Experiment: Phosphomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1159 and Ac3H11_1160 overlap by 4 nucleotides Ac3H11_1160 and Ac3H11_1161 are separated by 93 nucleotides Ac3H11_1161 and Ac3H11_1162 overlap by 48 nucleotides
Ac3H11_1159 - Sensory histidine kinase QseC, at 111,548 to 112,969
_1159
Ac3H11_1160 - probable two-component system response regulator, at 112,966 to 113,631
_1160
Ac3H11_1161 - hypothetical protein, at 113,725 to 113,877
_1161
Ac3H11_1162 - putative peptidase, at 113,830 to 115,740
_1162
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.400 kb on + strand, within Ac3H11_1159 at 112.401 kb on - strand, within Ac3H11_1159 at 112.401 kb on - strand, within Ac3H11_1159 at 112.425 kb on + strand, within Ac3H11_1159 at 112.449 kb on + strand, within Ac3H11_1159 at 112.449 kb on + strand, within Ac3H11_1159 at 112.521 kb on + strand, within Ac3H11_1159 at 112.521 kb on + strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.522 kb on - strand, within Ac3H11_1159 at 112.628 kb on - strand, within Ac3H11_1159 at 112.830 kb on + strand at 112.830 kb on + strand at 112.830 kb on + strand at 112.831 kb on - strand at 112.845 kb on + strand at 112.982 kb on + strand at 114.258 kb on + strand, within Ac3H11_1162 at 114.277 kb on + strand, within Ac3H11_1162 at 114.477 kb on + strand, within Ac3H11_1162 at 114.477 kb on + strand, within Ac3H11_1162 at 114.478 kb on - strand, within Ac3H11_1162
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.06 mg/ml remove 112,400 + Ac3H11_1159 0.60 -1.4 112,400 + Ac3H11_1159 0.60 -0.2 112,400 + Ac3H11_1159 0.60 +1.5 112,400 + Ac3H11_1159 0.60 +1.5 112,400 + Ac3H11_1159 0.60 -1.0 112,401 - Ac3H11_1159 0.60 +0.3 112,401 - Ac3H11_1159 0.60 +0.6 112,425 + Ac3H11_1159 0.62 -0.4 112,449 + Ac3H11_1159 0.63 -0.3 112,449 + Ac3H11_1159 0.63 +0.5 112,521 + Ac3H11_1159 0.68 +0.4 112,521 + Ac3H11_1159 0.68 -3.5 112,522 - Ac3H11_1159 0.68 -1.9 112,522 - Ac3H11_1159 0.68 +0.3 112,522 - Ac3H11_1159 0.68 +0.8 112,628 - Ac3H11_1159 0.76 +0.5 112,830 + -3.6 112,830 + -2.1 112,830 + -1.5 112,831 - +0.5 112,845 + -0.8 112,982 + +0.4 114,258 + Ac3H11_1162 0.22 +1.8 114,277 + Ac3H11_1162 0.23 +0.0 114,477 + Ac3H11_1162 0.34 +0.5 114,477 + Ac3H11_1162 0.34 -3.7 114,478 - Ac3H11_1162 0.34 +0.4
Or see this region's nucleotide sequence