Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26465

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26460 and AO353_26465 are separated by 765 nucleotidesAO353_26465 and AO353_26470 are separated by 65 nucleotidesAO353_26470 and AO353_26475 are separated by 54 nucleotides AO353_26460: AO353_26460 - hypothetical protein, at 5,798,139 to 5,798,525 _26460 AO353_26465: AO353_26465 - hypothetical protein, at 5,799,291 to 5,799,527 _26465 AO353_26470: AO353_26470 - hypothetical protein, at 5,799,593 to 5,799,826 _26470 AO353_26475: AO353_26475 - hypothetical protein, at 5,799,881 to 5,800,117 _26475 Position (kb) 5799 5800Strain fitness (log2 ratio) -2 -1 0 1 2at 5798.421 kb on + strand, within AO353_26460at 5798.421 kb on + strand, within AO353_26460at 5798.421 kb on + strand, within AO353_26460at 5798.422 kb on - strand, within AO353_26460at 5798.422 kb on - strand, within AO353_26460at 5798.422 kb on - strand, within AO353_26460at 5798.422 kb on - strand, within AO353_26460at 5798.492 kb on - strandat 5798.517 kb on + strandat 5798.517 kb on + strandat 5798.517 kb on + strandat 5798.524 kb on - strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.556 kb on + strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.557 kb on - strandat 5798.558 kb on + strandat 5798.558 kb on + strandat 5798.558 kb on + strandat 5798.558 kb on + strandat 5798.558 kb on + strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.559 kb on - strandat 5798.567 kb on + strandat 5798.595 kb on + strandat 5798.686 kb on + strandat 5798.686 kb on + strandat 5798.686 kb on + strandat 5798.686 kb on + strandat 5798.687 kb on - strandat 5798.687 kb on - strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.776 kb on + strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.777 kb on - strandat 5798.784 kb on - strandat 5798.786 kb on + strandat 5798.801 kb on + strandat 5798.802 kb on - strandat 5798.976 kb on + strandat 5798.976 kb on + strandat 5798.976 kb on + strandat 5799.064 kb on - strandat 5799.118 kb on - strandat 5799.130 kb on - strandat 5799.180 kb on + strandat 5799.180 kb on + strandat 5799.181 kb on - strandat 5799.181 kb on - strandat 5799.181 kb on - strandat 5799.181 kb on - strandat 5799.181 kb on - strandat 5799.288 kb on + strandat 5799.288 kb on + strandat 5799.288 kb on + strandat 5799.288 kb on + strandat 5799.289 kb on - strandat 5799.289 kb on - strandat 5799.289 kb on - strandat 5799.289 kb on - strandat 5799.292 kb on + strandat 5799.293 kb on - strandat 5799.303 kb on + strandat 5799.303 kb on + strandat 5799.304 kb on - strandat 5799.368 kb on + strand, within AO353_26465at 5799.413 kb on + strand, within AO353_26465at 5799.413 kb on + strand, within AO353_26465at 5799.413 kb on + strand, within AO353_26465at 5799.413 kb on + strand, within AO353_26465at 5799.414 kb on - strand, within AO353_26465at 5799.414 kb on - strand, within AO353_26465at 5799.527 kb on + strandat 5799.528 kb on - strandat 5799.528 kb on - strandat 5799.572 kb on - strandat 5799.594 kb on + strandat 5799.594 kb on + strandat 5799.594 kb on + strandat 5799.594 kb on + strandat 5799.594 kb on + strandat 5799.594 kb on + strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.595 kb on - strandat 5799.596 kb on + strandat 5799.597 kb on - strandat 5799.597 kb on - strandat 5799.856 kb on + strandat 5799.893 kb on + strandat 5799.893 kb on + strandat 5799.894 kb on - strandat 5799.898 kb on + strandat 5799.898 kb on + strandat 5799.898 kb on + strandat 5799.898 kb on + strandat 5799.899 kb on - strandat 5799.899 kb on - strandat 5799.899 kb on - strandat 5799.899 kb on - strandat 5799.902 kb on - strandat 5799.902 kb on - strandat 5799.902 kb on - strandat 5799.940 kb on + strand, within AO353_26475at 5799.940 kb on + strand, within AO353_26475at 5799.940 kb on + strand, within AO353_26475at 5799.941 kb on - strand, within AO353_26475at 5799.941 kb on - strand, within AO353_26475at 5799.941 kb on - strand, within AO353_26475at 5799.975 kb on + strand, within AO353_26475at 5800.024 kb on + strand, within AO353_26475at 5800.063 kb on + strand, within AO353_26475at 5800.063 kb on + strand, within AO353_26475at 5800.064 kb on - strand, within AO353_26475at 5800.064 kb on - strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.080 kb on + strand, within AO353_26475at 5800.081 kb on - strand, within AO353_26475at 5800.081 kb on - strand, within AO353_26475at 5800.081 kb on - strand, within AO353_26475at 5800.081 kb on - strand, within AO353_26475at 5800.109 kb on + strandat 5800.110 kb on - strandat 5800.110 kb on - strandat 5800.110 kb on - strandat 5800.110 kb on - strandat 5800.132 kb on + strandat 5800.132 kb on + strandat 5800.133 kb on - strandat 5800.149 kb on + strandat 5800.149 kb on + strandat 5800.150 kb on - strandat 5800.150 kb on - strandat 5800.150 kb on - strandat 5800.150 kb on - strandat 5800.153 kb on - strandat 5800.163 kb on + strandat 5800.175 kb on + strandat 5800.175 kb on + strandat 5800.175 kb on + strandat 5800.176 kb on - strandat 5800.176 kb on - strandat 5800.176 kb on - strandat 5800.176 kb on - strandat 5800.176 kb on - strandat 5800.295 kb on + strandat 5800.296 kb on - strandat 5800.296 kb on - strandat 5800.405 kb on + strandat 5800.406 kb on - strandat 5800.465 kb on + strandat 5800.465 kb on + strandat 5800.466 kb on - strandat 5800.466 kb on - strandat 5800.491 kb on + strandat 5800.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,798,421 + AO353_26460 0.73 -0.9
5,798,421 + AO353_26460 0.73 -1.1
5,798,421 + AO353_26460 0.73 +0.7
5,798,422 - AO353_26460 0.73 +0.2
5,798,422 - AO353_26460 0.73 -1.4
5,798,422 - AO353_26460 0.73 +1.1
5,798,422 - AO353_26460 0.73 -0.6
5,798,492 - +1.1
5,798,517 + -0.1
5,798,517 + -2.1
5,798,517 + +0.4
5,798,524 - +0.3
5,798,556 + +0.6
5,798,556 + -1.4
5,798,556 + -0.3
5,798,556 + -0.2
5,798,556 + -0.6
5,798,556 + +1.1
5,798,556 + -0.3
5,798,556 + -0.9
5,798,556 + +0.1
5,798,556 + -1.4
5,798,556 + -0.1
5,798,556 + +1.2
5,798,557 - +0.4
5,798,557 - -0.9
5,798,557 - +1.7
5,798,557 - -1.0
5,798,557 - +0.8
5,798,557 - +0.4
5,798,557 - +0.1
5,798,557 - -0.1
5,798,557 - -0.1
5,798,557 - -1.1
5,798,557 - +0.3
5,798,557 - -0.2
5,798,558 + -1.6
5,798,558 + +1.7
5,798,558 + -0.8
5,798,558 + +0.6
5,798,558 + -1.1
5,798,559 - -1.0
5,798,559 - -0.3
5,798,559 - -0.1
5,798,559 - -0.4
5,798,559 - +0.3
5,798,559 - -2.0
5,798,559 - -0.4
5,798,559 - -1.1
5,798,559 - +0.5
5,798,559 - -0.4
5,798,559 - -0.9
5,798,559 - -0.1
5,798,567 + +1.7
5,798,595 + +1.0
5,798,686 + -0.6
5,798,686 + -0.6
5,798,686 + +0.7
5,798,686 + -0.4
5,798,687 - +0.0
5,798,687 - +2.7
5,798,776 + +0.1
5,798,776 + +0.4
5,798,776 + +0.5
5,798,776 + +0.7
5,798,776 + -0.3
5,798,776 + -0.2
5,798,776 + -0.9
5,798,777 - -0.9
5,798,777 - -1.6
5,798,777 - -0.9
5,798,777 - +0.5
5,798,777 - -0.9
5,798,777 - +1.1
5,798,777 - +0.0
5,798,777 - +1.7
5,798,777 - +0.1
5,798,777 - -1.1
5,798,784 - -0.1
5,798,786 + -1.1
5,798,801 + +2.7
5,798,802 - +0.1
5,798,976 + +0.7
5,798,976 + +0.1
5,798,976 + -0.3
5,799,064 - +0.6
5,799,118 - +0.3
5,799,130 - +0.0
5,799,180 + -0.3
5,799,180 + -0.9
5,799,181 - +0.1
5,799,181 - -0.1
5,799,181 - +0.1
5,799,181 - -1.3
5,799,181 - +0.3
5,799,288 + -1.9
5,799,288 + -2.0
5,799,288 + -0.3
5,799,288 + -0.0
5,799,289 - -0.2
5,799,289 - -0.6
5,799,289 - -1.3
5,799,289 - -1.7
5,799,292 + -2.0
5,799,293 - -1.3
5,799,303 + -0.6
5,799,303 + -0.6
5,799,304 - -0.4
5,799,368 + AO353_26465 0.32 -0.2
5,799,413 + AO353_26465 0.51 -1.6
5,799,413 + AO353_26465 0.51 -0.9
5,799,413 + AO353_26465 0.51 -1.9
5,799,413 + AO353_26465 0.51 -1.0
5,799,414 - AO353_26465 0.52 +0.1
5,799,414 - AO353_26465 0.52 -1.2
5,799,527 + -0.6
5,799,528 - +0.3
5,799,528 - -1.9
5,799,572 - -0.1
5,799,594 + +1.3
5,799,594 + -0.3
5,799,594 + -0.3
5,799,594 + +0.3
5,799,594 + -0.3
5,799,594 + -0.7
5,799,595 - +1.7
5,799,595 - -0.6
5,799,595 - +0.7
5,799,595 - -0.6
5,799,595 - -1.1
5,799,595 - +0.3
5,799,595 - +1.7
5,799,595 - +0.1
5,799,595 - -0.3
5,799,596 + +0.9
5,799,597 - +0.1
5,799,597 - +0.1
5,799,856 + -1.1
5,799,893 + -0.8
5,799,893 + -0.1
5,799,894 - -1.0
5,799,898 + +0.1
5,799,898 + +0.3
5,799,898 + -0.6
5,799,898 + -1.6
5,799,899 - -1.6
5,799,899 - +1.0
5,799,899 - +0.0
5,799,899 - +0.1
5,799,902 - -0.3
5,799,902 - +0.5
5,799,902 - -1.2
5,799,940 + AO353_26475 0.25 -0.3
5,799,940 + AO353_26475 0.25 +0.4
5,799,940 + AO353_26475 0.25 +0.6
5,799,941 - AO353_26475 0.25 +0.4
5,799,941 - AO353_26475 0.25 +0.7
5,799,941 - AO353_26475 0.25 -1.4
5,799,975 + AO353_26475 0.40 +0.1
5,800,024 + AO353_26475 0.60 -1.1
5,800,063 + AO353_26475 0.77 +0.1
5,800,063 + AO353_26475 0.77 -1.1
5,800,064 - AO353_26475 0.77 -1.0
5,800,064 - AO353_26475 0.77 +0.7
5,800,080 + AO353_26475 0.84 -0.8
5,800,080 + AO353_26475 0.84 -0.7
5,800,080 + AO353_26475 0.84 -0.3
5,800,080 + AO353_26475 0.84 -0.3
5,800,080 + AO353_26475 0.84 -0.1
5,800,080 + AO353_26475 0.84 +0.7
5,800,080 + AO353_26475 0.84 -0.1
5,800,080 + AO353_26475 0.84 +0.1
5,800,080 + AO353_26475 0.84 -0.2
5,800,081 - AO353_26475 0.84 -0.9
5,800,081 - AO353_26475 0.84 -0.9
5,800,081 - AO353_26475 0.84 +0.7
5,800,081 - AO353_26475 0.84 -0.4
5,800,109 + -0.7
5,800,110 - -0.7
5,800,110 - +0.1
5,800,110 - +0.7
5,800,110 - -0.1
5,800,132 + -0.3
5,800,132 + -2.5
5,800,133 - +0.4
5,800,149 + -1.0
5,800,149 + -0.7
5,800,150 - -0.7
5,800,150 - -1.4
5,800,150 - -0.4
5,800,150 - -0.7
5,800,153 - +0.6
5,800,163 + -0.6
5,800,175 + +0.7
5,800,175 + -1.4
5,800,175 + -1.1
5,800,176 - -1.4
5,800,176 - -0.1
5,800,176 - -1.8
5,800,176 - -0.4
5,800,176 - -0.8
5,800,295 + -0.6
5,800,296 - +1.3
5,800,296 - +0.9
5,800,405 + -1.6
5,800,406 - -0.4
5,800,465 + -0.1
5,800,465 + +0.1
5,800,466 - -1.3
5,800,466 - -0.1
5,800,491 + +1.3
5,800,492 - +1.7

Or see this region's nucleotide sequence