Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24875 and AO353_24880 are separated by 5 nucleotides AO353_24880 and AO353_24885 are separated by 123 nucleotides AO353_24885 and AO353_24890 are separated by 236 nucleotides
AO353_24875: AO353_24875 - histidine kinase, at 5,486,531 to 5,487,358
_24875
AO353_24880: AO353_24880 - Crp/Fnr family transcriptional regulator, at 5,487,364 to 5,488,059
_24880
AO353_24885: AO353_24885 - Crp/Fnr family transcriptional regulator, at 5,488,183 to 5,488,911
_24885
AO353_24890: AO353_24890 - cardiolipin synthase, at 5,489,148 to 5,490,542
_24890
Position (kb)
5488
5489 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5487.235 kb on + strand, within AO353_24875 at 5487.236 kb on - strand, within AO353_24875 at 5487.313 kb on - strand at 5487.325 kb on + strand at 5487.325 kb on + strand at 5487.326 kb on - strand at 5487.326 kb on - strand at 5487.356 kb on + strand at 5487.367 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.392 kb on + strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.393 kb on - strand at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.668 kb on + strand, within AO353_24880 at 5487.669 kb on - strand, within AO353_24880 at 5487.669 kb on - strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.674 kb on + strand, within AO353_24880 at 5487.675 kb on - strand, within AO353_24880 at 5487.866 kb on + strand, within AO353_24880 at 5487.867 kb on - strand, within AO353_24880 at 5487.867 kb on - strand, within AO353_24880 at 5487.869 kb on - strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.908 kb on + strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.909 kb on - strand, within AO353_24880 at 5487.995 kb on + strand at 5487.995 kb on + strand at 5487.996 kb on - strand at 5488.033 kb on + strand at 5488.050 kb on + strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.051 kb on - strand at 5488.125 kb on + strand at 5488.125 kb on + strand at 5488.126 kb on - strand at 5488.126 kb on - strand at 5488.126 kb on - strand at 5488.161 kb on + strand at 5488.208 kb on + strand at 5488.208 kb on + strand at 5488.209 kb on - strand at 5488.247 kb on + strand at 5488.730 kb on + strand, within AO353_24885 at 5488.730 kb on + strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.731 kb on - strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.763 kb on + strand, within AO353_24885 at 5488.764 kb on - strand, within AO353_24885 at 5488.794 kb on - strand, within AO353_24885 at 5488.940 kb on + strand at 5488.941 kb on - strand at 5488.941 kb on - strand at 5488.946 kb on + strand at 5488.953 kb on + strand at 5488.953 kb on + strand at 5488.954 kb on - strand at 5488.954 kb on - strand at 5488.972 kb on + strand at 5488.972 kb on + strand at 5488.972 kb on + strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5488.973 kb on - strand at 5489.003 kb on + strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.004 kb on - strand at 5489.035 kb on - strand at 5489.064 kb on + strand at 5489.065 kb on - strand at 5489.070 kb on + strand at 5489.071 kb on - strand at 5489.103 kb on + strand at 5489.104 kb on - strand at 5489.194 kb on + strand at 5489.195 kb on - strand at 5489.253 kb on + strand at 5489.254 kb on - strand at 5489.286 kb on - strand at 5489.286 kb on - strand at 5489.286 kb on - strand at 5489.375 kb on + strand, within AO353_24890 at 5489.375 kb on + strand, within AO353_24890 at 5489.375 kb on + strand, within AO353_24890 at 5489.453 kb on + strand, within AO353_24890 at 5489.453 kb on + strand, within AO353_24890 at 5489.454 kb on - strand, within AO353_24890 at 5489.454 kb on - strand, within AO353_24890 at 5489.454 kb on - strand, within AO353_24890 at 5489.454 kb on - strand, within AO353_24890 at 5489.457 kb on + strand, within AO353_24890 at 5489.457 kb on + strand, within AO353_24890 at 5489.457 kb on + strand, within AO353_24890 at 5489.457 kb on + strand, within AO353_24890 at 5489.458 kb on - strand, within AO353_24890 at 5489.458 kb on - strand, within AO353_24890 at 5489.458 kb on - strand, within AO353_24890 at 5489.458 kb on - strand, within AO353_24890 at 5489.514 kb on + strand, within AO353_24890 at 5489.514 kb on + strand, within AO353_24890 at 5489.666 kb on + strand, within AO353_24890 at 5489.666 kb on + strand, within AO353_24890 at 5489.741 kb on + strand, within AO353_24890 at 5489.741 kb on + strand, within AO353_24890 at 5489.741 kb on + strand, within AO353_24890 at 5489.741 kb on + strand, within AO353_24890 at 5489.741 kb on + strand, within AO353_24890 at 5489.742 kb on - strand, within AO353_24890 at 5489.746 kb on + strand, within AO353_24890 at 5489.747 kb on - strand, within AO353_24890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 5,487,235 + AO353_24875 0.85 -2.4 5,487,236 - AO353_24875 0.85 +0.9 5,487,313 - -1.4 5,487,325 + -0.2 5,487,325 + -1.2 5,487,326 - +0.6 5,487,326 - -0.8 5,487,356 + +0.8 5,487,367 + -0.7 5,487,392 + -2.3 5,487,392 + +1.6 5,487,392 + +0.3 5,487,392 + +0.2 5,487,392 + -1.7 5,487,393 - -1.2 5,487,393 - -0.7 5,487,393 - -0.4 5,487,393 - +0.0 5,487,393 - +1.2 5,487,668 + AO353_24880 0.44 -1.2 5,487,668 + AO353_24880 0.44 -1.2 5,487,668 + AO353_24880 0.44 +0.0 5,487,668 + AO353_24880 0.44 +0.1 5,487,668 + AO353_24880 0.44 +0.3 5,487,668 + AO353_24880 0.44 -0.7 5,487,668 + AO353_24880 0.44 +0.0 5,487,669 - AO353_24880 0.44 -0.6 5,487,669 - AO353_24880 0.44 +1.4 5,487,674 + AO353_24880 0.45 -1.6 5,487,674 + AO353_24880 0.45 -1.8 5,487,674 + AO353_24880 0.45 +0.2 5,487,674 + AO353_24880 0.45 -1.2 5,487,675 - AO353_24880 0.45 +0.7 5,487,866 + AO353_24880 0.72 +0.4 5,487,867 - AO353_24880 0.72 -0.2 5,487,867 - AO353_24880 0.72 +0.0 5,487,869 - AO353_24880 0.73 -0.3 5,487,908 + AO353_24880 0.78 -1.0 5,487,908 + AO353_24880 0.78 -1.0 5,487,908 + AO353_24880 0.78 +0.0 5,487,908 + AO353_24880 0.78 +0.4 5,487,908 + AO353_24880 0.78 +1.6 5,487,908 + AO353_24880 0.78 -1.6 5,487,908 + AO353_24880 0.78 +0.2 5,487,909 - AO353_24880 0.78 -1.4 5,487,909 - AO353_24880 0.78 +0.0 5,487,909 - AO353_24880 0.78 +0.2 5,487,909 - AO353_24880 0.78 -0.9 5,487,909 - AO353_24880 0.78 -0.7 5,487,995 + -0.7 5,487,995 + -0.1 5,487,996 - -1.8 5,488,033 + -0.6 5,488,050 + +1.0 5,488,051 - -1.2 5,488,051 - +0.6 5,488,051 - -0.8 5,488,051 - -1.2 5,488,051 - -0.5 5,488,051 - -0.8 5,488,051 - +0.9 5,488,125 + -2.0 5,488,125 + +0.6 5,488,126 - -1.7 5,488,126 - +1.3 5,488,126 - +0.2 5,488,161 + +0.0 5,488,208 + -0.7 5,488,208 + -0.7 5,488,209 - +1.1 5,488,247 + +0.9 5,488,730 + AO353_24885 0.75 -0.8 5,488,730 + AO353_24885 0.75 -1.6 5,488,731 - AO353_24885 0.75 -1.2 5,488,731 - AO353_24885 0.75 -2.0 5,488,731 - AO353_24885 0.75 -1.7 5,488,763 + AO353_24885 0.80 -1.0 5,488,763 + AO353_24885 0.80 +0.4 5,488,763 + AO353_24885 0.80 -0.8 5,488,763 + AO353_24885 0.80 -0.6 5,488,763 + AO353_24885 0.80 -0.6 5,488,764 - AO353_24885 0.80 +0.0 5,488,794 - AO353_24885 0.84 -1.8 5,488,940 + +0.6 5,488,941 - -0.7 5,488,941 - -0.5 5,488,946 + -0.4 5,488,953 + +0.0 5,488,953 + -0.4 5,488,954 - -0.3 5,488,954 - +0.0 5,488,972 + +0.2 5,488,972 + +0.3 5,488,972 + -1.0 5,488,973 - +0.8 5,488,973 - -1.8 5,488,973 - -0.8 5,488,973 - -0.4 5,488,973 - -0.6 5,489,003 + +0.6 5,489,004 - +1.6 5,489,004 - -0.7 5,489,004 - -0.7 5,489,004 - -0.7 5,489,035 - +1.6 5,489,064 + +0.0 5,489,065 - -0.1 5,489,070 + -1.1 5,489,071 - +0.6 5,489,103 + -1.2 5,489,104 - +1.6 5,489,194 + -1.7 5,489,195 - -0.0 5,489,253 + -1.3 5,489,254 - -0.6 5,489,286 - -0.6 5,489,286 - -1.7 5,489,286 - -0.2 5,489,375 + AO353_24890 0.16 +0.6 5,489,375 + AO353_24890 0.16 -0.2 5,489,375 + AO353_24890 0.16 +0.0 5,489,453 + AO353_24890 0.22 -0.7 5,489,453 + AO353_24890 0.22 +0.3 5,489,454 - AO353_24890 0.22 -1.0 5,489,454 - AO353_24890 0.22 -1.0 5,489,454 - AO353_24890 0.22 -0.7 5,489,454 - AO353_24890 0.22 +1.9 5,489,457 + AO353_24890 0.22 -1.9 5,489,457 + AO353_24890 0.22 -0.4 5,489,457 + AO353_24890 0.22 -0.8 5,489,457 + AO353_24890 0.22 -1.0 5,489,458 - AO353_24890 0.22 -0.5 5,489,458 - AO353_24890 0.22 -0.6 5,489,458 - AO353_24890 0.22 +0.4 5,489,458 - AO353_24890 0.22 -0.2 5,489,514 + AO353_24890 0.26 +0.6 5,489,514 + AO353_24890 0.26 -0.2 5,489,666 + AO353_24890 0.37 +1.0 5,489,666 + AO353_24890 0.37 -1.4 5,489,741 + AO353_24890 0.43 -0.4 5,489,741 + AO353_24890 0.43 -0.1 5,489,741 + AO353_24890 0.43 -1.4 5,489,741 + AO353_24890 0.43 +0.0 5,489,741 + AO353_24890 0.43 -0.7 5,489,742 - AO353_24890 0.43 -1.1 5,489,746 + AO353_24890 0.43 -0.3 5,489,747 - AO353_24890 0.43 -0.4
Or see this region's nucleotide sequence