Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25480

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25475 and AO353_25480 overlap by 4 nucleotidesAO353_25480 and AO353_25485 are separated by 104 nucleotidesAO353_25485 and AO353_25490 are separated by 120 nucleotides AO353_25475: AO353_25475 - multidrug resistance protein, at 5,616,639 to 5,617,832 _25475 AO353_25480: AO353_25480 - multidrug transporter, at 5,617,829 to 5,619,229 _25480 AO353_25485: AO353_25485 - XRE family transcriptional regulator, at 5,619,334 to 5,620,023 _25485 AO353_25490: AO353_25490 - transcriptional regulator, at 5,620,144 to 5,620,836 _25490 Position (kb) 5617 5618 5619 5620Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 5616.849 kb on + strand, within AO353_25475at 5616.849 kb on + strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.850 kb on - strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.853 kb on + strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5616.854 kb on - strand, within AO353_25475at 5617.363 kb on + strandat 5617.607 kb on + strand, within AO353_25475at 5617.823 kb on + strandat 5617.965 kb on + strandat 5618.642 kb on + strand, within AO353_25480at 5618.642 kb on + strand, within AO353_25480at 5618.642 kb on + strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.643 kb on - strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.715 kb on + strand, within AO353_25480at 5618.716 kb on - strand, within AO353_25480at 5618.716 kb on - strand, within AO353_25480at 5618.838 kb on + strand, within AO353_25480at 5618.838 kb on + strand, within AO353_25480at 5618.839 kb on - strand, within AO353_25480at 5618.881 kb on - strand, within AO353_25480at 5618.884 kb on + strand, within AO353_25480at 5618.885 kb on - strand, within AO353_25480at 5618.990 kb on - strand, within AO353_25480at 5618.997 kb on + strand, within AO353_25480at 5618.997 kb on + strand, within AO353_25480at 5618.998 kb on - strand, within AO353_25480at 5618.998 kb on - strand, within AO353_25480at 5618.998 kb on - strand, within AO353_25480at 5619.032 kb on + strand, within AO353_25480at 5619.033 kb on - strand, within AO353_25480at 5619.033 kb on - strand, within AO353_25480at 5619.135 kb on + strandat 5619.136 kb on - strandat 5619.170 kb on + strandat 5619.287 kb on + strandat 5619.287 kb on + strandat 5619.332 kb on - strandat 5619.336 kb on - strandat 5619.365 kb on + strandat 5619.398 kb on + strandat 5619.438 kb on + strand, within AO353_25485at 5619.438 kb on + strand, within AO353_25485at 5619.438 kb on + strand, within AO353_25485at 5619.438 kb on + strand, within AO353_25485at 5619.438 kb on + strand, within AO353_25485at 5619.439 kb on - strand, within AO353_25485at 5619.439 kb on - strand, within AO353_25485at 5619.439 kb on - strand, within AO353_25485at 5619.439 kb on - strand, within AO353_25485at 5619.439 kb on - strand, within AO353_25485at 5619.579 kb on + strand, within AO353_25485at 5619.680 kb on - strand, within AO353_25485at 5619.716 kb on + strandat 5619.717 kb on - strand, within AO353_25485at 5619.731 kb on + strand, within AO353_25485at 5619.731 kb on + strand, within AO353_25485at 5619.807 kb on + strand, within AO353_25485at 5619.807 kb on + strand, within AO353_25485at 5619.894 kb on + strand, within AO353_25485at 5619.894 kb on + strand, within AO353_25485at 5619.894 kb on + strand, within AO353_25485at 5619.894 kb on + strand, within AO353_25485at 5619.895 kb on - strand, within AO353_25485at 5619.895 kb on - strand, within AO353_25485at 5619.895 kb on - strand, within AO353_25485at 5619.980 kb on + strandat 5619.980 kb on + strandat 5619.980 kb on + strandat 5619.980 kb on + strandat 5619.981 kb on - strandat 5619.981 kb on - strandat 5619.981 kb on - strandat 5620.012 kb on + strandat 5620.012 kb on + strandat 5620.013 kb on - strandat 5620.013 kb on - strandat 5620.039 kb on - strandat 5620.049 kb on + strandat 5620.062 kb on - strandat 5620.102 kb on + strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strandat 5620.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,616,849 + AO353_25475 0.18 -0.3
5,616,849 + AO353_25475 0.18 +0.9
5,616,850 - AO353_25475 0.18 -0.7
5,616,850 - AO353_25475 0.18 +1.2
5,616,850 - AO353_25475 0.18 -1.6
5,616,853 + AO353_25475 0.18 +1.4
5,616,853 + AO353_25475 0.18 -1.7
5,616,853 + AO353_25475 0.18 +0.1
5,616,853 + AO353_25475 0.18 +1.1
5,616,853 + AO353_25475 0.18 +0.1
5,616,854 - AO353_25475 0.18 +0.7
5,616,854 - AO353_25475 0.18 -0.5
5,616,854 - AO353_25475 0.18 +0.3
5,616,854 - AO353_25475 0.18 +0.9
5,617,363 + +0.1
5,617,607 + AO353_25475 0.81 -0.3
5,617,823 + +1.2
5,617,965 + -0.0
5,618,642 + AO353_25480 0.58 -2.0
5,618,642 + AO353_25480 0.58 +0.4
5,618,642 + AO353_25480 0.58 -0.0
5,618,643 - AO353_25480 0.58 +0.1
5,618,643 - AO353_25480 0.58 -1.2
5,618,643 - AO353_25480 0.58 +1.1
5,618,643 - AO353_25480 0.58 -0.2
5,618,643 - AO353_25480 0.58 -0.2
5,618,715 + AO353_25480 0.63 -1.2
5,618,715 + AO353_25480 0.63 +0.1
5,618,715 + AO353_25480 0.63 -1.3
5,618,715 + AO353_25480 0.63 +1.3
5,618,715 + AO353_25480 0.63 +1.1
5,618,715 + AO353_25480 0.63 +0.3
5,618,716 - AO353_25480 0.63 -1.5
5,618,716 - AO353_25480 0.63 +0.1
5,618,838 + AO353_25480 0.72 -1.2
5,618,838 + AO353_25480 0.72 +1.7
5,618,839 - AO353_25480 0.72 -0.3
5,618,881 - AO353_25480 0.75 +1.1
5,618,884 + AO353_25480 0.75 -0.8
5,618,885 - AO353_25480 0.75 +0.1
5,618,990 - AO353_25480 0.83 -0.3
5,618,997 + AO353_25480 0.83 +1.2
5,618,997 + AO353_25480 0.83 +7.9
5,618,998 - AO353_25480 0.83 -0.3
5,618,998 - AO353_25480 0.83 -0.3
5,618,998 - AO353_25480 0.83 -1.3
5,619,032 + AO353_25480 0.86 -0.7
5,619,033 - AO353_25480 0.86 +0.3
5,619,033 - AO353_25480 0.86 -1.8
5,619,135 + +1.3
5,619,136 - -0.2
5,619,170 + -1.8
5,619,287 + +0.7
5,619,287 + -0.7
5,619,332 - -0.8
5,619,336 - -1.7
5,619,365 + +0.4
5,619,398 + -0.7
5,619,438 + AO353_25485 0.15 +0.1
5,619,438 + AO353_25485 0.15 -0.8
5,619,438 + AO353_25485 0.15 +0.1
5,619,438 + AO353_25485 0.15 -1.2
5,619,438 + AO353_25485 0.15 -0.1
5,619,439 - AO353_25485 0.15 -0.9
5,619,439 - AO353_25485 0.15 -1.2
5,619,439 - AO353_25485 0.15 -0.5
5,619,439 - AO353_25485 0.15 +0.1
5,619,439 - AO353_25485 0.15 +1.0
5,619,579 + AO353_25485 0.36 -1.3
5,619,680 - AO353_25485 0.50 +0.7
5,619,716 + +0.3
5,619,717 - AO353_25485 0.56 +0.9
5,619,731 + AO353_25485 0.58 +0.4
5,619,731 + AO353_25485 0.58 -0.8
5,619,807 + AO353_25485 0.69 -1.5
5,619,807 + AO353_25485 0.69 -0.3
5,619,894 + AO353_25485 0.81 +0.3
5,619,894 + AO353_25485 0.81 -1.4
5,619,894 + AO353_25485 0.81 -2.0
5,619,894 + AO353_25485 0.81 -1.0
5,619,895 - AO353_25485 0.81 -0.3
5,619,895 - AO353_25485 0.81 -1.7
5,619,895 - AO353_25485 0.81 -0.3
5,619,980 + -1.6
5,619,980 + +0.1
5,619,980 + -0.7
5,619,980 + +1.2
5,619,981 - +2.2
5,619,981 - +0.4
5,619,981 - -1.3
5,620,012 + -0.9
5,620,012 + -0.9
5,620,013 - -0.9
5,620,013 - -0.9
5,620,039 - -0.9
5,620,049 + +0.2
5,620,062 - +1.2
5,620,102 + -0.3
5,620,103 - +0.7
5,620,103 - +0.1
5,620,103 - -1.2
5,620,103 - +0.1
5,620,103 - -0.9
5,620,103 - -0.5
5,620,103 - -1.5
5,620,103 - -0.7
5,620,103 - +0.7

Or see this region's nucleotide sequence