Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4486

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4484 and Ac3H11_4485 are separated by 20 nucleotidesAc3H11_4485 and Ac3H11_4486 are separated by 112 nucleotidesAc3H11_4486 and Ac3H11_4487 are separated by 15 nucleotides Ac3H11_4484 - Glycine cleavage system transcriptional activator GcvA, at 70,699 to 71,604 _4484 Ac3H11_4485 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 71,625 to 72,476 _4485 Ac3H11_4486 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 72,589 to 74,889 _4486 Ac3H11_4487 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 74,905 to 75,825 _4487 Position (kb) 72 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.522 kb on + strandat 72.523 kb on - strandat 72.598 kb on + strandat 72.598 kb on + strandat 72.598 kb on + strandat 72.598 kb on + strandat 72.598 kb on + strandat 72.599 kb on - strandat 72.599 kb on - strandat 72.706 kb on + strandat 72.706 kb on + strandat 72.706 kb on + strandat 72.707 kb on - strandat 73.003 kb on + strand, within Ac3H11_4486at 73.003 kb on + strand, within Ac3H11_4486at 73.003 kb on + strand, within Ac3H11_4486at 73.003 kb on + strand, within Ac3H11_4486at 73.003 kb on + strand, within Ac3H11_4486at 73.004 kb on - strand, within Ac3H11_4486at 73.004 kb on - strand, within Ac3H11_4486at 73.004 kb on - strand, within Ac3H11_4486at 73.046 kb on + strand, within Ac3H11_4486at 73.046 kb on + strand, within Ac3H11_4486at 73.046 kb on + strand, within Ac3H11_4486at 73.286 kb on - strand, within Ac3H11_4486at 73.355 kb on - strand, within Ac3H11_4486at 73.355 kb on - strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.492 kb on + strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.493 kb on - strand, within Ac3H11_4486at 73.702 kb on + strand, within Ac3H11_4486at 73.702 kb on + strand, within Ac3H11_4486at 73.703 kb on - strand, within Ac3H11_4486at 73.703 kb on - strand, within Ac3H11_4486at 73.703 kb on - strand, within Ac3H11_4486at 74.002 kb on + strand, within Ac3H11_4486at 74.002 kb on + strand, within Ac3H11_4486at 74.003 kb on - strand, within Ac3H11_4486at 74.003 kb on - strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.131 kb on + strand, within Ac3H11_4486at 74.132 kb on - strand, within Ac3H11_4486at 74.132 kb on - strand, within Ac3H11_4486at 74.132 kb on - strand, within Ac3H11_4486at 74.132 kb on - strand, within Ac3H11_4486at 74.132 kb on - strand, within Ac3H11_4486at 74.134 kb on + strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.135 kb on - strand, within Ac3H11_4486at 74.560 kb on + strand, within Ac3H11_4486at 74.561 kb on - strand, within Ac3H11_4486at 74.561 kb on - strand, within Ac3H11_4486at 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.771 kb on - strandat 74.780 kb on - strandat 74.780 kb on - strandat 74.887 kb on + strandat 74.887 kb on + strandat 74.887 kb on + strandat 75.440 kb on + strand, within Ac3H11_4487at 75.440 kb on + strand, within Ac3H11_4487at 75.441 kb on - strand, within Ac3H11_4487at 75.702 kb on + strand, within Ac3H11_4487at 75.703 kb on + strand, within Ac3H11_4487at 75.703 kb on + strand, within Ac3H11_4487at 75.704 kb on - strand, within Ac3H11_4487at 75.837 kb on - strandat 75.837 kb on - strandat 75.886 kb on + strandat 75.886 kb on + strandat 75.886 kb on + strandat 75.886 kb on + strandat 75.886 kb on + strandat 75.886 kb on + strandat 75.887 kb on - strandat 75.887 kb on - strandat 75.887 kb on - strandat 75.887 kb on - strandat 75.887 kb on - strandat 75.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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72,522 + -0.0
72,523 - +1.9
72,598 + -1.1
72,598 + +0.6
72,598 + -1.0
72,598 + -2.6
72,598 + -0.9
72,599 - -1.7
72,599 - -2.9
72,706 + -0.4
72,706 + -1.3
72,706 + -1.7
72,707 - +1.3
73,003 + Ac3H11_4486 0.18 -0.6
73,003 + Ac3H11_4486 0.18 -1.3
73,003 + Ac3H11_4486 0.18 -0.4
73,003 + Ac3H11_4486 0.18 +1.8
73,003 + Ac3H11_4486 0.18 +0.6
73,004 - Ac3H11_4486 0.18 +0.5
73,004 - Ac3H11_4486 0.18 -2.2
73,004 - Ac3H11_4486 0.18 -0.8
73,046 + Ac3H11_4486 0.20 +0.6
73,046 + Ac3H11_4486 0.20 +0.9
73,046 + Ac3H11_4486 0.20 -0.2
73,286 - Ac3H11_4486 0.30 -2.8
73,355 - Ac3H11_4486 0.33 -0.4
73,355 - Ac3H11_4486 0.33 -0.2
73,492 + Ac3H11_4486 0.39 -0.7
73,492 + Ac3H11_4486 0.39 -1.1
73,492 + Ac3H11_4486 0.39 -0.0
73,492 + Ac3H11_4486 0.39 -0.9
73,492 + Ac3H11_4486 0.39 -1.9
73,492 + Ac3H11_4486 0.39 -2.0
73,492 + Ac3H11_4486 0.39 +0.0
73,493 - Ac3H11_4486 0.39 +0.6
73,493 - Ac3H11_4486 0.39 +0.4
73,493 - Ac3H11_4486 0.39 +0.8
73,493 - Ac3H11_4486 0.39 -1.8
73,493 - Ac3H11_4486 0.39 -0.4
73,493 - Ac3H11_4486 0.39 +0.6
73,493 - Ac3H11_4486 0.39 -0.8
73,493 - Ac3H11_4486 0.39 +0.6
73,493 - Ac3H11_4486 0.39 -0.9
73,702 + Ac3H11_4486 0.48 -1.3
73,702 + Ac3H11_4486 0.48 -0.7
73,703 - Ac3H11_4486 0.48 -1.0
73,703 - Ac3H11_4486 0.48 +0.4
73,703 - Ac3H11_4486 0.48 -1.0
74,002 + Ac3H11_4486 0.61 +0.1
74,002 + Ac3H11_4486 0.61 -0.5
74,003 - Ac3H11_4486 0.61 -2.6
74,003 - Ac3H11_4486 0.61 -1.2
74,131 + Ac3H11_4486 0.67 -0.4
74,131 + Ac3H11_4486 0.67 -0.2
74,131 + Ac3H11_4486 0.67 +0.9
74,131 + Ac3H11_4486 0.67 -1.2
74,131 + Ac3H11_4486 0.67 -1.2
74,131 + Ac3H11_4486 0.67 -1.3
74,131 + Ac3H11_4486 0.67 +0.3
74,131 + Ac3H11_4486 0.67 +1.7
74,131 + Ac3H11_4486 0.67 +0.4
74,131 + Ac3H11_4486 0.67 -0.5
74,131 + Ac3H11_4486 0.67 -3.3
74,131 + Ac3H11_4486 0.67 -2.2
74,131 + Ac3H11_4486 0.67 -0.4
74,131 + Ac3H11_4486 0.67 -0.1
74,131 + Ac3H11_4486 0.67 -0.3
74,132 - Ac3H11_4486 0.67 +0.6
74,132 - Ac3H11_4486 0.67 +0.1
74,132 - Ac3H11_4486 0.67 -0.4
74,132 - Ac3H11_4486 0.67 -0.0
74,132 - Ac3H11_4486 0.67 +0.6
74,134 + Ac3H11_4486 0.67 +0.1
74,135 - Ac3H11_4486 0.67 +0.2
74,135 - Ac3H11_4486 0.67 +0.9
74,135 - Ac3H11_4486 0.67 +0.8
74,135 - Ac3H11_4486 0.67 -1.4
74,135 - Ac3H11_4486 0.67 +0.8
74,135 - Ac3H11_4486 0.67 +0.4
74,560 + Ac3H11_4486 0.86 +0.2
74,561 - Ac3H11_4486 0.86 -1.4
74,561 - Ac3H11_4486 0.86 -0.8
74,771 - -1.0
74,771 - -0.8
74,771 - -1.5
74,771 - -1.2
74,771 - -3.4
74,771 - +0.9
74,771 - +1.2
74,771 - -2.1
74,780 - -0.3
74,780 - +0.7
74,887 + -0.3
74,887 + -1.4
74,887 + +0.4
75,440 + Ac3H11_4487 0.58 -0.9
75,440 + Ac3H11_4487 0.58 -0.8
75,441 - Ac3H11_4487 0.58 -0.6
75,702 + Ac3H11_4487 0.87 -1.1
75,703 + Ac3H11_4487 0.87 +1.4
75,703 + Ac3H11_4487 0.87 +1.6
75,704 - Ac3H11_4487 0.87 -0.4
75,837 - -0.6
75,837 - -1.8
75,886 + +0.2
75,886 + +0.2
75,886 + -2.1
75,886 + +0.5
75,886 + +0.6
75,886 + -1.3
75,887 - -2.4
75,887 - +0.0
75,887 - +1.1
75,887 - +0.7
75,887 - -0.6
75,887 - -0.0

Or see this region's nucleotide sequence