Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27045 and AO353_27050 are separated by 90 nucleotides AO353_27050 and AO353_27055 are separated by 150 nucleotides AO353_27055 and AO353_27060 are separated by 68 nucleotides AO353_27060 and AO353_27065 are separated by 1 nucleotides
AO353_27045: AO353_27045 - ABC transporter ATP-binding protein, at 5,925,930 to 5,927,582
_27045
AO353_27050: AO353_27050 - hypothetical protein, at 5,927,673 to 5,927,897
_27050
AO353_27055: AO353_27055 - hypothetical protein, at 5,928,048 to 5,928,278
_27055
AO353_27060: AO353_27060 - XshC-Cox1 family protein, at 5,928,347 to 5,929,318
_27060
AO353_27065: AO353_27065 - cytochrome C oxidase Cbb3, at 5,929,320 to 5,930,567
_27065
Position (kb)
5928
5929
5930 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5927.356 kb on + strand, within AO353_27045 at 5927.519 kb on + strand at 5927.519 kb on + strand at 5927.519 kb on + strand at 5927.519 kb on + strand at 5927.519 kb on + strand at 5927.520 kb on - strand at 5927.520 kb on - strand at 5927.520 kb on - strand at 5927.520 kb on - strand at 5927.633 kb on + strand at 5927.633 kb on + strand at 5927.633 kb on + strand at 5927.633 kb on + strand at 5927.633 kb on + strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.634 kb on - strand at 5927.635 kb on + strand at 5927.635 kb on + strand at 5927.635 kb on + strand at 5927.636 kb on - strand at 5927.636 kb on - strand at 5927.636 kb on - strand at 5927.636 kb on - strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.646 kb on + strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.647 kb on - strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.683 kb on + strand at 5927.684 kb on - strand at 5927.684 kb on - strand at 5927.684 kb on - strand at 5927.684 kb on - strand at 5927.786 kb on + strand, within AO353_27050 at 5927.807 kb on + strand, within AO353_27050 at 5927.807 kb on + strand, within AO353_27050 at 5927.807 kb on + strand, within AO353_27050 at 5927.808 kb on - strand, within AO353_27050 at 5927.808 kb on - strand, within AO353_27050 at 5927.809 kb on + strand, within AO353_27050 at 5927.809 kb on + strand, within AO353_27050 at 5927.809 kb on + strand, within AO353_27050 at 5927.809 kb on + strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.810 kb on - strand, within AO353_27050 at 5927.888 kb on + strand at 5927.889 kb on - strand at 5927.942 kb on + strand at 5927.942 kb on + strand at 5927.945 kb on - strand at 5928.071 kb on + strand, within AO353_27055 at 5928.295 kb on - strand at 5928.365 kb on + strand at 5928.365 kb on + strand at 5928.365 kb on + strand at 5928.365 kb on + strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.366 kb on - strand at 5928.367 kb on + strand at 5928.368 kb on - strand at 5928.439 kb on + strand at 5928.440 kb on - strand at 5928.461 kb on - strand, within AO353_27060 at 5928.493 kb on + strand, within AO353_27060 at 5928.893 kb on + strand, within AO353_27060 at 5929.016 kb on + strand, within AO353_27060 at 5929.016 kb on + strand, within AO353_27060 at 5929.016 kb on + strand, within AO353_27060 at 5929.046 kb on + strand, within AO353_27060 at 5929.046 kb on + strand, within AO353_27060 at 5929.046 kb on + strand, within AO353_27060 at 5929.227 kb on + strand at 5929.227 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.253 kb on + strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.254 kb on - strand at 5929.318 kb on + strand at 5929.318 kb on + strand at 5929.318 kb on + strand at 5929.319 kb on - strand at 5929.319 kb on - strand at 5929.418 kb on - strand at 5929.418 kb on - strand at 5929.418 kb on - strand at 5929.645 kb on + strand, within AO353_27065 at 5929.646 kb on - strand, within AO353_27065 at 5929.646 kb on - strand, within AO353_27065 at 5929.788 kb on - strand, within AO353_27065 at 5929.788 kb on - strand, within AO353_27065 at 5929.821 kb on - strand, within AO353_27065 at 5929.821 kb on - strand, within AO353_27065 at 5929.821 kb on - strand, within AO353_27065 at 5929.821 kb on - strand, within AO353_27065 at 5929.821 kb on - strand, within AO353_27065 at 5929.918 kb on + strand, within AO353_27065 at 5929.918 kb on + strand, within AO353_27065 at 5929.919 kb on - strand, within AO353_27065 at 5929.919 kb on - strand, within AO353_27065 at 5930.011 kb on - strand, within AO353_27065 at 5930.011 kb on - strand, within AO353_27065 at 5930.023 kb on + strand, within AO353_27065 at 5930.087 kb on - strand, within AO353_27065 at 5930.087 kb on - strand, within AO353_27065 at 5930.185 kb on + strand, within AO353_27065 at 5930.228 kb on - strand, within AO353_27065 at 5930.236 kb on + strand, within AO353_27065 at 5930.314 kb on + strand, within AO353_27065 at 5930.315 kb on - strand, within AO353_27065
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 5,927,356 + AO353_27045 0.86 +0.3 5,927,519 + +0.4 5,927,519 + -0.6 5,927,519 + +0.2 5,927,519 + -1.4 5,927,519 + -1.1 5,927,520 - +0.2 5,927,520 - +0.2 5,927,520 - -0.4 5,927,520 - +0.6 5,927,633 + +0.2 5,927,633 + +0.8 5,927,633 + +0.5 5,927,633 + -0.0 5,927,633 + -1.9 5,927,634 - -3.1 5,927,634 - +1.0 5,927,634 - -0.7 5,927,634 - +0.8 5,927,634 - -0.2 5,927,634 - -0.2 5,927,634 - -0.8 5,927,635 + +1.8 5,927,635 + -0.2 5,927,635 + -0.2 5,927,636 - -1.4 5,927,636 - +0.2 5,927,636 - +1.6 5,927,636 - -0.8 5,927,646 + -0.8 5,927,646 + -0.8 5,927,646 + +0.8 5,927,646 + +0.8 5,927,646 + -0.8 5,927,646 + +0.8 5,927,646 + -1.2 5,927,646 + -0.4 5,927,646 + +0.4 5,927,646 + -0.1 5,927,646 + +0.8 5,927,647 - +0.4 5,927,647 - -0.2 5,927,647 - +0.8 5,927,647 - -0.6 5,927,647 - +0.2 5,927,647 - -0.8 5,927,647 - +1.8 5,927,647 - -0.0 5,927,683 + -1.2 5,927,683 + +0.2 5,927,683 + +1.3 5,927,683 + -1.4 5,927,683 + -1.7 5,927,683 + +1.1 5,927,683 + +0.8 5,927,683 + +0.0 5,927,683 + -0.6 5,927,683 + +0.4 5,927,683 + +0.2 5,927,684 - +0.8 5,927,684 - +0.8 5,927,684 - -1.0 5,927,684 - -0.8 5,927,786 + AO353_27050 0.50 +0.8 5,927,807 + AO353_27050 0.60 +0.8 5,927,807 + AO353_27050 0.60 -1.1 5,927,807 + AO353_27050 0.60 +0.2 5,927,808 - AO353_27050 0.60 +0.2 5,927,808 - AO353_27050 0.60 -0.4 5,927,809 + AO353_27050 0.60 -2.0 5,927,809 + AO353_27050 0.60 -0.5 5,927,809 + AO353_27050 0.60 +0.4 5,927,809 + AO353_27050 0.60 -1.4 5,927,810 - AO353_27050 0.61 -2.6 5,927,810 - AO353_27050 0.61 +0.8 5,927,810 - AO353_27050 0.61 +0.9 5,927,810 - -0.8 5,927,810 - AO353_27050 0.61 -0.5 5,927,810 - AO353_27050 0.61 -1.0 5,927,810 - AO353_27050 0.61 +0.9 5,927,810 - AO353_27050 0.61 -1.6 5,927,888 + -1.1 5,927,889 - -0.2 5,927,942 + -0.8 5,927,942 + -0.4 5,927,945 - -0.4 5,928,071 + AO353_27055 0.10 +3.8 5,928,295 - -0.6 5,928,365 + +1.8 5,928,365 + +1.3 5,928,365 + +0.3 5,928,365 + -0.9 5,928,366 - +1.8 5,928,366 - +1.5 5,928,366 - -0.2 5,928,366 - -0.5 5,928,366 - -0.7 5,928,366 - -2.7 5,928,366 - +0.2 5,928,366 - -0.5 5,928,367 + -0.6 5,928,368 - -2.2 5,928,439 + -0.0 5,928,440 - -1.5 5,928,461 - AO353_27060 0.12 -1.0 5,928,493 + AO353_27060 0.15 -1.0 5,928,893 + AO353_27060 0.56 -0.7 5,929,016 + AO353_27060 0.69 +0.2 5,929,016 + AO353_27060 0.69 +0.2 5,929,016 + AO353_27060 0.69 -1.1 5,929,046 + AO353_27060 0.72 -1.9 5,929,046 + AO353_27060 0.72 +0.2 5,929,046 + AO353_27060 0.72 -0.2 5,929,227 + -0.2 5,929,227 + +0.4 5,929,253 + +0.8 5,929,253 + +0.6 5,929,253 + -1.2 5,929,253 + +1.8 5,929,253 + -1.5 5,929,253 + -0.1 5,929,253 + -0.7 5,929,253 + +0.1 5,929,253 + -0.0 5,929,253 + +0.0 5,929,253 + +0.2 5,929,253 + -0.1 5,929,253 + +0.3 5,929,254 - +1.0 5,929,254 - -1.0 5,929,254 - +1.0 5,929,254 - -0.7 5,929,254 - +0.4 5,929,254 - -0.0 5,929,254 - +1.2 5,929,254 - +2.8 5,929,254 - -0.6 5,929,254 - -0.6 5,929,254 - -0.2 5,929,254 - -0.8 5,929,254 - +0.8 5,929,254 - +0.3 5,929,254 - +0.0 5,929,318 + +0.0 5,929,318 + +0.6 5,929,318 + +0.8 5,929,319 - +0.5 5,929,319 - -0.2 5,929,418 - -1.1 5,929,418 - +0.4 5,929,418 - -1.9 5,929,645 + AO353_27065 0.26 -1.4 5,929,646 - AO353_27065 0.26 +1.8 5,929,646 - AO353_27065 0.26 +0.6 5,929,788 - AO353_27065 0.38 -1.7 5,929,788 - AO353_27065 0.38 +0.2 5,929,821 - AO353_27065 0.40 -0.0 5,929,821 - AO353_27065 0.40 -0.5 5,929,821 - AO353_27065 0.40 -0.0 5,929,821 - AO353_27065 0.40 -1.6 5,929,821 - AO353_27065 0.40 +0.3 5,929,918 + AO353_27065 0.48 +0.3 5,929,918 + AO353_27065 0.48 -0.2 5,929,919 - AO353_27065 0.48 -0.3 5,929,919 - AO353_27065 0.48 +0.3 5,930,011 - AO353_27065 0.55 -0.2 5,930,011 - AO353_27065 0.55 +0.2 5,930,023 + AO353_27065 0.56 -0.4 5,930,087 - AO353_27065 0.61 +1.2 5,930,087 - AO353_27065 0.61 -1.2 5,930,185 + AO353_27065 0.69 +0.6 5,930,228 - AO353_27065 0.73 +0.8 5,930,236 + AO353_27065 0.73 -0.9 5,930,314 + AO353_27065 0.80 -0.9 5,930,315 - AO353_27065 0.80 -0.1
Or see this region's nucleotide sequence