Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27235

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27230 and AO353_27235 are separated by 10 nucleotides AO353_27230: AO353_27230 - pyocin, at 5,955,248 to 5,956,453 _27230 AO353_27235: AO353_27235 - hypothetical protein, at 5,956,464 to 5,956,820 _27235 Position (kb) 5956 5957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5955.562 kb on + strand, within AO353_27230at 5955.707 kb on + strand, within AO353_27230at 5955.707 kb on + strand, within AO353_27230at 5955.707 kb on + strand, within AO353_27230at 5955.707 kb on + strand, within AO353_27230at 5955.708 kb on - strand, within AO353_27230at 5955.708 kb on - strand, within AO353_27230at 5955.722 kb on + strand, within AO353_27230at 5955.722 kb on + strand, within AO353_27230at 5955.722 kb on + strand, within AO353_27230at 5955.723 kb on - strand, within AO353_27230at 5955.806 kb on + strand, within AO353_27230at 5955.806 kb on + strand, within AO353_27230at 5955.807 kb on - strand, within AO353_27230at 5955.807 kb on - strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strandat 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.872 kb on + strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.873 kb on - strand, within AO353_27230at 5955.925 kb on + strand, within AO353_27230at 5955.926 kb on - strand, within AO353_27230at 5955.926 kb on - strand, within AO353_27230at 5955.989 kb on + strand, within AO353_27230at 5955.989 kb on + strand, within AO353_27230at 5955.990 kb on - strand, within AO353_27230at 5956.060 kb on + strand, within AO353_27230at 5956.060 kb on + strand, within AO353_27230at 5956.060 kb on + strand, within AO353_27230at 5956.061 kb on - strand, within AO353_27230at 5956.061 kb on - strand, within AO353_27230at 5956.061 kb on - strand, within AO353_27230at 5956.061 kb on - strand, within AO353_27230at 5956.095 kb on - strand, within AO353_27230at 5956.095 kb on - strand, within AO353_27230at 5956.095 kb on - strand, within AO353_27230at 5956.095 kb on - strand, within AO353_27230at 5956.095 kb on - strand, within AO353_27230at 5956.109 kb on - strand, within AO353_27230at 5956.109 kb on - strand, within AO353_27230at 5956.109 kb on - strand, within AO353_27230at 5956.169 kb on + strand, within AO353_27230at 5956.170 kb on - strand, within AO353_27230at 5956.174 kb on + strand, within AO353_27230at 5956.174 kb on + strand, within AO353_27230at 5956.175 kb on - strand, within AO353_27230at 5956.243 kb on + strand, within AO353_27230at 5956.244 kb on - strand, within AO353_27230at 5956.244 kb on - strand, within AO353_27230at 5956.361 kb on - strandat 5956.365 kb on + strandat 5956.366 kb on - strandat 5956.366 kb on - strandat 5956.366 kb on - strandat 5956.368 kb on + strandat 5956.368 kb on + strandat 5956.369 kb on - strandat 5956.444 kb on + strandat 5956.445 kb on - strandat 5956.474 kb on + strandat 5956.475 kb on - strandat 5956.475 kb on - strandat 5956.493 kb on + strandat 5956.496 kb on + strandat 5956.496 kb on + strandat 5956.497 kb on - strandat 5956.497 kb on - strandat 5956.497 kb on - strandat 5956.497 kb on - strandat 5956.528 kb on + strand, within AO353_27235at 5956.528 kb on + strand, within AO353_27235at 5956.528 kb on + strand, within AO353_27235at 5956.613 kb on + strand, within AO353_27235at 5956.614 kb on - strand, within AO353_27235at 5956.617 kb on + strand, within AO353_27235at 5956.617 kb on + strand, within AO353_27235at 5956.617 kb on + strand, within AO353_27235at 5956.617 kb on + strand, within AO353_27235at 5956.617 kb on + strand, within AO353_27235at 5956.618 kb on - strand, within AO353_27235at 5956.618 kb on - strand, within AO353_27235at 5956.618 kb on - strand, within AO353_27235at 5956.618 kb on - strand, within AO353_27235at 5956.704 kb on + strand, within AO353_27235at 5956.704 kb on + strand, within AO353_27235at 5956.705 kb on - strand, within AO353_27235at 5956.705 kb on - strand, within AO353_27235at 5956.711 kb on + strand, within AO353_27235at 5956.712 kb on - strand, within AO353_27235at 5956.712 kb on - strand, within AO353_27235at 5956.790 kb on + strandat 5956.791 kb on - strandat 5956.791 kb on - strandat 5956.880 kb on + strandat 5956.881 kb on - strandat 5956.881 kb on - strandat 5956.881 kb on - strandat 5956.881 kb on - strandat 5956.881 kb on - strandat 5956.881 kb on - strandat 5956.920 kb on + strandat 5956.920 kb on + strandat 5956.920 kb on + strandat 5956.921 kb on - strandat 5956.921 kb on - strandat 5956.921 kb on - strandat 5956.921 kb on - strandat 5956.921 kb on - strandat 5956.923 kb on + strandat 5956.923 kb on + strandat 5956.924 kb on - strandat 5956.924 kb on - strandat 5956.924 kb on - strandat 5956.924 kb on - strandat 5956.988 kb on + strandat 5957.077 kb on - strandat 5957.077 kb on - strandat 5957.120 kb on - strandat 5957.198 kb on - strandat 5957.198 kb on - strandat 5957.198 kb on - strandat 5957.198 kb on - strandat 5957.198 kb on - strandat 5957.246 kb on - strandat 5957.246 kb on - strandat 5957.246 kb on - strandat 5957.246 kb on - strandat 5957.298 kb on - strandat 5957.405 kb on - strandat 5957.479 kb on - strandat 5957.584 kb on - strandat 5957.595 kb on - strandat 5957.595 kb on - strandat 5957.600 kb on + strandat 5957.639 kb on + strandat 5957.639 kb on + strandat 5957.639 kb on + strandat 5957.640 kb on - strandat 5957.641 kb on + strandat 5957.641 kb on + strandat 5957.642 kb on - strandat 5957.651 kb on - strandat 5957.651 kb on - strandat 5957.670 kb on + strandat 5957.670 kb on + strandat 5957.671 kb on - strandat 5957.706 kb on + strandat 5957.706 kb on + strandat 5957.706 kb on + strandat 5957.707 kb on - strandat 5957.798 kb on - strandat 5957.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,955,562 + AO353_27230 0.26 -2.6
5,955,707 + AO353_27230 0.38 -0.2
5,955,707 + AO353_27230 0.38 -0.2
5,955,707 + AO353_27230 0.38 -1.1
5,955,707 + AO353_27230 0.38 -1.5
5,955,708 - AO353_27230 0.38 -2.0
5,955,708 - AO353_27230 0.38 +2.2
5,955,722 + AO353_27230 0.39 +0.8
5,955,722 + AO353_27230 0.39 +0.8
5,955,722 + AO353_27230 0.39 -1.0
5,955,723 - AO353_27230 0.39 -1.4
5,955,806 + AO353_27230 0.46 -0.8
5,955,806 + AO353_27230 0.46 -2.2
5,955,807 - AO353_27230 0.46 +0.8
5,955,807 - AO353_27230 0.46 -0.5
5,955,872 + AO353_27230 0.52 -0.8
5,955,872 + AO353_27230 0.52 -0.7
5,955,872 + AO353_27230 0.52 +0.8
5,955,872 + AO353_27230 0.52 +0.7
5,955,872 + AO353_27230 0.52 +1.2
5,955,872 + AO353_27230 0.52 -1.4
5,955,872 + -0.8
5,955,872 + AO353_27230 0.52 -1.2
5,955,872 + AO353_27230 0.52 -1.7
5,955,872 + AO353_27230 0.52 +0.9
5,955,872 + AO353_27230 0.52 -0.8
5,955,872 + AO353_27230 0.52 -0.4
5,955,872 + AO353_27230 0.52 -1.2
5,955,872 + AO353_27230 0.52 +0.0
5,955,872 + AO353_27230 0.52 -1.5
5,955,872 + AO353_27230 0.52 +0.6
5,955,872 + AO353_27230 0.52 -0.8
5,955,872 + AO353_27230 0.52 +0.0
5,955,872 + AO353_27230 0.52 +0.5
5,955,872 + AO353_27230 0.52 -0.8
5,955,872 + AO353_27230 0.52 -0.8
5,955,872 + AO353_27230 0.52 +1.0
5,955,872 + AO353_27230 0.52 -0.6
5,955,872 + AO353_27230 0.52 +0.8
5,955,872 + AO353_27230 0.52 -1.8
5,955,872 + AO353_27230 0.52 -0.5
5,955,873 - AO353_27230 0.52 -2.3
5,955,873 - AO353_27230 0.52 -0.6
5,955,873 - AO353_27230 0.52 -0.1
5,955,873 - AO353_27230 0.52 -0.4
5,955,873 - AO353_27230 0.52 -0.8
5,955,873 - AO353_27230 0.52 +0.2
5,955,873 - AO353_27230 0.52 -1.2
5,955,873 - AO353_27230 0.52 -1.9
5,955,873 - AO353_27230 0.52 -0.8
5,955,873 - AO353_27230 0.52 +1.0
5,955,873 - AO353_27230 0.52 -0.2
5,955,873 - AO353_27230 0.52 -1.2
5,955,873 - AO353_27230 0.52 -0.6
5,955,873 - AO353_27230 0.52 -0.2
5,955,873 - AO353_27230 0.52 +0.2
5,955,925 + AO353_27230 0.56 +0.8
5,955,926 - AO353_27230 0.56 +0.4
5,955,926 - AO353_27230 0.56 +1.8
5,955,989 + AO353_27230 0.61 +0.0
5,955,989 + AO353_27230 0.61 -0.7
5,955,990 - AO353_27230 0.62 -1.6
5,956,060 + AO353_27230 0.67 +0.2
5,956,060 + AO353_27230 0.67 -1.2
5,956,060 + AO353_27230 0.67 +0.3
5,956,061 - AO353_27230 0.67 -1.0
5,956,061 - AO353_27230 0.67 -0.2
5,956,061 - AO353_27230 0.67 +1.3
5,956,061 - AO353_27230 0.67 -0.6
5,956,095 - AO353_27230 0.70 -0.2
5,956,095 - AO353_27230 0.70 -0.1
5,956,095 - AO353_27230 0.70 -2.1
5,956,095 - AO353_27230 0.70 +1.8
5,956,095 - AO353_27230 0.70 +0.3
5,956,109 - AO353_27230 0.71 -1.4
5,956,109 - AO353_27230 0.71 +0.6
5,956,109 - AO353_27230 0.71 -0.0
5,956,169 + AO353_27230 0.76 +0.8
5,956,170 - AO353_27230 0.76 -0.2
5,956,174 + AO353_27230 0.77 -1.8
5,956,174 + AO353_27230 0.77 -0.9
5,956,175 - AO353_27230 0.77 -1.2
5,956,243 + AO353_27230 0.83 +1.3
5,956,244 - AO353_27230 0.83 +0.6
5,956,244 - AO353_27230 0.83 -1.7
5,956,361 - -0.8
5,956,365 + +0.0
5,956,366 - -1.6
5,956,366 - +1.2
5,956,366 - +0.6
5,956,368 + +1.2
5,956,368 + -1.0
5,956,369 - -0.2
5,956,444 + -0.5
5,956,445 - -0.2
5,956,474 + -0.2
5,956,475 - -0.8
5,956,475 - -2.3
5,956,493 + -1.0
5,956,496 + +0.2
5,956,496 + +0.8
5,956,497 - -1.0
5,956,497 - -0.8
5,956,497 - +1.1
5,956,497 - -0.2
5,956,528 + AO353_27235 0.18 +0.3
5,956,528 + AO353_27235 0.18 -1.4
5,956,528 + AO353_27235 0.18 +1.0
5,956,613 + AO353_27235 0.42 +0.4
5,956,614 - AO353_27235 0.42 +0.8
5,956,617 + AO353_27235 0.43 -0.1
5,956,617 + AO353_27235 0.43 +2.6
5,956,617 + AO353_27235 0.43 -1.0
5,956,617 + AO353_27235 0.43 +0.3
5,956,617 + AO353_27235 0.43 -0.8
5,956,618 - AO353_27235 0.43 -3.0
5,956,618 - AO353_27235 0.43 -1.3
5,956,618 - AO353_27235 0.43 +5.2
5,956,618 - AO353_27235 0.43 +0.3
5,956,704 + AO353_27235 0.67 +2.6
5,956,704 + AO353_27235 0.67 +0.2
5,956,705 - AO353_27235 0.68 -0.2
5,956,705 - AO353_27235 0.68 +0.6
5,956,711 + AO353_27235 0.69 -0.2
5,956,712 - AO353_27235 0.69 +0.2
5,956,712 - AO353_27235 0.69 +0.3
5,956,790 + -0.0
5,956,791 - +1.1
5,956,791 - +0.4
5,956,880 + -0.7
5,956,881 - -1.4
5,956,881 - -1.2
5,956,881 - -0.7
5,956,881 - -1.6
5,956,881 - -2.7
5,956,881 - -0.8
5,956,920 + +0.8
5,956,920 + -0.1
5,956,920 + +0.4
5,956,921 - +0.3
5,956,921 - -0.8
5,956,921 - -0.4
5,956,921 - -1.7
5,956,921 - -1.4
5,956,923 + +0.8
5,956,923 + +0.8
5,956,924 - -1.7
5,956,924 - +0.1
5,956,924 - -0.7
5,956,924 - +2.1
5,956,988 + -0.6
5,957,077 - -1.0
5,957,077 - -1.3
5,957,120 - -1.5
5,957,198 - +0.4
5,957,198 - -1.2
5,957,198 - +0.4
5,957,198 - +0.4
5,957,198 - -0.8
5,957,246 - -0.5
5,957,246 - -0.6
5,957,246 - -0.4
5,957,246 - -0.4
5,957,298 - -0.6
5,957,405 - -0.8
5,957,479 - +0.3
5,957,584 - -1.9
5,957,595 - -0.6
5,957,595 - +2.3
5,957,600 + +0.5
5,957,639 + +0.5
5,957,639 + +1.3
5,957,639 + +0.6
5,957,640 - +0.2
5,957,641 + -0.9
5,957,641 + -0.2
5,957,642 - +1.0
5,957,651 - +0.4
5,957,651 - -0.5
5,957,670 + +0.9
5,957,670 + +0.4
5,957,671 - +1.8
5,957,706 + -0.2
5,957,706 + +2.8
5,957,706 + +0.2
5,957,707 - -1.5
5,957,798 - -0.0
5,957,803 - +1.3

Or see this region's nucleotide sequence