Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24925

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24920 and AO353_24925 are separated by 16 nucleotidesAO353_24925 and AO353_24930 overlap by 4 nucleotides AO353_24920: AO353_24920 - cysteine desulfurase, at 5,496,255 to 5,497,703 _24920 AO353_24925: AO353_24925 - ABC transporter ATP-binding protein, at 5,497,720 to 5,498,484 _24925 AO353_24930: AO353_24930 - Fe-S cluster assembly protein SufD, at 5,498,481 to 5,499,791 _24930 Position (kb) 5497 5498 5499Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.755 kb on + strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.756 kb on - strand, within AO353_24920at 5496.759 kb on + strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.760 kb on - strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.840 kb on + strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.841 kb on - strand, within AO353_24920at 5496.883 kb on - strand, within AO353_24920at 5496.951 kb on + strand, within AO353_24920at 5496.951 kb on + strand, within AO353_24920at 5496.960 kb on + strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.961 kb on - strand, within AO353_24920at 5496.996 kb on - strand, within AO353_24920at 5497.053 kb on + strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920at 5497.054 kb on - strand, within AO353_24920at 5497.214 kb on - strand, within AO353_24920at 5497.245 kb on + strand, within AO353_24920at 5497.245 kb on + strand, within AO353_24920at 5497.372 kb on - strand, within AO353_24920at 5497.442 kb on - strand, within AO353_24920at 5497.466 kb on + strand, within AO353_24920at 5497.466 kb on + strand, within AO353_24920at 5497.467 kb on - strand, within AO353_24920at 5497.476 kb on + strand, within AO353_24920at 5497.476 kb on + strand, within AO353_24920at 5497.476 kb on + strand, within AO353_24920at 5497.477 kb on - strand, within AO353_24920at 5497.477 kb on - strand, within AO353_24920at 5497.478 kb on + strand, within AO353_24920at 5497.478 kb on + strand, within AO353_24920at 5497.655 kb on - strandat 5497.876 kb on + strand, within AO353_24925at 5497.876 kb on + strand, within AO353_24925at 5497.876 kb on + strand, within AO353_24925at 5497.877 kb on - strand, within AO353_24925at 5497.900 kb on + strand, within AO353_24925at 5497.900 kb on + strand, within AO353_24925at 5498.005 kb on + strand, within AO353_24925at 5498.005 kb on + strand, within AO353_24925at 5498.006 kb on - strand, within AO353_24925at 5498.344 kb on + strand, within AO353_24925at 5498.344 kb on + strand, within AO353_24925at 5498.344 kb on + strand, within AO353_24925at 5498.344 kb on + strand, within AO353_24925at 5498.344 kb on + strand, within AO353_24925at 5498.345 kb on - strand, within AO353_24925at 5498.345 kb on - strand, within AO353_24925at 5498.345 kb on - strand, within AO353_24925at 5498.437 kb on + strandat 5498.446 kb on + strandat 5498.446 kb on + strandat 5498.725 kb on - strand, within AO353_24930at 5498.735 kb on - strand, within AO353_24930at 5499.102 kb on + strand, within AO353_24930at 5499.103 kb on - strand, within AO353_24930at 5499.146 kb on + strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.160 kb on - strand, within AO353_24930at 5499.362 kb on + strand, within AO353_24930at 5499.414 kb on + strand, within AO353_24930at 5499.414 kb on + strand, within AO353_24930at 5499.416 kb on + strand, within AO353_24930at 5499.416 kb on + strand, within AO353_24930at 5499.417 kb on - strand, within AO353_24930at 5499.417 kb on - strand, within AO353_24930

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,496,755 + AO353_24920 0.35 -1.2
5,496,755 + AO353_24920 0.35 +0.0
5,496,755 + AO353_24920 0.35 +0.6
5,496,755 + AO353_24920 0.35 +0.5
5,496,755 + AO353_24920 0.35 -0.8
5,496,755 + AO353_24920 0.35 -1.5
5,496,755 + AO353_24920 0.35 -0.2
5,496,755 + AO353_24920 0.35 -0.5
5,496,755 + AO353_24920 0.35 +0.3
5,496,755 + AO353_24920 0.35 +0.6
5,496,755 + AO353_24920 0.35 -0.2
5,496,756 - AO353_24920 0.35 -0.6
5,496,756 - AO353_24920 0.35 -1.7
5,496,756 - AO353_24920 0.35 -0.5
5,496,756 - AO353_24920 0.35 +0.2
5,496,756 - AO353_24920 0.35 +1.3
5,496,756 - AO353_24920 0.35 -0.2
5,496,756 - AO353_24920 0.35 -0.4
5,496,759 + AO353_24920 0.35 +0.2
5,496,760 - AO353_24920 0.35 -0.9
5,496,760 - AO353_24920 0.35 -0.8
5,496,760 - AO353_24920 0.35 +0.2
5,496,760 - AO353_24920 0.35 -1.0
5,496,840 + AO353_24920 0.40 -0.2
5,496,840 + AO353_24920 0.40 +0.9
5,496,840 + AO353_24920 0.40 -0.7
5,496,841 - AO353_24920 0.40 -1.0
5,496,841 - AO353_24920 0.40 -1.4
5,496,841 - AO353_24920 0.40 +0.2
5,496,883 - AO353_24920 0.43 -2.7
5,496,951 + AO353_24920 0.48 +1.1
5,496,951 + AO353_24920 0.48 +0.2
5,496,960 + AO353_24920 0.49 -0.8
5,496,961 - AO353_24920 0.49 +0.7
5,496,961 - AO353_24920 0.49 +0.6
5,496,961 - AO353_24920 0.49 -1.7
5,496,961 - AO353_24920 0.49 -0.6
5,496,961 - AO353_24920 0.49 -0.4
5,496,996 - AO353_24920 0.51 +0.9
5,497,053 + AO353_24920 0.55 -0.7
5,497,054 - AO353_24920 0.55 +0.6
5,497,054 - AO353_24920 0.55 +0.2
5,497,054 - AO353_24920 0.55 -1.4
5,497,214 - AO353_24920 0.66 -0.8
5,497,245 + AO353_24920 0.68 -0.4
5,497,245 + AO353_24920 0.68 -0.8
5,497,372 - AO353_24920 0.77 -0.6
5,497,442 - AO353_24920 0.82 +0.5
5,497,466 + AO353_24920 0.84 +0.4
5,497,466 + AO353_24920 0.84 +1.6
5,497,467 - AO353_24920 0.84 -0.2
5,497,476 + AO353_24920 0.84 +0.4
5,497,476 + AO353_24920 0.84 +0.1
5,497,476 + AO353_24920 0.84 +0.7
5,497,477 - AO353_24920 0.84 -1.0
5,497,477 - AO353_24920 0.84 -0.2
5,497,478 + AO353_24920 0.84 -0.7
5,497,478 + AO353_24920 0.84 +0.4
5,497,655 - -0.4
5,497,876 + AO353_24925 0.20 -1.0
5,497,876 + AO353_24925 0.20 +0.6
5,497,876 + AO353_24925 0.20 +0.6
5,497,877 - AO353_24925 0.21 +1.0
5,497,900 + AO353_24925 0.24 -0.8
5,497,900 + AO353_24925 0.24 +0.0
5,498,005 + AO353_24925 0.37 -0.7
5,498,005 + AO353_24925 0.37 +0.8
5,498,006 - AO353_24925 0.37 +3.2
5,498,344 + AO353_24925 0.82 +0.0
5,498,344 + AO353_24925 0.82 +1.2
5,498,344 + AO353_24925 0.82 +0.4
5,498,344 + AO353_24925 0.82 -1.7
5,498,344 + AO353_24925 0.82 +0.9
5,498,345 - AO353_24925 0.82 -0.2
5,498,345 - AO353_24925 0.82 -0.9
5,498,345 - AO353_24925 0.82 -2.4
5,498,437 + +0.4
5,498,446 + +0.6
5,498,446 + -1.2
5,498,725 - AO353_24930 0.19 -0.2
5,498,735 - AO353_24930 0.19 -1.4
5,499,102 + AO353_24930 0.47 -0.5
5,499,103 - AO353_24930 0.47 -0.9
5,499,146 + AO353_24930 0.51 +0.1
5,499,160 - AO353_24930 0.52 +0.0
5,499,160 - AO353_24930 0.52 -0.4
5,499,160 - AO353_24930 0.52 -0.4
5,499,362 + AO353_24930 0.67 +0.6
5,499,414 + AO353_24930 0.71 +0.2
5,499,414 + AO353_24930 0.71 -2.4
5,499,416 + AO353_24930 0.71 +0.0
5,499,416 + AO353_24930 0.71 +2.0
5,499,417 - AO353_24930 0.71 +0.5
5,499,417 - AO353_24930 0.71 -0.7

Or see this region's nucleotide sequence