Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27060

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27045 and AO353_27050 are separated by 90 nucleotidesAO353_27050 and AO353_27055 are separated by 150 nucleotidesAO353_27055 and AO353_27060 are separated by 68 nucleotidesAO353_27060 and AO353_27065 are separated by 1 nucleotides AO353_27045: AO353_27045 - ABC transporter ATP-binding protein, at 5,925,930 to 5,927,582 _27045 AO353_27050: AO353_27050 - hypothetical protein, at 5,927,673 to 5,927,897 _27050 AO353_27055: AO353_27055 - hypothetical protein, at 5,928,048 to 5,928,278 _27055 AO353_27060: AO353_27060 - XshC-Cox1 family protein, at 5,928,347 to 5,929,318 _27060 AO353_27065: AO353_27065 - cytochrome C oxidase Cbb3, at 5,929,320 to 5,930,567 _27065 Position (kb) 5928 5929 5930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5927.356 kb on + strand, within AO353_27045at 5927.519 kb on + strandat 5927.519 kb on + strandat 5927.519 kb on + strandat 5927.519 kb on + strandat 5927.519 kb on + strandat 5927.520 kb on - strandat 5927.520 kb on - strandat 5927.520 kb on - strandat 5927.520 kb on - strandat 5927.633 kb on + strandat 5927.633 kb on + strandat 5927.633 kb on + strandat 5927.633 kb on + strandat 5927.633 kb on + strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.634 kb on - strandat 5927.635 kb on + strandat 5927.635 kb on + strandat 5927.635 kb on + strandat 5927.636 kb on - strandat 5927.636 kb on - strandat 5927.636 kb on - strandat 5927.636 kb on - strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.646 kb on + strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.647 kb on - strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.683 kb on + strandat 5927.684 kb on - strandat 5927.684 kb on - strandat 5927.684 kb on - strandat 5927.684 kb on - strandat 5927.786 kb on + strand, within AO353_27050at 5927.807 kb on + strand, within AO353_27050at 5927.807 kb on + strand, within AO353_27050at 5927.807 kb on + strand, within AO353_27050at 5927.808 kb on - strand, within AO353_27050at 5927.808 kb on - strand, within AO353_27050at 5927.809 kb on + strand, within AO353_27050at 5927.809 kb on + strand, within AO353_27050at 5927.809 kb on + strand, within AO353_27050at 5927.809 kb on + strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strandat 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.810 kb on - strand, within AO353_27050at 5927.888 kb on + strandat 5927.889 kb on - strandat 5927.942 kb on + strandat 5927.942 kb on + strandat 5927.945 kb on - strandat 5928.071 kb on + strand, within AO353_27055at 5928.295 kb on - strandat 5928.365 kb on + strandat 5928.365 kb on + strandat 5928.365 kb on + strandat 5928.365 kb on + strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.366 kb on - strandat 5928.367 kb on + strandat 5928.368 kb on - strandat 5928.439 kb on + strandat 5928.440 kb on - strandat 5928.461 kb on - strand, within AO353_27060at 5928.493 kb on + strand, within AO353_27060at 5928.893 kb on + strand, within AO353_27060at 5929.016 kb on + strand, within AO353_27060at 5929.016 kb on + strand, within AO353_27060at 5929.016 kb on + strand, within AO353_27060at 5929.046 kb on + strand, within AO353_27060at 5929.046 kb on + strand, within AO353_27060at 5929.046 kb on + strand, within AO353_27060at 5929.227 kb on + strandat 5929.227 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.253 kb on + strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.254 kb on - strandat 5929.318 kb on + strandat 5929.318 kb on + strandat 5929.318 kb on + strandat 5929.319 kb on - strandat 5929.319 kb on - strandat 5929.418 kb on - strandat 5929.418 kb on - strandat 5929.418 kb on - strandat 5929.645 kb on + strand, within AO353_27065at 5929.646 kb on - strand, within AO353_27065at 5929.646 kb on - strand, within AO353_27065at 5929.788 kb on - strand, within AO353_27065at 5929.788 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.821 kb on - strand, within AO353_27065at 5929.918 kb on + strand, within AO353_27065at 5929.918 kb on + strand, within AO353_27065at 5929.919 kb on - strand, within AO353_27065at 5929.919 kb on - strand, within AO353_27065at 5930.011 kb on - strand, within AO353_27065at 5930.011 kb on - strand, within AO353_27065at 5930.023 kb on + strand, within AO353_27065at 5930.087 kb on - strand, within AO353_27065at 5930.087 kb on - strand, within AO353_27065at 5930.185 kb on + strand, within AO353_27065at 5930.228 kb on - strand, within AO353_27065at 5930.236 kb on + strand, within AO353_27065at 5930.314 kb on + strand, within AO353_27065at 5930.315 kb on - strand, within AO353_27065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,927,356 + AO353_27045 0.86 +0.3
5,927,519 + +0.4
5,927,519 + -0.6
5,927,519 + +0.2
5,927,519 + -1.4
5,927,519 + -1.1
5,927,520 - +0.2
5,927,520 - +0.2
5,927,520 - -0.4
5,927,520 - +0.6
5,927,633 + +0.2
5,927,633 + +0.8
5,927,633 + +0.5
5,927,633 + -0.0
5,927,633 + -1.9
5,927,634 - -3.1
5,927,634 - +1.0
5,927,634 - -0.7
5,927,634 - +0.8
5,927,634 - -0.2
5,927,634 - -0.2
5,927,634 - -0.8
5,927,635 + +1.8
5,927,635 + -0.2
5,927,635 + -0.2
5,927,636 - -1.4
5,927,636 - +0.2
5,927,636 - +1.6
5,927,636 - -0.8
5,927,646 + -0.8
5,927,646 + -0.8
5,927,646 + +0.8
5,927,646 + +0.8
5,927,646 + -0.8
5,927,646 + +0.8
5,927,646 + -1.2
5,927,646 + -0.4
5,927,646 + +0.4
5,927,646 + -0.1
5,927,646 + +0.8
5,927,647 - +0.4
5,927,647 - -0.2
5,927,647 - +0.8
5,927,647 - -0.6
5,927,647 - +0.2
5,927,647 - -0.8
5,927,647 - +1.8
5,927,647 - -0.0
5,927,683 + -1.2
5,927,683 + +0.2
5,927,683 + +1.3
5,927,683 + -1.4
5,927,683 + -1.7
5,927,683 + +1.1
5,927,683 + +0.8
5,927,683 + +0.0
5,927,683 + -0.6
5,927,683 + +0.4
5,927,683 + +0.2
5,927,684 - +0.8
5,927,684 - +0.8
5,927,684 - -1.0
5,927,684 - -0.8
5,927,786 + AO353_27050 0.50 +0.8
5,927,807 + AO353_27050 0.60 +0.8
5,927,807 + AO353_27050 0.60 -1.1
5,927,807 + AO353_27050 0.60 +0.2
5,927,808 - AO353_27050 0.60 +0.2
5,927,808 - AO353_27050 0.60 -0.4
5,927,809 + AO353_27050 0.60 -2.0
5,927,809 + AO353_27050 0.60 -0.5
5,927,809 + AO353_27050 0.60 +0.4
5,927,809 + AO353_27050 0.60 -1.4
5,927,810 - AO353_27050 0.61 -2.6
5,927,810 - AO353_27050 0.61 +0.8
5,927,810 - AO353_27050 0.61 +0.9
5,927,810 - -0.8
5,927,810 - AO353_27050 0.61 -0.5
5,927,810 - AO353_27050 0.61 -1.0
5,927,810 - AO353_27050 0.61 +0.9
5,927,810 - AO353_27050 0.61 -1.6
5,927,888 + -1.1
5,927,889 - -0.2
5,927,942 + -0.8
5,927,942 + -0.4
5,927,945 - -0.4
5,928,071 + AO353_27055 0.10 +3.8
5,928,295 - -0.6
5,928,365 + +1.8
5,928,365 + +1.3
5,928,365 + +0.3
5,928,365 + -0.9
5,928,366 - +1.8
5,928,366 - +1.5
5,928,366 - -0.2
5,928,366 - -0.5
5,928,366 - -0.7
5,928,366 - -2.7
5,928,366 - +0.2
5,928,366 - -0.5
5,928,367 + -0.6
5,928,368 - -2.2
5,928,439 + -0.0
5,928,440 - -1.5
5,928,461 - AO353_27060 0.12 -1.0
5,928,493 + AO353_27060 0.15 -1.0
5,928,893 + AO353_27060 0.56 -0.7
5,929,016 + AO353_27060 0.69 +0.2
5,929,016 + AO353_27060 0.69 +0.2
5,929,016 + AO353_27060 0.69 -1.1
5,929,046 + AO353_27060 0.72 -1.9
5,929,046 + AO353_27060 0.72 +0.2
5,929,046 + AO353_27060 0.72 -0.2
5,929,227 + -0.2
5,929,227 + +0.4
5,929,253 + +0.8
5,929,253 + +0.6
5,929,253 + -1.2
5,929,253 + +1.8
5,929,253 + -1.5
5,929,253 + -0.1
5,929,253 + -0.7
5,929,253 + +0.1
5,929,253 + -0.0
5,929,253 + +0.0
5,929,253 + +0.2
5,929,253 + -0.1
5,929,253 + +0.3
5,929,254 - +1.0
5,929,254 - -1.0
5,929,254 - +1.0
5,929,254 - -0.7
5,929,254 - +0.4
5,929,254 - -0.0
5,929,254 - +1.2
5,929,254 - +2.8
5,929,254 - -0.6
5,929,254 - -0.6
5,929,254 - -0.2
5,929,254 - -0.8
5,929,254 - +0.8
5,929,254 - +0.3
5,929,254 - +0.0
5,929,318 + +0.0
5,929,318 + +0.6
5,929,318 + +0.8
5,929,319 - +0.5
5,929,319 - -0.2
5,929,418 - -1.1
5,929,418 - +0.4
5,929,418 - -1.9
5,929,645 + AO353_27065 0.26 -1.4
5,929,646 - AO353_27065 0.26 +1.8
5,929,646 - AO353_27065 0.26 +0.6
5,929,788 - AO353_27065 0.38 -1.7
5,929,788 - AO353_27065 0.38 +0.2
5,929,821 - AO353_27065 0.40 -0.0
5,929,821 - AO353_27065 0.40 -0.5
5,929,821 - AO353_27065 0.40 -0.0
5,929,821 - AO353_27065 0.40 -1.6
5,929,821 - AO353_27065 0.40 +0.3
5,929,918 + AO353_27065 0.48 +0.3
5,929,918 + AO353_27065 0.48 -0.2
5,929,919 - AO353_27065 0.48 -0.3
5,929,919 - AO353_27065 0.48 +0.3
5,930,011 - AO353_27065 0.55 -0.2
5,930,011 - AO353_27065 0.55 +0.2
5,930,023 + AO353_27065 0.56 -0.4
5,930,087 - AO353_27065 0.61 +1.2
5,930,087 - AO353_27065 0.61 -1.2
5,930,185 + AO353_27065 0.69 +0.6
5,930,228 - AO353_27065 0.73 +0.8
5,930,236 + AO353_27065 0.73 -0.9
5,930,314 + AO353_27065 0.80 -0.9
5,930,315 - AO353_27065 0.80 -0.1

Or see this region's nucleotide sequence