Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21770

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21765 and AO353_21770 are separated by 199 nucleotidesAO353_21770 and AO353_21775 are separated by 7 nucleotides AO353_21765: AO353_21765 - acetoacetyl-CoA synthetase, at 4,771,305 to 4,773,260 _21765 AO353_21770: AO353_21770 - 3-hydroxybutyrate dehydrogenase, at 4,773,460 to 4,774,233 _21770 AO353_21775: AO353_21775 - transporter, at 4,774,241 to 4,775,632 _21775 Position (kb) 4773 4774 4775Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4772.512 kb on + strand, within AO353_21765at 4772.551 kb on + strand, within AO353_21765at 4772.551 kb on + strand, within AO353_21765at 4772.582 kb on - strand, within AO353_21765at 4772.582 kb on - strand, within AO353_21765at 4772.668 kb on + strand, within AO353_21765at 4773.081 kb on + strandat 4773.155 kb on - strandat 4773.176 kb on - strandat 4773.176 kb on - strandat 4773.281 kb on - strandat 4773.283 kb on + strandat 4773.283 kb on + strandat 4773.283 kb on + strandat 4773.283 kb on + strandat 4773.389 kb on - strandat 4773.454 kb on - strandat 4773.461 kb on + strandat 4773.486 kb on + strandat 4773.700 kb on - strand, within AO353_21770at 4773.776 kb on + strand, within AO353_21770at 4773.776 kb on + strand, within AO353_21770at 4773.811 kb on + strand, within AO353_21770at 4773.812 kb on - strand, within AO353_21770at 4774.014 kb on - strand, within AO353_21770at 4774.014 kb on - strand, within AO353_21770at 4774.260 kb on + strandat 4774.260 kb on + strandat 4774.261 kb on - strandat 4774.261 kb on - strandat 4774.267 kb on + strandat 4774.267 kb on + strandat 4774.267 kb on + strandat 4774.267 kb on + strandat 4774.267 kb on + strandat 4774.268 kb on - strandat 4774.277 kb on + strandat 4774.278 kb on - strandat 4774.278 kb on - strandat 4774.306 kb on + strandat 4774.306 kb on + strandat 4774.307 kb on - strandat 4774.307 kb on - strandat 4774.307 kb on - strandat 4774.309 kb on + strandat 4774.310 kb on - strandat 4774.324 kb on + strandat 4774.324 kb on + strandat 4774.326 kb on + strandat 4774.327 kb on - strandat 4774.327 kb on - strandat 4774.327 kb on - strandat 4774.327 kb on - strandat 4774.366 kb on + strandat 4774.366 kb on + strandat 4774.366 kb on + strandat 4774.366 kb on + strandat 4774.367 kb on - strandat 4774.647 kb on + strand, within AO353_21775at 4774.648 kb on - strand, within AO353_21775at 4774.946 kb on - strand, within AO353_21775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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4,772,512 + AO353_21765 0.62 -0.3
4,772,551 + AO353_21765 0.64 +1.5
4,772,551 + AO353_21765 0.64 +1.4
4,772,582 - AO353_21765 0.65 -1.0
4,772,582 - AO353_21765 0.65 +0.2
4,772,668 + AO353_21765 0.70 -1.9
4,773,081 + -2.1
4,773,155 - -1.2
4,773,176 - -0.8
4,773,176 - -0.6
4,773,281 - +1.0
4,773,283 + -1.0
4,773,283 + +0.1
4,773,283 + +0.4
4,773,283 + -1.2
4,773,389 - +1.8
4,773,454 - -1.0
4,773,461 + +1.1
4,773,486 + -0.8
4,773,700 - AO353_21770 0.31 +0.2
4,773,776 + AO353_21770 0.41 -0.3
4,773,776 + AO353_21770 0.41 -0.6
4,773,811 + AO353_21770 0.45 -0.1
4,773,812 - AO353_21770 0.45 -1.2
4,774,014 - AO353_21770 0.72 -1.8
4,774,014 - AO353_21770 0.72 -1.5
4,774,260 + +0.3
4,774,260 + -0.8
4,774,261 - -0.6
4,774,261 - -0.9
4,774,267 + +0.8
4,774,267 + +0.2
4,774,267 + +0.2
4,774,267 + -1.2
4,774,267 + -1.3
4,774,268 - -1.8
4,774,277 + +0.1
4,774,278 - -1.9
4,774,278 - -0.5
4,774,306 + -0.4
4,774,306 + +0.1
4,774,307 - -0.3
4,774,307 - +0.2
4,774,307 - +0.3
4,774,309 + -0.2
4,774,310 - +1.0
4,774,324 + +0.5
4,774,324 + +2.8
4,774,326 + -0.2
4,774,327 - -0.3
4,774,327 - +0.5
4,774,327 - -0.6
4,774,327 - +0.2
4,774,366 + +0.8
4,774,366 + -0.2
4,774,366 + +2.2
4,774,366 + +0.7
4,774,367 - -0.3
4,774,647 + AO353_21775 0.29 -0.5
4,774,648 - AO353_21775 0.29 -1.6
4,774,946 - AO353_21775 0.51 +1.2

Or see this region's nucleotide sequence