Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24180

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24165 and AO353_24170 are separated by 6 nucleotidesAO353_24170 and AO353_24175 are separated by 446 nucleotidesAO353_24175 and AO353_24180 are separated by 103 nucleotidesAO353_24180 and AO353_24185 are separated by 173 nucleotides AO353_24165: AO353_24165 - hypothetical protein, at 5,318,022 to 5,318,435 _24165 AO353_24170: AO353_24170 - hypothetical protein, at 5,318,442 to 5,318,651 _24170 AO353_24175: AO353_24175 - hypothetical protein, at 5,319,098 to 5,319,319 _24175 AO353_24180: AO353_24180 - transcriptional regulator, at 5,319,423 to 5,319,878 _24180 AO353_24185: AO353_24185 - serine/threonine protein phosphatase, at 5,320,052 to 5,320,783 _24185 Position (kb) 5319 5320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5318.456 kb on + strandat 5318.456 kb on + strandat 5318.456 kb on + strandat 5318.456 kb on + strandat 5318.457 kb on - strandat 5318.457 kb on - strandat 5318.457 kb on - strandat 5318.457 kb on - strandat 5318.544 kb on + strand, within AO353_24170at 5318.544 kb on + strand, within AO353_24170at 5318.545 kb on - strand, within AO353_24170at 5318.545 kb on - strand, within AO353_24170at 5318.545 kb on - strand, within AO353_24170at 5318.580 kb on + strand, within AO353_24170at 5318.580 kb on + strand, within AO353_24170at 5318.580 kb on + strand, within AO353_24170at 5318.580 kb on + strand, within AO353_24170at 5318.581 kb on - strand, within AO353_24170at 5318.581 kb on - strand, within AO353_24170at 5318.581 kb on - strand, within AO353_24170at 5318.615 kb on + strand, within AO353_24170at 5318.615 kb on + strand, within AO353_24170at 5318.616 kb on - strand, within AO353_24170at 5318.619 kb on - strand, within AO353_24170at 5318.619 kb on - strand, within AO353_24170at 5318.619 kb on - strand, within AO353_24170at 5318.619 kb on - strand, within AO353_24170at 5318.619 kb on - strand, within AO353_24170at 5318.663 kb on + strandat 5318.663 kb on + strandat 5318.663 kb on + strandat 5318.663 kb on + strandat 5318.663 kb on + strandat 5318.664 kb on - strandat 5318.706 kb on - strandat 5318.884 kb on + strandat 5318.884 kb on + strandat 5318.885 kb on - strandat 5318.885 kb on - strandat 5318.970 kb on + strandat 5319.019 kb on - strandat 5319.019 kb on - strandat 5319.019 kb on - strandat 5319.110 kb on - strandat 5319.110 kb on - strandat 5319.148 kb on + strand, within AO353_24175at 5319.149 kb on - strand, within AO353_24175at 5319.194 kb on - strand, within AO353_24175at 5319.236 kb on + strand, within AO353_24175at 5319.236 kb on + strand, within AO353_24175at 5319.236 kb on + strand, within AO353_24175at 5319.236 kb on + strand, within AO353_24175at 5319.237 kb on - strand, within AO353_24175at 5319.237 kb on - strand, within AO353_24175at 5319.277 kb on - strand, within AO353_24175at 5319.290 kb on + strand, within AO353_24175at 5319.291 kb on - strand, within AO353_24175at 5319.306 kb on + strandat 5319.352 kb on + strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.353 kb on - strandat 5319.362 kb on + strandat 5319.366 kb on + strandat 5319.366 kb on + strandat 5319.366 kb on + strandat 5319.367 kb on - strandat 5319.367 kb on - strandat 5319.367 kb on - strandat 5319.396 kb on + strandat 5319.396 kb on + strandat 5319.396 kb on + strandat 5319.397 kb on - strandat 5319.397 kb on - strandat 5319.397 kb on - strandat 5319.507 kb on + strand, within AO353_24180at 5319.508 kb on - strand, within AO353_24180at 5319.508 kb on - strand, within AO353_24180at 5319.508 kb on - strand, within AO353_24180at 5319.552 kb on - strand, within AO353_24180at 5319.777 kb on + strand, within AO353_24180at 5319.777 kb on + strand, within AO353_24180at 5319.777 kb on + strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.778 kb on - strand, within AO353_24180at 5319.905 kb on + strandat 5319.905 kb on + strandat 5319.905 kb on + strandat 5319.906 kb on - strandat 5319.906 kb on - strandat 5319.906 kb on - strandat 5319.906 kb on - strandat 5320.008 kb on + strandat 5320.008 kb on + strandat 5320.008 kb on + strandat 5320.009 kb on - strandat 5320.025 kb on + strandat 5320.026 kb on - strandat 5320.031 kb on + strandat 5320.032 kb on - strandat 5320.047 kb on + strandat 5320.047 kb on + strandat 5320.048 kb on - strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.061 kb on + strandat 5320.118 kb on + strandat 5320.119 kb on - strandat 5320.119 kb on - strandat 5320.119 kb on - strandat 5320.119 kb on - strandat 5320.125 kb on + strandat 5320.125 kb on + strandat 5320.125 kb on + strandat 5320.126 kb on - strand, within AO353_24185at 5320.126 kb on - strand, within AO353_24185at 5320.126 kb on - strand, within AO353_24185at 5320.144 kb on + strand, within AO353_24185at 5320.145 kb on - strand, within AO353_24185at 5320.185 kb on + strand, within AO353_24185at 5320.186 kb on - strand, within AO353_24185at 5320.186 kb on - strand, within AO353_24185at 5320.186 kb on - strand, within AO353_24185at 5320.205 kb on + strand, within AO353_24185at 5320.205 kb on + strand, within AO353_24185at 5320.205 kb on + strand, within AO353_24185at 5320.206 kb on - strand, within AO353_24185at 5320.229 kb on + strand, within AO353_24185at 5320.230 kb on - strand, within AO353_24185at 5320.230 kb on - strand, within AO353_24185at 5320.296 kb on + strand, within AO353_24185at 5320.360 kb on + strand, within AO353_24185at 5320.360 kb on + strand, within AO353_24185at 5320.360 kb on + strand, within AO353_24185at 5320.360 kb on + strand, within AO353_24185at 5320.446 kb on - strand, within AO353_24185at 5320.669 kb on + strand, within AO353_24185at 5320.669 kb on + strand, within AO353_24185at 5320.670 kb on - strand, within AO353_24185at 5320.781 kb on + strandat 5320.781 kb on + strandat 5320.781 kb on + strandat 5320.781 kb on + strandat 5320.782 kb on - strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.785 kb on + strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.786 kb on - strandat 5320.840 kb on + strandat 5320.840 kb on + strandat 5320.840 kb on + strandat 5320.866 kb on + strandat 5320.878 kb on + strandat 5320.878 kb on + strandat 5320.878 kb on + strandat 5320.878 kb on + strandat 5320.878 kb on + strandat 5320.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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5,318,456 + +0.3
5,318,456 + -1.1
5,318,456 + -1.7
5,318,456 + -1.7
5,318,457 - -1.8
5,318,457 - +0.1
5,318,457 - +2.0
5,318,457 - -0.0
5,318,544 + AO353_24170 0.49 -1.1
5,318,544 + AO353_24170 0.49 +1.1
5,318,545 - AO353_24170 0.49 -1.3
5,318,545 - AO353_24170 0.49 -1.5
5,318,545 - AO353_24170 0.49 +0.7
5,318,580 + AO353_24170 0.66 +0.1
5,318,580 + AO353_24170 0.66 -0.1
5,318,580 + AO353_24170 0.66 -0.1
5,318,580 + AO353_24170 0.66 -0.7
5,318,581 - AO353_24170 0.66 +0.1
5,318,581 - AO353_24170 0.66 +0.7
5,318,581 - AO353_24170 0.66 +0.9
5,318,615 + AO353_24170 0.82 -0.7
5,318,615 + AO353_24170 0.82 -0.5
5,318,616 - AO353_24170 0.83 +1.7
5,318,619 - AO353_24170 0.84 -0.9
5,318,619 - AO353_24170 0.84 +0.8
5,318,619 - AO353_24170 0.84 +2.1
5,318,619 - AO353_24170 0.84 -0.2
5,318,619 - AO353_24170 0.84 -1.3
5,318,663 + +2.7
5,318,663 + +0.3
5,318,663 + -0.3
5,318,663 + +0.9
5,318,663 + +1.7
5,318,664 - -1.1
5,318,706 - +1.7
5,318,884 + -1.3
5,318,884 + +0.3
5,318,885 - +0.3
5,318,885 - -1.1
5,318,970 + -0.1
5,319,019 - -1.2
5,319,019 - +0.1
5,319,019 - -1.5
5,319,110 - +0.1
5,319,110 - +1.0
5,319,148 + AO353_24175 0.23 +2.1
5,319,149 - AO353_24175 0.23 -0.3
5,319,194 - AO353_24175 0.43 +0.5
5,319,236 + AO353_24175 0.62 +5.5
5,319,236 + AO353_24175 0.62 +0.7
5,319,236 + AO353_24175 0.62 -3.0
5,319,236 + AO353_24175 0.62 +0.1
5,319,237 - AO353_24175 0.63 -0.7
5,319,237 - AO353_24175 0.63 -1.0
5,319,277 - AO353_24175 0.81 -2.2
5,319,290 + AO353_24175 0.86 +0.3
5,319,291 - AO353_24175 0.87 -0.0
5,319,306 + +0.3
5,319,352 + -0.3
5,319,353 - -1.1
5,319,353 - +0.3
5,319,353 - +0.7
5,319,353 - +1.7
5,319,353 - -0.7
5,319,353 - -1.0
5,319,353 - -0.8
5,319,362 + +0.7
5,319,366 + -0.1
5,319,366 + +1.4
5,319,366 + -0.6
5,319,367 - -1.3
5,319,367 - -0.9
5,319,367 - +1.9
5,319,396 + -0.4
5,319,396 + +1.1
5,319,396 + -0.4
5,319,397 - -1.4
5,319,397 - +0.2
5,319,397 - -0.2
5,319,507 + AO353_24180 0.18 -0.9
5,319,508 - AO353_24180 0.19 -1.2
5,319,508 - AO353_24180 0.19 -1.8
5,319,508 - AO353_24180 0.19 -1.1
5,319,552 - AO353_24180 0.28 -0.7
5,319,777 + AO353_24180 0.78 -0.9
5,319,777 + AO353_24180 0.78 -1.0
5,319,777 + AO353_24180 0.78 -1.2
5,319,778 - AO353_24180 0.78 -0.1
5,319,778 - AO353_24180 0.78 +0.5
5,319,778 - AO353_24180 0.78 +0.1
5,319,778 - AO353_24180 0.78 -2.0
5,319,778 - AO353_24180 0.78 +0.3
5,319,778 - AO353_24180 0.78 -2.1
5,319,778 - AO353_24180 0.78 +1.1
5,319,778 - AO353_24180 0.78 -1.1
5,319,778 - AO353_24180 0.78 -1.5
5,319,905 + -1.1
5,319,905 + +0.6
5,319,905 + +0.7
5,319,906 - -0.9
5,319,906 - +0.3
5,319,906 - -0.5
5,319,906 - -0.7
5,320,008 + +0.3
5,320,008 + +0.9
5,320,008 + -0.3
5,320,009 - +0.1
5,320,025 + +0.4
5,320,026 - -0.3
5,320,031 + -0.9
5,320,032 - -0.1
5,320,047 + -0.5
5,320,047 + -0.3
5,320,048 - -0.9
5,320,061 + -0.7
5,320,061 + +0.0
5,320,061 + -0.7
5,320,061 + -1.1
5,320,061 + +0.1
5,320,061 + +0.7
5,320,061 + +0.3
5,320,118 + -0.1
5,320,119 - +1.5
5,320,119 - -1.1
5,320,119 - -0.7
5,320,119 - -0.3
5,320,125 + -0.4
5,320,125 + +0.7
5,320,125 + +0.7
5,320,126 - AO353_24185 0.10 -0.4
5,320,126 - AO353_24185 0.10 -0.7
5,320,126 - AO353_24185 0.10 -0.8
5,320,144 + AO353_24185 0.13 +1.3
5,320,145 - AO353_24185 0.13 +1.7
5,320,185 + AO353_24185 0.18 -0.7
5,320,186 - AO353_24185 0.18 +0.1
5,320,186 - AO353_24185 0.18 +1.3
5,320,186 - AO353_24185 0.18 -0.7
5,320,205 + AO353_24185 0.21 -1.8
5,320,205 + AO353_24185 0.21 -0.9
5,320,205 + AO353_24185 0.21 -0.3
5,320,206 - AO353_24185 0.21 +0.9
5,320,229 + AO353_24185 0.24 -1.9
5,320,230 - AO353_24185 0.24 +0.7
5,320,230 - AO353_24185 0.24 -0.5
5,320,296 + AO353_24185 0.33 -0.4
5,320,360 + AO353_24185 0.42 -0.5
5,320,360 + AO353_24185 0.42 +0.4
5,320,360 + AO353_24185 0.42 -0.3
5,320,360 + AO353_24185 0.42 +0.8
5,320,446 - AO353_24185 0.54 -0.7
5,320,669 + AO353_24185 0.84 +0.3
5,320,669 + AO353_24185 0.84 -1.5
5,320,670 - AO353_24185 0.84 +1.1
5,320,781 + +0.2
5,320,781 + -1.2
5,320,781 + +1.3
5,320,781 + -0.9
5,320,782 - +0.3
5,320,785 + -1.1
5,320,785 + -2.0
5,320,785 + -0.8
5,320,785 + -0.1
5,320,785 + +0.1
5,320,785 + +1.1
5,320,785 + -1.1
5,320,785 + +0.4
5,320,786 - +0.5
5,320,786 - +0.7
5,320,786 - -0.6
5,320,786 - +0.1
5,320,786 - -3.1
5,320,786 - +2.7
5,320,786 - -0.1
5,320,786 - -1.5
5,320,840 + -0.9
5,320,840 + -1.7
5,320,840 + +0.1
5,320,866 + -1.0
5,320,878 + -0.3
5,320,878 + -0.7
5,320,878 + -1.6
5,320,878 + -2.6
5,320,878 + -1.1
5,320,878 + -0.8

Or see this region's nucleotide sequence