Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26310 and AO353_26315 are separated by 10 nucleotides AO353_26315 and AO353_26320 are separated by 5 nucleotides AO353_26320 and AO353_26325 overlap by 14 nucleotides AO353_26325 and AO353_26330 are separated by 1 nucleotides
AO353_26310: AO353_26310 - hypothetical protein, at 5,778,873 to 5,779,460
_26310
AO353_26315: AO353_26315 - hypothetical protein, at 5,779,471 to 5,779,971
_26315
AO353_26320: AO353_26320 - hypothetical protein, at 5,779,977 to 5,780,771
_26320
AO353_26325: AO353_26325 - phage replication protein, at 5,780,758 to 5,781,741
_26325
AO353_26330: AO353_26330 - Rha family transcriptional regulator, at 5,781,743 to 5,782,549
_26330
Position (kb) 5779
5780
5781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5779.004 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.067 kb on - strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.472 kb on + strand at 5779.590 kb on + strand, within AO353_26315 at 5779.590 kb on + strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.645 kb on + strand, within AO353_26315 at 5779.646 kb on - strand, within AO353_26315 at 5779.681 kb on + strand, within AO353_26315 at 5779.682 kb on - strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.823 kb on + strand, within AO353_26315 at 5779.824 kb on - strand, within AO353_26315 at 5779.905 kb on - strand, within AO353_26315 at 5779.998 kb on + strand at 5780.030 kb on + strand at 5780.030 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.043 kb on - strand at 5780.233 kb on + strand, within AO353_26320 at 5780.268 kb on - strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.649 kb on + strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.650 kb on - strand, within AO353_26320 at 5780.699 kb on + strand at 5780.765 kb on + strand at 5780.765 kb on + strand at 5780.906 kb on + strand, within AO353_26325 at 5780.906 kb on + strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325 at 5780.907 kb on - strand, within AO353_26325 at 5781.080 kb on + strand, within AO353_26325 at 5781.104 kb on + strand, within AO353_26325 at 5781.104 kb on + strand, within AO353_26325 at 5781.104 kb on + strand, within AO353_26325 at 5781.104 kb on + strand, within AO353_26325 at 5781.105 kb on - strand, within AO353_26325 at 5781.105 kb on - strand, within AO353_26325 at 5781.105 kb on - strand, within AO353_26325 at 5781.105 kb on - strand, within AO353_26325 at 5781.251 kb on - strand, within AO353_26325 at 5781.251 kb on - strand, within AO353_26325 at 5781.288 kb on + strand, within AO353_26325 at 5781.361 kb on - strand, within AO353_26325 at 5781.369 kb on + strand, within AO353_26325 at 5781.370 kb on - strand, within AO353_26325 at 5781.370 kb on - strand, within AO353_26325 at 5781.413 kb on + strand, within AO353_26325 at 5781.435 kb on + strand, within AO353_26325 at 5781.436 kb on - strand, within AO353_26325 at 5781.436 kb on - strand, within AO353_26325 at 5781.489 kb on + strand, within AO353_26325 at 5781.489 kb on + strand, within AO353_26325 at 5781.490 kb on - strand, within AO353_26325 at 5781.608 kb on + strand at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.608 kb on + strand, within AO353_26325 at 5781.609 kb on - strand, within AO353_26325 at 5781.656 kb on + strand at 5781.657 kb on - strand at 5781.734 kb on + strand at 5781.734 kb on + strand at 5781.734 kb on + strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand at 5781.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 5,779,004 + AO353_26310 0.22 +0.4 5,779,052 + AO353_26310 0.30 +1.1 5,779,052 + AO353_26310 0.30 -1.8 5,779,053 - AO353_26310 0.31 +1.1 5,779,053 - AO353_26310 0.31 +0.1 5,779,053 - AO353_26310 0.31 +1.4 5,779,053 - AO353_26310 0.31 +0.7 5,779,067 - AO353_26310 0.33 -0.4 5,779,165 + AO353_26310 0.50 +1.1 5,779,165 + AO353_26310 0.50 -0.1 5,779,166 - AO353_26310 0.50 -0.3 5,779,166 - AO353_26310 0.50 -0.1 5,779,285 + AO353_26310 0.70 -1.2 5,779,285 + AO353_26310 0.70 +0.1 5,779,472 + +0.4 5,779,590 + AO353_26315 0.24 +2.7 5,779,590 + AO353_26315 0.24 +0.7 5,779,591 - AO353_26315 0.24 +1.5 5,779,591 - AO353_26315 0.24 -1.2 5,779,621 + AO353_26315 0.30 -1.3 5,779,621 + AO353_26315 0.30 -1.9 5,779,621 + AO353_26315 0.30 -0.4 5,779,645 + AO353_26315 0.35 -0.6 5,779,646 - AO353_26315 0.35 -2.2 5,779,681 + AO353_26315 0.42 -1.1 5,779,682 - AO353_26315 0.42 +0.1 5,779,684 + AO353_26315 0.43 -0.2 5,779,684 + AO353_26315 0.43 +0.1 5,779,684 + AO353_26315 0.43 -0.8 5,779,823 + AO353_26315 0.70 +1.1 5,779,824 - AO353_26315 0.70 -2.8 5,779,905 - AO353_26315 0.87 +0.1 5,779,998 + -0.2 5,780,030 + -0.6 5,780,030 + -0.8 5,780,038 + +0.7 5,780,038 + -1.1 5,780,038 + -1.8 5,780,038 + -0.9 5,780,038 + -1.3 5,780,043 - -1.0 5,780,233 + AO353_26320 0.32 -0.3 5,780,268 - AO353_26320 0.37 +0.1 5,780,377 + AO353_26320 0.50 -0.6 5,780,377 + AO353_26320 0.50 -0.9 5,780,378 - AO353_26320 0.50 -1.0 5,780,378 - AO353_26320 0.50 -0.8 5,780,649 + AO353_26320 0.85 +2.3 5,780,649 + AO353_26320 0.85 +0.4 5,780,649 + AO353_26320 0.85 +0.4 5,780,649 + AO353_26320 0.85 -1.3 5,780,649 + AO353_26320 0.85 -1.3 5,780,650 - AO353_26320 0.85 +0.2 5,780,650 - AO353_26320 0.85 +0.7 5,780,650 - AO353_26320 0.85 -1.6 5,780,650 - AO353_26320 0.85 -0.9 5,780,650 - AO353_26320 0.85 -1.3 5,780,650 - AO353_26320 0.85 -2.9 5,780,650 - AO353_26320 0.85 -1.8 5,780,699 + +0.7 5,780,765 + -1.3 5,780,765 + +1.7 5,780,906 + AO353_26325 0.15 +1.1 5,780,906 + AO353_26325 0.15 +1.2 5,780,907 - AO353_26325 0.15 -1.6 5,780,907 - AO353_26325 0.15 +0.6 5,780,907 - AO353_26325 0.15 -1.0 5,781,080 + AO353_26325 0.33 +1.1 5,781,104 + AO353_26325 0.35 +1.5 5,781,104 + AO353_26325 0.35 -0.2 5,781,104 + AO353_26325 0.35 -0.2 5,781,104 + AO353_26325 0.35 -0.7 5,781,105 - AO353_26325 0.35 +0.8 5,781,105 - AO353_26325 0.35 -0.6 5,781,105 - AO353_26325 0.35 +1.7 5,781,105 - AO353_26325 0.35 +0.5 5,781,251 - AO353_26325 0.50 -0.2 5,781,251 - AO353_26325 0.50 -1.1 5,781,288 + AO353_26325 0.54 -0.5 5,781,361 - AO353_26325 0.61 -0.6 5,781,369 + AO353_26325 0.62 +0.7 5,781,370 - AO353_26325 0.62 -0.6 5,781,370 - AO353_26325 0.62 +0.9 5,781,413 + AO353_26325 0.67 -0.4 5,781,435 + AO353_26325 0.69 -0.1 5,781,436 - AO353_26325 0.69 +0.6 5,781,436 - AO353_26325 0.69 -0.0 5,781,489 + AO353_26325 0.74 +0.4 5,781,489 + AO353_26325 0.74 +0.4 5,781,490 - AO353_26325 0.74 -0.6 5,781,608 + +1.7 5,781,608 + AO353_26325 0.86 +1.4 5,781,608 + AO353_26325 0.86 +0.0 5,781,608 + AO353_26325 0.86 -0.6 5,781,608 + AO353_26325 0.86 -0.5 5,781,608 + AO353_26325 0.86 +0.7 5,781,608 + AO353_26325 0.86 -0.1 5,781,608 + AO353_26325 0.86 +1.0 5,781,609 - AO353_26325 0.86 +0.2 5,781,656 + -0.6 5,781,657 - -1.1 5,781,734 + +0.4 5,781,734 + +0.4 5,781,734 + -0.2 5,781,735 - +1.4 5,781,735 - +0.5 5,781,735 - -0.3 5,781,735 - -0.1 5,781,735 - -0.9 5,781,735 - -0.6 5,781,735 - -0.4 5,781,735 - -0.7 5,781,735 - +0.6 5,781,735 - -1.9
Or see this region's nucleotide sequence