Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29005

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29000 and AO353_29005 are separated by 139 nucleotidesAO353_29005 and AO353_29010 are separated by 262 nucleotidesAO353_29010 and AO353_29015 are separated by 308 nucleotides AO353_29000: AO353_29000 - pyridoxal-5'-phosphate-dependent protein subunit beta, at 6,303,813 to 6,304,724 _29000 AO353_29005: AO353_29005 - hypothetical protein, at 6,304,864 to 6,305,205 _29005 AO353_29010: AO353_29010 - hypothetical protein, at 6,305,468 to 6,305,746 _29010 AO353_29015: AO353_29015 - ABC transporter substrate-binding protein, at 6,306,055 to 6,306,843 _29015 Position (kb) 6304 6305 6306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6303.876 kb on + strandat 6303.877 kb on - strandat 6303.916 kb on + strand, within AO353_29000at 6303.917 kb on - strand, within AO353_29000at 6303.977 kb on - strand, within AO353_29000at 6304.351 kb on + strand, within AO353_29000at 6304.351 kb on + strand, within AO353_29000at 6304.351 kb on + strand, within AO353_29000at 6304.352 kb on - strand, within AO353_29000at 6304.352 kb on - strand, within AO353_29000at 6304.699 kb on - strandat 6304.715 kb on + strandat 6304.756 kb on + strandat 6304.756 kb on + strandat 6304.756 kb on + strandat 6304.756 kb on + strandat 6304.756 kb on + strandat 6304.757 kb on - strandat 6304.757 kb on - strandat 6304.757 kb on - strandat 6304.757 kb on - strandat 6304.815 kb on + strandat 6304.815 kb on + strandat 6304.815 kb on + strandat 6304.816 kb on - strandat 6304.816 kb on - strandat 6304.816 kb on - strandat 6304.816 kb on - strandat 6304.862 kb on + strandat 6304.863 kb on - strandat 6304.863 kb on - strandat 6304.931 kb on + strand, within AO353_29005at 6304.931 kb on + strand, within AO353_29005at 6304.931 kb on + strand, within AO353_29005at 6304.931 kb on + strand, within AO353_29005at 6304.932 kb on - strand, within AO353_29005at 6304.932 kb on - strand, within AO353_29005at 6305.178 kb on + strandat 6305.178 kb on + strandat 6305.179 kb on - strandat 6305.179 kb on - strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.243 kb on + strandat 6305.244 kb on - strandat 6305.244 kb on - strandat 6305.244 kb on - strandat 6305.314 kb on - strandat 6305.314 kb on - strandat 6305.335 kb on + strandat 6305.335 kb on + strandat 6305.335 kb on + strandat 6305.336 kb on - strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.415 kb on + strandat 6305.416 kb on - strandat 6305.416 kb on - strandat 6305.474 kb on + strandat 6305.474 kb on + strandat 6305.474 kb on + strandat 6305.474 kb on + strandat 6305.474 kb on + strandat 6305.474 kb on + strandat 6305.475 kb on - strandat 6305.475 kb on - strandat 6305.475 kb on - strandat 6305.509 kb on + strand, within AO353_29010at 6305.509 kb on + strand, within AO353_29010at 6305.509 kb on + strand, within AO353_29010at 6305.509 kb on + strand, within AO353_29010at 6305.509 kb on + strand, within AO353_29010at 6305.510 kb on - strand, within AO353_29010at 6305.510 kb on - strand, within AO353_29010at 6305.510 kb on - strand, within AO353_29010at 6305.510 kb on - strand, within AO353_29010at 6305.513 kb on - strand, within AO353_29010at 6305.589 kb on + strand, within AO353_29010at 6305.590 kb on - strand, within AO353_29010at 6305.640 kb on + strand, within AO353_29010at 6305.744 kb on + strandat 6305.745 kb on - strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.805 kb on + strandat 6305.806 kb on - strandat 6305.883 kb on + strandat 6305.915 kb on + strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.916 kb on - strandat 6305.976 kb on + strandat 6305.976 kb on + strandat 6305.976 kb on + strandat 6305.976 kb on + strandat 6305.976 kb on + strandat 6306.016 kb on - strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.033 kb on + strandat 6306.034 kb on - strandat 6306.034 kb on - strandat 6306.034 kb on - strandat 6306.034 kb on - strandat 6306.042 kb on + strandat 6306.056 kb on + strandat 6306.057 kb on - strandat 6306.057 kb on - strandat 6306.057 kb on - strandat 6306.068 kb on + strandat 6306.068 kb on + strandat 6306.068 kb on + strandat 6306.068 kb on + strandat 6306.068 kb on + strandat 6306.069 kb on - strandat 6306.069 kb on - strandat 6306.069 kb on - strandat 6306.069 kb on - strandat 6306.069 kb on - strandat 6306.086 kb on + strandat 6306.086 kb on + strandat 6306.087 kb on - strandat 6306.107 kb on + strandat 6306.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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6,303,876 + +0.0
6,303,877 - +1.4
6,303,916 + AO353_29000 0.11 -2.1
6,303,917 - AO353_29000 0.11 +0.9
6,303,977 - AO353_29000 0.18 -0.9
6,304,351 + AO353_29000 0.59 +1.0
6,304,351 + AO353_29000 0.59 -0.7
6,304,351 + AO353_29000 0.59 +0.0
6,304,352 - AO353_29000 0.59 -0.3
6,304,352 - AO353_29000 0.59 -0.7
6,304,699 - +0.4
6,304,715 + +0.0
6,304,756 + +0.5
6,304,756 + +0.5
6,304,756 + -0.8
6,304,756 + -1.0
6,304,756 + -0.5
6,304,757 - -0.0
6,304,757 - -0.7
6,304,757 - +0.1
6,304,757 - -1.5
6,304,815 + -0.1
6,304,815 + +0.6
6,304,815 + -0.4
6,304,816 - -1.3
6,304,816 - +0.5
6,304,816 - +0.4
6,304,816 - +1.3
6,304,862 + +0.5
6,304,863 - -0.6
6,304,863 - +1.4
6,304,931 + AO353_29005 0.20 -0.5
6,304,931 + AO353_29005 0.20 -1.8
6,304,931 + AO353_29005 0.20 -0.3
6,304,931 + AO353_29005 0.20 -1.9
6,304,932 - AO353_29005 0.20 -1.3
6,304,932 - AO353_29005 0.20 +1.1
6,305,178 + +0.3
6,305,178 + -0.6
6,305,179 - +0.6
6,305,179 - -1.5
6,305,243 + -0.9
6,305,243 + -0.6
6,305,243 + -0.1
6,305,243 + -1.6
6,305,243 + -1.6
6,305,243 + +0.5
6,305,243 + -1.0
6,305,243 + +0.3
6,305,243 + -1.1
6,305,244 - -0.6
6,305,244 - -0.3
6,305,244 - +0.3
6,305,314 - +0.9
6,305,314 - -1.1
6,305,335 + -1.6
6,305,335 + -0.1
6,305,335 + -0.9
6,305,336 - -0.2
6,305,415 + -0.9
6,305,415 + +1.3
6,305,415 + -1.9
6,305,415 + -0.3
6,305,415 + +0.3
6,305,415 + +1.9
6,305,415 + +1.1
6,305,415 + +0.5
6,305,416 - -1.1
6,305,416 - -0.6
6,305,474 + +0.6
6,305,474 + -0.1
6,305,474 + +0.7
6,305,474 + +0.5
6,305,474 + +0.5
6,305,474 + -0.1
6,305,475 - +0.9
6,305,475 - +0.4
6,305,475 - +0.7
6,305,509 + AO353_29010 0.15 -0.5
6,305,509 + AO353_29010 0.15 -0.2
6,305,509 + AO353_29010 0.15 -0.5
6,305,509 + AO353_29010 0.15 -0.1
6,305,509 + AO353_29010 0.15 -0.8
6,305,510 - AO353_29010 0.15 -0.1
6,305,510 - AO353_29010 0.15 -0.1
6,305,510 - AO353_29010 0.15 -0.2
6,305,510 - AO353_29010 0.15 +0.3
6,305,513 - AO353_29010 0.16 +0.5
6,305,589 + AO353_29010 0.43 -1.5
6,305,590 - AO353_29010 0.44 +0.4
6,305,640 + AO353_29010 0.62 -0.7
6,305,744 + -1.0
6,305,745 - +0.1
6,305,805 + -1.7
6,305,805 + -1.6
6,305,805 + +0.5
6,305,805 + -0.1
6,305,805 + -1.2
6,305,805 + -1.0
6,305,805 + +0.6
6,305,806 - +1.6
6,305,883 + +2.9
6,305,915 + +0.9
6,305,916 - +0.6
6,305,916 - -0.7
6,305,916 - +0.6
6,305,916 - +0.4
6,305,916 - +1.3
6,305,916 - -1.3
6,305,916 - +0.2
6,305,976 + -1.2
6,305,976 + -1.7
6,305,976 + -2.5
6,305,976 + -0.5
6,305,976 + +1.5
6,306,016 - +0.3
6,306,033 + -0.1
6,306,033 + +1.0
6,306,033 + +0.4
6,306,033 + -1.5
6,306,033 + +0.6
6,306,033 + -1.1
6,306,033 + -0.1
6,306,033 + +0.4
6,306,033 + -1.4
6,306,034 - -1.4
6,306,034 - -0.1
6,306,034 - +0.9
6,306,034 - -1.5
6,306,042 + -0.6
6,306,056 + +2.4
6,306,057 - -2.7
6,306,057 - -0.3
6,306,057 - -0.1
6,306,068 + +0.1
6,306,068 + -0.2
6,306,068 + +2.3
6,306,068 + -0.4
6,306,068 + +0.6
6,306,069 - +0.5
6,306,069 - -0.2
6,306,069 - -0.8
6,306,069 - +0.3
6,306,069 - -1.1
6,306,086 + -1.7
6,306,086 + -0.6
6,306,087 - -1.2
6,306,107 + -0.1
6,306,108 - +0.1

Or see this region's nucleotide sequence