Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27630

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27625 and AO353_27630 are separated by 0 nucleotidesAO353_27630 and AO353_27635 are separated by 16 nucleotidesAO353_27635 and AO353_27640 overlap by 4 nucleotides AO353_27625: AO353_27625 - sirohydrochlorin ferrochelatase, at 6,019,586 to 6,020,980 _27625 AO353_27630: AO353_27630 - serine--tRNA ligase, at 6,020,981 to 6,022,261 _27630 AO353_27635: AO353_27635 - camphor resistance protein CrcB, at 6,022,278 to 6,022,652 _27635 AO353_27640: AO353_27640 - recombination factor protein RarA, at 6,022,649 to 6,023,974 _27640 Position (kb) 6020 6021 6022 6023Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6020.530 kb on - strand, within AO353_27625at 6022.330 kb on - strand, within AO353_27635at 6022.363 kb on - strand, within AO353_27635at 6022.363 kb on - strand, within AO353_27635at 6022.485 kb on - strand, within AO353_27635at 6022.485 kb on - strand, within AO353_27635at 6022.485 kb on - strand, within AO353_27635at 6022.496 kb on - strand, within AO353_27635at 6022.496 kb on - strand, within AO353_27635at 6022.496 kb on - strand, within AO353_27635at 6022.496 kb on - strand, within AO353_27635at 6022.527 kb on - strand, within AO353_27635at 6022.527 kb on - strand, within AO353_27635at 6022.527 kb on - strand, within AO353_27635at 6022.527 kb on - strand, within AO353_27635at 6022.550 kb on - strand, within AO353_27635at 6022.550 kb on - strand, within AO353_27635at 6022.550 kb on - strand, within AO353_27635at 6022.749 kb on + strandat 6022.749 kb on + strandat 6022.749 kb on + strandat 6022.750 kb on - strandat 6022.750 kb on - strandat 6022.800 kb on + strand, within AO353_27640at 6022.830 kb on + strand, within AO353_27640at 6022.831 kb on - strand, within AO353_27640at 6022.946 kb on - strand, within AO353_27640at 6022.947 kb on + strand, within AO353_27640at 6022.947 kb on + strand, within AO353_27640at 6022.948 kb on - strand, within AO353_27640at 6022.948 kb on - strand, within AO353_27640at 6022.980 kb on + strand, within AO353_27640at 6022.980 kb on + strand, within AO353_27640at 6022.980 kb on + strand, within AO353_27640at 6022.980 kb on + strand, within AO353_27640at 6022.980 kb on + strand, within AO353_27640at 6022.981 kb on - strand, within AO353_27640at 6022.981 kb on - strand, within AO353_27640at 6022.981 kb on - strand, within AO353_27640at 6022.984 kb on + strand, within AO353_27640at 6022.984 kb on + strand, within AO353_27640at 6022.984 kb on + strand, within AO353_27640at 6022.984 kb on + strand, within AO353_27640at 6022.984 kb on + strand, within AO353_27640at 6022.985 kb on - strand, within AO353_27640at 6022.985 kb on - strand, within AO353_27640at 6022.985 kb on - strand, within AO353_27640at 6022.985 kb on - strand, within AO353_27640at 6022.985 kb on - strand, within AO353_27640at 6023.127 kb on + strand, within AO353_27640at 6023.127 kb on + strand, within AO353_27640at 6023.169 kb on + strand, within AO353_27640at 6023.169 kb on + strand, within AO353_27640at 6023.170 kb on - strand, within AO353_27640

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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6,020,530 - AO353_27625 0.68 +0.2
6,022,330 - AO353_27635 0.14 -0.8
6,022,363 - AO353_27635 0.23 +1.1
6,022,363 - AO353_27635 0.23 +0.1
6,022,485 - AO353_27635 0.55 -0.2
6,022,485 - AO353_27635 0.55 +0.2
6,022,485 - AO353_27635 0.55 -1.2
6,022,496 - AO353_27635 0.58 +2.8
6,022,496 - AO353_27635 0.58 +2.4
6,022,496 - AO353_27635 0.58 +0.6
6,022,496 - AO353_27635 0.58 +0.6
6,022,527 - AO353_27635 0.66 +0.2
6,022,527 - AO353_27635 0.66 -0.5
6,022,527 - AO353_27635 0.66 -1.0
6,022,527 - AO353_27635 0.66 -0.4
6,022,550 - AO353_27635 0.73 +0.8
6,022,550 - AO353_27635 0.73 -0.9
6,022,550 - AO353_27635 0.73 -0.4
6,022,749 + -0.2
6,022,749 + -2.3
6,022,749 + -0.5
6,022,750 - -0.8
6,022,750 - -1.7
6,022,800 + AO353_27640 0.11 -0.9
6,022,830 + AO353_27640 0.14 -0.3
6,022,831 - AO353_27640 0.14 +0.8
6,022,946 - AO353_27640 0.22 +0.9
6,022,947 + AO353_27640 0.22 -1.4
6,022,947 + AO353_27640 0.22 -0.1
6,022,948 - AO353_27640 0.23 -0.4
6,022,948 - AO353_27640 0.23 -0.7
6,022,980 + AO353_27640 0.25 +0.5
6,022,980 + AO353_27640 0.25 -0.2
6,022,980 + AO353_27640 0.25 +1.0
6,022,980 + AO353_27640 0.25 -1.5
6,022,980 + AO353_27640 0.25 +0.2
6,022,981 - AO353_27640 0.25 -1.5
6,022,981 - AO353_27640 0.25 -0.7
6,022,981 - AO353_27640 0.25 +0.5
6,022,984 + AO353_27640 0.25 +1.0
6,022,984 + AO353_27640 0.25 -0.7
6,022,984 + AO353_27640 0.25 -0.2
6,022,984 + AO353_27640 0.25 -1.2
6,022,984 + AO353_27640 0.25 +0.4
6,022,985 - AO353_27640 0.25 +2.1
6,022,985 - AO353_27640 0.25 +0.8
6,022,985 - AO353_27640 0.25 -1.9
6,022,985 - AO353_27640 0.25 +0.8
6,022,985 - AO353_27640 0.25 -1.1
6,023,127 + AO353_27640 0.36 -1.2
6,023,127 + AO353_27640 0.36 +1.6
6,023,169 + AO353_27640 0.39 +0.7
6,023,169 + AO353_27640 0.39 +2.1
6,023,170 - AO353_27640 0.39 +0.6

Or see this region's nucleotide sequence