Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3841

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3839 and Ac3H11_3840 are separated by 50 nucleotidesAc3H11_3840 and Ac3H11_3841 are separated by 73 nucleotidesAc3H11_3841 and Ac3H11_3842 are separated by 150 nucleotides Ac3H11_3839 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 55,742 to 56,623 _3839 Ac3H11_3840 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 56,674 to 57,519 _3840 Ac3H11_3841 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 57,593 to 58,315 _3841 Ac3H11_3842 - Large protein containing transglutaminase-like domain, at 58,466 to 61,963 _3842 Position (kb) 57 58 59Strain fitness (log2 ratio) -3 -2 -1 0 1at 56.873 kb on - strand, within Ac3H11_3840at 56.956 kb on + strand, within Ac3H11_3840at 57.124 kb on + strand, within Ac3H11_3840at 57.124 kb on + strand, within Ac3H11_3840at 57.242 kb on - strand, within Ac3H11_3840at 57.394 kb on + strand, within Ac3H11_3840at 57.395 kb on - strand, within Ac3H11_3840at 57.550 kb on + strandat 57.886 kb on - strand, within Ac3H11_3841at 57.886 kb on - strand, within Ac3H11_3841at 58.296 kb on - strandat 58.315 kb on + strandat 58.316 kb on - strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.451 kb on + strandat 58.452 kb on - strandat 58.452 kb on - strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.465 kb on + strandat 58.466 kb on - strandat 58.466 kb on - strandat 58.466 kb on - strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.502 kb on + strandat 58.503 kb on - strandat 58.503 kb on - strandat 58.649 kb on + strandat 58.649 kb on + strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.650 kb on - strandat 58.728 kb on - strandat 58.728 kb on - strandat 58.781 kb on + strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.782 kb on - strandat 58.814 kb on + strandat 58.814 kb on + strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.815 kb on - strandat 58.853 kb on + strand, within Ac3H11_3842at 58.854 kb on - strand, within Ac3H11_3842at 59.034 kb on + strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.035 kb on - strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.168 kb on + strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842at 59.169 kb on - strand, within Ac3H11_3842

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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56,873 - Ac3H11_3840 0.24 -2.0
56,956 + Ac3H11_3840 0.33 -1.3
57,124 + Ac3H11_3840 0.53 +0.3
57,124 + Ac3H11_3840 0.53 +0.5
57,242 - Ac3H11_3840 0.67 +0.1
57,394 + Ac3H11_3840 0.85 -0.0
57,395 - Ac3H11_3840 0.85 +0.5
57,550 + +0.1
57,886 - Ac3H11_3841 0.41 +0.5
57,886 - Ac3H11_3841 0.41 +0.4
58,296 - +1.1
58,315 + -2.9
58,316 - +1.7
58,451 + -0.9
58,451 + -0.2
58,451 + +0.3
58,451 + +1.1
58,452 - +1.2
58,452 - +0.3
58,465 + -0.2
58,465 + -1.9
58,465 + +0.6
58,465 + +0.3
58,465 + +0.3
58,466 - +0.8
58,466 - +1.6
58,466 - -1.4
58,502 + +0.1
58,502 + -0.0
58,502 + -0.3
58,503 - -0.6
58,503 - +0.0
58,649 + +0.3
58,649 + +0.4
58,650 - +0.0
58,650 - -0.3
58,650 - +1.4
58,650 - +1.6
58,728 - -0.7
58,728 - +1.2
58,781 + -0.3
58,782 - -1.9
58,782 - +0.8
58,782 - -0.7
58,782 - +0.9
58,814 + -0.7
58,814 + +0.3
58,815 - +0.5
58,815 - -2.3
58,815 - -0.0
58,815 - +0.1
58,853 + Ac3H11_3842 0.11 +0.3
58,854 - Ac3H11_3842 0.11 -0.5
59,034 + Ac3H11_3842 0.16 -1.3
59,035 - Ac3H11_3842 0.16 -0.9
59,035 - Ac3H11_3842 0.16 +0.5
59,035 - Ac3H11_3842 0.16 -2.6
59,168 + Ac3H11_3842 0.20 +0.3
59,168 + Ac3H11_3842 0.20 -1.7
59,168 + Ac3H11_3842 0.20 +0.1
59,168 + Ac3H11_3842 0.20 -0.5
59,169 - Ac3H11_3842 0.20 +1.0
59,169 - Ac3H11_3842 0.20 -0.4
59,169 - Ac3H11_3842 0.20 -0.1

Or see this region's nucleotide sequence