Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1710

Experiment: Phosphomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1708 and Ac3H11_1709 are separated by 196 nucleotidesAc3H11_1709 and Ac3H11_1710 are separated by 24 nucleotidesAc3H11_1710 and Ac3H11_1711 are separated by 46 nucleotides Ac3H11_1708 - FIG00932121: hypothetical protein, at 310,311 to 310,616 _1708 Ac3H11_1709 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 310,813 to 311,400 _1709 Ac3H11_1710 - Virulence factor mviM, at 311,425 to 312,129 _1710 Ac3H11_1711 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 312,176 to 313,357 _1711 Position (kb) 311 312 313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 310.434 kb on + strand, within Ac3H11_1708at 310.434 kb on + strand, within Ac3H11_1708at 310.434 kb on + strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.435 kb on - strand, within Ac3H11_1708at 310.488 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.500 kb on + strand, within Ac3H11_1708at 310.501 kb on - strand, within Ac3H11_1708at 310.501 kb on - strand, within Ac3H11_1708at 310.815 kb on - strandat 310.857 kb on - strandat 311.087 kb on + strand, within Ac3H11_1709at 311.400 kb on + strandat 311.400 kb on + strandat 311.400 kb on + strandat 311.400 kb on + strandat 311.400 kb on + strandat 311.401 kb on - strandat 311.474 kb on + strandat 311.475 kb on - strandat 311.518 kb on + strand, within Ac3H11_1710at 311.519 kb on - strand, within Ac3H11_1710at 312.127 kb on + strandat 312.128 kb on - strandat 312.145 kb on + strandat 312.145 kb on + strandat 312.146 kb on - strandat 312.557 kb on + strand, within Ac3H11_1711at 312.557 kb on + strand, within Ac3H11_1711at 312.557 kb on + strand, within Ac3H11_1711at 312.558 kb on - strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.626 kb on + strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.627 kb on - strand, within Ac3H11_1711at 312.881 kb on + strand, within Ac3H11_1711at 312.881 kb on + strand, within Ac3H11_1711at 312.882 kb on - strand, within Ac3H11_1711

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml
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310,434 + Ac3H11_1708 0.40 +0.5
310,434 + Ac3H11_1708 0.40 -0.8
310,434 + Ac3H11_1708 0.40 +0.6
310,435 - Ac3H11_1708 0.41 +1.7
310,435 - Ac3H11_1708 0.41 -0.4
310,435 - Ac3H11_1708 0.41 +0.4
310,435 - Ac3H11_1708 0.41 -0.6
310,488 + Ac3H11_1708 0.58 -2.0
310,500 + Ac3H11_1708 0.62 +1.3
310,500 + Ac3H11_1708 0.62 -0.7
310,500 + Ac3H11_1708 0.62 -0.9
310,500 + Ac3H11_1708 0.62 -3.8
310,500 + Ac3H11_1708 0.62 -1.3
310,501 - Ac3H11_1708 0.62 -0.3
310,501 - Ac3H11_1708 0.62 +0.2
310,815 - -0.0
310,857 - -0.5
311,087 + Ac3H11_1709 0.47 -1.4
311,400 + -0.3
311,400 + -1.8
311,400 + +0.3
311,400 + -0.9
311,400 + +1.3
311,401 - -0.2
311,474 + -1.9
311,475 - -0.9
311,518 + Ac3H11_1710 0.13 +1.0
311,519 - Ac3H11_1710 0.13 -0.6
312,127 + +1.2
312,128 - -0.7
312,145 + +0.5
312,145 + +0.2
312,146 - +1.5
312,557 + Ac3H11_1711 0.32 -1.7
312,557 + Ac3H11_1711 0.32 +1.0
312,557 + Ac3H11_1711 0.32 -1.3
312,558 - Ac3H11_1711 0.32 +2.2
312,626 + Ac3H11_1711 0.38 +1.2
312,626 + Ac3H11_1711 0.38 -0.4
312,626 + Ac3H11_1711 0.38 +0.2
312,626 + Ac3H11_1711 0.38 +0.9
312,626 + Ac3H11_1711 0.38 +1.0
312,626 + Ac3H11_1711 0.38 +0.2
312,626 + Ac3H11_1711 0.38 +0.4
312,626 + Ac3H11_1711 0.38 +1.1
312,626 + Ac3H11_1711 0.38 -0.6
312,626 + Ac3H11_1711 0.38 +0.2
312,626 + Ac3H11_1711 0.38 -3.4
312,626 + Ac3H11_1711 0.38 -1.7
312,626 + Ac3H11_1711 0.38 +0.4
312,626 + Ac3H11_1711 0.38 +0.4
312,626 + Ac3H11_1711 0.38 +1.3
312,626 + Ac3H11_1711 0.38 +0.0
312,626 + Ac3H11_1711 0.38 +0.1
312,626 + Ac3H11_1711 0.38 -0.7
312,627 - Ac3H11_1711 0.38 -2.8
312,627 - Ac3H11_1711 0.38 -0.5
312,627 - Ac3H11_1711 0.38 -1.9
312,627 - Ac3H11_1711 0.38 +1.1
312,627 - Ac3H11_1711 0.38 -0.4
312,627 - Ac3H11_1711 0.38 +1.5
312,627 - Ac3H11_1711 0.38 -1.7
312,627 - Ac3H11_1711 0.38 +1.1
312,627 - Ac3H11_1711 0.38 -0.4
312,627 - Ac3H11_1711 0.38 -0.3
312,627 - Ac3H11_1711 0.38 +1.6
312,627 - Ac3H11_1711 0.38 +0.3
312,627 - Ac3H11_1711 0.38 +0.1
312,881 + Ac3H11_1711 0.60 +1.0
312,881 + Ac3H11_1711 0.60 -0.7
312,882 - Ac3H11_1711 0.60 -2.4

Or see this region's nucleotide sequence