.59 +0.6
201,099 - Ac3H11_4600 0.59 +0.9
201,099 - Ac3H11_4600 0.59 -0.7
201,099 - Ac3H11_4600 0.59 +0.5
201,099 - Ac3H11_4600 0.59 -2.0
201,099 - Ac3H11_4600 0.59 -0.8
201,121 + Ac3H11_4600 0.60 -0.0
201,121 + Ac3H11_4600 0.60 -2.8
201,121 + Ac3H11_4600 0.60 -1.0
201,121 + Ac3H11_4600 0.60 +1.5
201,121 + Ac3H11_4600 0.60 -0.3
201,183 + Ac3H11_4600 0.65 -0.0
201,183 + Ac3H11_4600 0.65 -0.9
201,183 + Ac3H11_4600 0.65 +0.6
201,183 + Ac3H11_4600 0.65 +0.5
201,183 + Ac3H11_4600 0.65 -0.5
201,184 - Ac3H11_4600 0.65 -0.4
201,184 - Ac3H11_4600 0.65 -0.3
201,184 - Ac3H11_4600 0.65 -0.7
201,184 - Ac3H11_4600 0.65 -0.5
201,431 + Ac3H11_4600 0.82 -0.4
201,431 + Ac3H11_4600 0.82 +0.7
201,431 + Ac3H11_4600 0.82 -0.6
201,431 + Ac3H11_4600 0.82 -1.6
201,431 + Ac3H11_4600 0.82 -0.3
201,431 + Ac3H11_4600 0.82 -0.4
201,431 + +0.6
201,431 + Ac3H11_4600 0.82 +0.2
201,431 + Ac3H11_4600 0.82 +0.5
201,431 + Ac3H11_4600 0.82 +1.3
201,431 + Ac3H11_4600 0.82 -3.2
201,432 - Ac3H11_4600 0.82 +1.4
201,432 - Ac3H11_4600 0.82 +0.3
201,432 - Ac3H11_4600 0.82 -3.1
201,432 - Ac3H11_4600 0.82 -0.2
201,432 - Ac3H11_4600 0.82 -1.8
201,432 - Ac3H11_4600 0.82 -0.9
201,450 + Ac3H11_4600 0.84 +0.3
201,450 + Ac3H11_4600 0.84 +0.3
201,450 + Ac3H11_4600 0.84 -0.0
201,450 + Ac3H11_4600 0.84 +0.1
201,451 - Ac3H11_4600 0.84 +0.3
201,451 - Ac3H11_4600 0.84 +1.8
201,451 - Ac3H11_4600 0.84 +0.3
201,451 - Ac3H11_4600 0.84 -2.1
201,451 - Ac3H11_4600 0.84 +0.1
201,628 + -0.3
201,628 + +1.2
201,628 + +0.1
201,628 + -0.7
201,628 + -0.1
201,629 - -0.7
201,629 - +0.4
201,629 - -1.2
201,694 + -0.0
201,695 - -1.1
201,695 - -0.8
201,695 - +0.7
201,728 + +1.1
201,728 + -1.1
201,728 + -0.2
201,728 + +1.9
201,728 + -1.4
201,728 + -0.6
201,728 + -0.4
201,729 - -0.3
201,729 - +0.2
201,778 - -2.1
201,836 + Ac3H11_4601 0.13 -0.1
201,950 + Ac3H11_4601 0.22 +0.2
201,951 - Ac3H11_4601 0.22 +0.6
201,951 - Ac3H11_4601 0.22 -0.5
201,951 - Ac3H11_4601 0.22 -1.1
201,965 - Ac3H11_4601 0.23 +1.6
202,038 + Ac3H11_4601 0.29 +0.8
202,039 - Ac3H11_4601 0.29 +0.1
202,039 - Ac3H11_4601 0.29 +0.7
202,039 - Ac3H11_4601 0.29 +1.1
202,039 - Ac3H11_4601 0.29 +0.6
202,097 + Ac3H11_4601 0.34 +0.2
202,097 + Ac3H11_4601 0.34 -0.1
202,098 - Ac3H11_4601 0.34 +2.4
202,098 - Ac3H11_4601 0.34 -0.1
202,098 - Ac3H11_4601 0.34 -0.1
202,098 - Ac3H11_4601 0.34 -0.2
202,098 - Ac3H11_4601 0.34 -0.0
202,098 - Ac3H11_4601 0.34 +0.4
202,129 + Ac3H11_4601 0.36 +1.6
202,129 + Ac3H11_4601 0.36 -0.1
202,129 + Ac3H11_4601 0.36 +0.1
202,129 + Ac3H11_4601 0.36 +1.7
202,130 - Ac3H11_4601 0.36 +0.6
202,199 + Ac3H11_4601 0.42 -0.0
202,199 + Ac3H11_4601 0.42 -0.4
202,199 + Ac3H11_4601 0.42 -1.3
202,200 - Ac3H11_4601 0.42 +0.5
202,200 - Ac3H11_4601 0.42 +0.5
202,200 - Ac3H11_4601 0.42 +1.1
202,200 - Ac3H11_4601 0.42 -0.0
202,200 - Ac3H11_4601 0.42 -0.5
202,200 - Ac3H11_4601 0.42 +1.0
202,200 - Ac3H11_4601 0.42 -1.7
202,208 - Ac3H11_4601 0.43 +0.2
202,242 - Ac3H11_4601 0.45 -0.0
202,254 + Ac3H11_4601 0.46 -0.4
202,255 - Ac3H11_4601 0.46 +0.5
202,255 - Ac3H11_4601 0.46 -0.4
202,447 + Ac3H11_4601 0.61 -0.9
202,527 - Ac3H11_4601 0.68 -1.4
202,617 + Ac3H11_4601 0.75 -1.9
202,618 - Ac3H11_4601 0.75 -1.8
202,627 + Ac3H11_4601 0.76 +0.6
202,627 + Ac3H11_4601 0.76 +0.8
202,627 + Ac3H11_4601 0.76 -0.4
202,628 - Ac3H11_4601 0.76 -0.0
202,682 + Ac3H11_4601 0.80 -0.0
202,682 + Ac3H11_4601 0.80 -0.5
202,682 + Ac3H11_4601 0.80 -0.3
202,838 + -1.0
202,847 + -0.0
203,046 + +0.8
203,046 + -0.2
203,046 + +1.5
203,046 + -0.3
203,047 - +0.6
203,047 - -0.8
203,054 - +0.9
203,054 - -0.4
203,054 - +0.4
203,054 - +1.3
203,056 + -3.6
203,056 + +0.8
203,056 + -0.7
203,057 - -2.5
203,057 - -1.2
203,057 - -1.8
203,057 - +0.2
203,057 - -1.6
203,075 + -0.6
203,075 + +0.8
203,075 + -0.2
203,075 + +0.6
203,076 - -2.5
203,076 - +1.3
203,076 - -0.3
203,076 - -0.7
203,096 + -0.7
203,097 - -0.3
203,118 - -2.3
203,404 + Ac3H11_4602 0.31 +0.3
203,405 - Ac3H11_4602 0.32 -2.2
203,453 + Ac3H11_4602 0.74 +0.2
203,454 - Ac3H11_4602 0.75 +0.0
203,454 - Ac3H11_4602 0.75 +0.3
203,454 - Ac3H11_4602 0.75 -3.9
203,454 - Ac3H11_4602 0.75 +0.9
203,454 - Ac3H11_4602 0.75 -1.2
203,454 - Ac3H11_4602 0.75 -1.6
203,454 - Ac3H11_4602 0.75 -0.3
203,497 + -1.0
203,497 + +0.5
203,497 + +0.1
203,498 - +0.4
203,498 - -2.8
203,777 + Ac3H11_4603 0.31 +1.7
203,777 + Ac3H11_4603 0.31 +0.2
203,777 + Ac3H11_4603 0.31 +0.0
203,778 - Ac3H11_4603 0.31 -0.2
203,778 - Ac3H11_4603 0.31 -1.5
203,884 + Ac3H11_4603 0.51 -0.9

Or see this region's nucleotide sequence