Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26785

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26780 and AO353_26785 are separated by 536 nucleotidesAO353_26785 and AO353_26790 are separated by 176 nucleotides AO353_26780: AO353_26780 - DNA topoisomerase III, at 5,865,542 to 5,867,485 _26780 AO353_26785: AO353_26785 - hypothetical protein, at 5,868,022 to 5,868,387 _26785 AO353_26790: AO353_26790 - Glutaminase (EC 3.5.1.2) (from data), at 5,868,564 to 5,869,472 _26790 Position (kb) 5868 5869Strain fitness (log2 ratio) -2 -1 0 1 2at 5867.441 kb on - strandat 5867.441 kb on - strandat 5867.441 kb on - strandat 5867.483 kb on + strandat 5867.483 kb on + strandat 5867.484 kb on - strandat 5867.484 kb on - strandat 5867.484 kb on - strandat 5867.686 kb on + strandat 5867.686 kb on + strandat 5867.686 kb on + strandat 5867.686 kb on + strandat 5867.687 kb on - strandat 5867.718 kb on - strandat 5867.740 kb on - strandat 5867.827 kb on + strandat 5867.894 kb on + strandat 5867.895 kb on - strandat 5867.895 kb on - strandat 5867.895 kb on - strandat 5867.895 kb on - strandat 5867.947 kb on + strandat 5867.947 kb on + strandat 5867.947 kb on + strandat 5867.947 kb on + strandat 5867.947 kb on + strandat 5867.947 kb on + strandat 5867.948 kb on - strandat 5867.948 kb on - strandat 5867.951 kb on - strandat 5867.951 kb on - strandat 5867.984 kb on - strandat 5868.003 kb on + strandat 5868.004 kb on - strandat 5868.004 kb on - strandat 5868.004 kb on - strandat 5868.004 kb on - strandat 5868.004 kb on - strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.007 kb on + strandat 5868.008 kb on - strandat 5868.008 kb on - strandat 5868.008 kb on - strandat 5868.008 kb on - strandat 5868.127 kb on + strand, within AO353_26785at 5868.127 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.204 kb on + strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.205 kb on - strand, within AO353_26785at 5868.294 kb on + strand, within AO353_26785at 5868.385 kb on + strandat 5868.385 kb on + strandat 5868.441 kb on + strandat 5868.441 kb on + strandat 5868.533 kb on + strandat 5868.533 kb on + strandat 5868.533 kb on + strandat 5868.533 kb on + strandat 5868.533 kb on + strandat 5868.534 kb on - strandat 5868.565 kb on + strandat 5868.565 kb on + strandat 5868.565 kb on + strandat 5868.565 kb on + strandat 5868.566 kb on - strandat 5868.566 kb on - strandat 5868.566 kb on - strandat 5868.566 kb on - strandat 5868.566 kb on - strandat 5868.706 kb on - strand, within AO353_26790at 5868.706 kb on - strand, within AO353_26790at 5868.760 kb on + strand, within AO353_26790at 5868.760 kb on + strand, within AO353_26790at 5868.761 kb on - strand, within AO353_26790at 5868.916 kb on + strand, within AO353_26790at 5868.916 kb on + strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.917 kb on - strand, within AO353_26790at 5868.936 kb on + strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.937 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5868.974 kb on - strand, within AO353_26790at 5869.289 kb on + strand, within AO353_26790at 5869.289 kb on + strand, within AO353_26790at 5869.290 kb on - strand, within AO353_26790at 5869.290 kb on - strand, within AO353_26790at 5869.330 kb on + strand, within AO353_26790at 5869.351 kb on + strand, within AO353_26790at 5869.351 kb on + strand, within AO353_26790at 5869.352 kb on - strand, within AO353_26790

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,867,441 - -1.0
5,867,441 - -0.4
5,867,441 - -1.4
5,867,483 + -1.1
5,867,483 + +1.3
5,867,484 - +0.2
5,867,484 - +0.7
5,867,484 - -0.4
5,867,686 + +0.7
5,867,686 + -0.6
5,867,686 + -1.6
5,867,686 + -1.1
5,867,687 - -0.7
5,867,718 - -1.0
5,867,740 - +0.4
5,867,827 + -1.5
5,867,894 + +1.1
5,867,895 - +0.2
5,867,895 - -1.7
5,867,895 - +0.3
5,867,895 - +0.2
5,867,947 + -0.4
5,867,947 + +0.2
5,867,947 + -0.8
5,867,947 + +0.7
5,867,947 + -0.7
5,867,947 + +2.1
5,867,948 - +0.9
5,867,948 - +0.3
5,867,951 - +0.6
5,867,951 - +0.8
5,867,984 - -0.6
5,868,003 + +0.4
5,868,004 - +0.3
5,868,004 - -1.0
5,868,004 - -0.6
5,868,004 - +0.9
5,868,004 - -2.2
5,868,007 + +0.4
5,868,007 + -1.1
5,868,007 + +0.2
5,868,007 + +1.2
5,868,007 + -1.4
5,868,007 + +0.7
5,868,007 + -0.0
5,868,007 + +0.2
5,868,007 + -1.3
5,868,007 + +1.4
5,868,008 - -0.3
5,868,008 - +1.2
5,868,008 - -0.3
5,868,008 - -0.1
5,868,127 + AO353_26785 0.29 -1.4
5,868,127 + AO353_26785 0.29 -2.0
5,868,204 + AO353_26785 0.50 -0.6
5,868,204 + AO353_26785 0.50 -0.7
5,868,204 + AO353_26785 0.50 -2.1
5,868,204 + AO353_26785 0.50 -0.8
5,868,204 + AO353_26785 0.50 -1.7
5,868,204 + AO353_26785 0.50 -1.1
5,868,204 + AO353_26785 0.50 +1.7
5,868,205 - AO353_26785 0.50 -0.5
5,868,205 - AO353_26785 0.50 -0.8
5,868,205 - AO353_26785 0.50 -1.7
5,868,205 - AO353_26785 0.50 -1.1
5,868,205 - AO353_26785 0.50 +0.5
5,868,205 - AO353_26785 0.50 +0.5
5,868,205 - AO353_26785 0.50 -1.5
5,868,205 - AO353_26785 0.50 -1.7
5,868,294 + AO353_26785 0.74 -0.8
5,868,385 + +0.7
5,868,385 + +1.1
5,868,441 + -0.6
5,868,441 + +2.3
5,868,533 + +1.0
5,868,533 + -1.0
5,868,533 + +0.9
5,868,533 + +1.3
5,868,533 + -1.7
5,868,534 - -1.0
5,868,565 + -1.2
5,868,565 + -1.4
5,868,565 + -1.4
5,868,565 + +1.4
5,868,566 - +0.7
5,868,566 - -0.1
5,868,566 - +0.7
5,868,566 - +0.0
5,868,566 - -0.3
5,868,706 - AO353_26790 0.16 -1.4
5,868,706 - AO353_26790 0.16 -0.4
5,868,760 + AO353_26790 0.22 -0.3
5,868,760 + AO353_26790 0.22 -0.1
5,868,761 - AO353_26790 0.22 -0.6
5,868,916 + AO353_26790 0.39 +0.1
5,868,916 + AO353_26790 0.39 -0.6
5,868,917 - AO353_26790 0.39 -2.3
5,868,917 - AO353_26790 0.39 -1.8
5,868,917 - AO353_26790 0.39 -1.4
5,868,917 - AO353_26790 0.39 -1.6
5,868,936 + AO353_26790 0.41 -1.8
5,868,937 - AO353_26790 0.41 +1.7
5,868,937 - AO353_26790 0.41 -0.3
5,868,937 - AO353_26790 0.41 -0.0
5,868,974 - AO353_26790 0.45 +0.7
5,868,974 - AO353_26790 0.45 +0.7
5,868,974 - AO353_26790 0.45 +0.1
5,869,289 + AO353_26790 0.80 -2.3
5,869,289 + AO353_26790 0.80 +0.0
5,869,290 - AO353_26790 0.80 -0.8
5,869,290 - AO353_26790 0.80 -0.3
5,869,330 + AO353_26790 0.84 -1.3
5,869,351 + AO353_26790 0.87 -1.6
5,869,351 + AO353_26790 0.87 -0.6
5,869,352 - AO353_26790 0.87 -0.3

Or see this region's nucleotide sequence