Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25475 and AO353_25480 overlap by 4 nucleotides AO353_25480 and AO353_25485 are separated by 104 nucleotides AO353_25485 and AO353_25490 are separated by 120 nucleotides
AO353_25475: AO353_25475 - multidrug resistance protein, at 5,616,639 to 5,617,832
_25475
AO353_25480: AO353_25480 - multidrug transporter, at 5,617,829 to 5,619,229
_25480
AO353_25485: AO353_25485 - XRE family transcriptional regulator, at 5,619,334 to 5,620,023
_25485
AO353_25490: AO353_25490 - transcriptional regulator, at 5,620,144 to 5,620,836
_25490
Position (kb)
5617
5618
5619
5620 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 5616.849 kb on + strand, within AO353_25475 at 5616.849 kb on + strand, within AO353_25475 at 5616.850 kb on - strand, within AO353_25475 at 5616.850 kb on - strand, within AO353_25475 at 5616.850 kb on - strand, within AO353_25475 at 5616.853 kb on + strand, within AO353_25475 at 5616.853 kb on + strand, within AO353_25475 at 5616.853 kb on + strand, within AO353_25475 at 5616.853 kb on + strand, within AO353_25475 at 5616.853 kb on + strand, within AO353_25475 at 5616.854 kb on - strand, within AO353_25475 at 5616.854 kb on - strand, within AO353_25475 at 5616.854 kb on - strand, within AO353_25475 at 5616.854 kb on - strand, within AO353_25475 at 5617.363 kb on + strand at 5617.607 kb on + strand, within AO353_25475 at 5617.823 kb on + strand at 5617.965 kb on + strand at 5618.642 kb on + strand, within AO353_25480 at 5618.642 kb on + strand, within AO353_25480 at 5618.642 kb on + strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.643 kb on - strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.715 kb on + strand, within AO353_25480 at 5618.716 kb on - strand, within AO353_25480 at 5618.716 kb on - strand, within AO353_25480 at 5618.838 kb on + strand, within AO353_25480 at 5618.838 kb on + strand, within AO353_25480 at 5618.839 kb on - strand, within AO353_25480 at 5618.881 kb on - strand, within AO353_25480 at 5618.884 kb on + strand, within AO353_25480 at 5618.885 kb on - strand, within AO353_25480 at 5618.990 kb on - strand, within AO353_25480 at 5618.997 kb on + strand, within AO353_25480 at 5618.997 kb on + strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5618.998 kb on - strand, within AO353_25480 at 5619.032 kb on + strand, within AO353_25480 at 5619.033 kb on - strand, within AO353_25480 at 5619.033 kb on - strand, within AO353_25480 at 5619.135 kb on + strand at 5619.136 kb on - strand at 5619.170 kb on + strand at 5619.287 kb on + strand at 5619.287 kb on + strand at 5619.332 kb on - strand at 5619.336 kb on - strand at 5619.365 kb on + strand at 5619.398 kb on + strand at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.438 kb on + strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.439 kb on - strand, within AO353_25485 at 5619.579 kb on + strand, within AO353_25485 at 5619.680 kb on - strand, within AO353_25485 at 5619.716 kb on + strand at 5619.717 kb on - strand, within AO353_25485 at 5619.731 kb on + strand, within AO353_25485 at 5619.731 kb on + strand, within AO353_25485 at 5619.807 kb on + strand, within AO353_25485 at 5619.807 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.894 kb on + strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.895 kb on - strand, within AO353_25485 at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.980 kb on + strand at 5619.981 kb on - strand at 5619.981 kb on - strand at 5619.981 kb on - strand at 5620.012 kb on + strand at 5620.012 kb on + strand at 5620.013 kb on - strand at 5620.013 kb on - strand at 5620.039 kb on - strand at 5620.049 kb on + strand at 5620.062 kb on - strand at 5620.102 kb on + strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand at 5620.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 5,616,849 + AO353_25475 0.18 -0.3 5,616,849 + AO353_25475 0.18 +0.9 5,616,850 - AO353_25475 0.18 -0.7 5,616,850 - AO353_25475 0.18 +1.2 5,616,850 - AO353_25475 0.18 -1.6 5,616,853 + AO353_25475 0.18 +1.4 5,616,853 + AO353_25475 0.18 -1.7 5,616,853 + AO353_25475 0.18 +0.1 5,616,853 + AO353_25475 0.18 +1.1 5,616,853 + AO353_25475 0.18 +0.1 5,616,854 - AO353_25475 0.18 +0.7 5,616,854 - AO353_25475 0.18 -0.5 5,616,854 - AO353_25475 0.18 +0.3 5,616,854 - AO353_25475 0.18 +0.9 5,617,363 + +0.1 5,617,607 + AO353_25475 0.81 -0.3 5,617,823 + +1.2 5,617,965 + -0.0 5,618,642 + AO353_25480 0.58 -2.0 5,618,642 + AO353_25480 0.58 +0.4 5,618,642 + AO353_25480 0.58 -0.0 5,618,643 - AO353_25480 0.58 +0.1 5,618,643 - AO353_25480 0.58 -1.2 5,618,643 - AO353_25480 0.58 +1.1 5,618,643 - AO353_25480 0.58 -0.2 5,618,643 - AO353_25480 0.58 -0.2 5,618,715 + AO353_25480 0.63 -1.2 5,618,715 + AO353_25480 0.63 +0.1 5,618,715 + AO353_25480 0.63 -1.3 5,618,715 + AO353_25480 0.63 +1.3 5,618,715 + AO353_25480 0.63 +1.1 5,618,715 + AO353_25480 0.63 +0.3 5,618,716 - AO353_25480 0.63 -1.5 5,618,716 - AO353_25480 0.63 +0.1 5,618,838 + AO353_25480 0.72 -1.2 5,618,838 + AO353_25480 0.72 +1.7 5,618,839 - AO353_25480 0.72 -0.3 5,618,881 - AO353_25480 0.75 +1.1 5,618,884 + AO353_25480 0.75 -0.8 5,618,885 - AO353_25480 0.75 +0.1 5,618,990 - AO353_25480 0.83 -0.3 5,618,997 + AO353_25480 0.83 +1.2 5,618,997 + AO353_25480 0.83 +7.9 5,618,998 - AO353_25480 0.83 -0.3 5,618,998 - AO353_25480 0.83 -0.3 5,618,998 - AO353_25480 0.83 -1.3 5,619,032 + AO353_25480 0.86 -0.7 5,619,033 - AO353_25480 0.86 +0.3 5,619,033 - AO353_25480 0.86 -1.8 5,619,135 + +1.3 5,619,136 - -0.2 5,619,170 + -1.8 5,619,287 + +0.7 5,619,287 + -0.7 5,619,332 - -0.8 5,619,336 - -1.7 5,619,365 + +0.4 5,619,398 + -0.7 5,619,438 + AO353_25485 0.15 +0.1 5,619,438 + AO353_25485 0.15 -0.8 5,619,438 + AO353_25485 0.15 +0.1 5,619,438 + AO353_25485 0.15 -1.2 5,619,438 + AO353_25485 0.15 -0.1 5,619,439 - AO353_25485 0.15 -0.9 5,619,439 - AO353_25485 0.15 -1.2 5,619,439 - AO353_25485 0.15 -0.5 5,619,439 - AO353_25485 0.15 +0.1 5,619,439 - AO353_25485 0.15 +1.0 5,619,579 + AO353_25485 0.36 -1.3 5,619,680 - AO353_25485 0.50 +0.7 5,619,716 + +0.3 5,619,717 - AO353_25485 0.56 +0.9 5,619,731 + AO353_25485 0.58 +0.4 5,619,731 + AO353_25485 0.58 -0.8 5,619,807 + AO353_25485 0.69 -1.5 5,619,807 + AO353_25485 0.69 -0.3 5,619,894 + AO353_25485 0.81 +0.3 5,619,894 + AO353_25485 0.81 -1.4 5,619,894 + AO353_25485 0.81 -2.0 5,619,894 + AO353_25485 0.81 -1.0 5,619,895 - AO353_25485 0.81 -0.3 5,619,895 - AO353_25485 0.81 -1.7 5,619,895 - AO353_25485 0.81 -0.3 5,619,980 + -1.6 5,619,980 + +0.1 5,619,980 + -0.7 5,619,980 + +1.2 5,619,981 - +2.2 5,619,981 - +0.4 5,619,981 - -1.3 5,620,012 + -0.9 5,620,012 + -0.9 5,620,013 - -0.9 5,620,013 - -0.9 5,620,039 - -0.9 5,620,049 + +0.2 5,620,062 - +1.2 5,620,102 + -0.3 5,620,103 - +0.7 5,620,103 - +0.1 5,620,103 - -1.2 5,620,103 - +0.1 5,620,103 - -0.9 5,620,103 - -0.5 5,620,103 - -1.5 5,620,103 - -0.7 5,620,103 - +0.7
Or see this region's nucleotide sequence