Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21765 and AO353_21770 are separated by 199 nucleotides AO353_21770 and AO353_21775 are separated by 7 nucleotides
AO353_21765: AO353_21765 - acetoacetyl-CoA synthetase, at 4,771,305 to 4,773,260
_21765
AO353_21770: AO353_21770 - 3-hydroxybutyrate dehydrogenase, at 4,773,460 to 4,774,233
_21770
AO353_21775: AO353_21775 - transporter, at 4,774,241 to 4,775,632
_21775
Position (kb)
4773
4774
4775 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4772.512 kb on + strand, within AO353_21765 at 4772.551 kb on + strand, within AO353_21765 at 4772.551 kb on + strand, within AO353_21765 at 4772.582 kb on - strand, within AO353_21765 at 4772.582 kb on - strand, within AO353_21765 at 4772.668 kb on + strand, within AO353_21765 at 4773.081 kb on + strand at 4773.155 kb on - strand at 4773.176 kb on - strand at 4773.176 kb on - strand at 4773.281 kb on - strand at 4773.283 kb on + strand at 4773.283 kb on + strand at 4773.283 kb on + strand at 4773.283 kb on + strand at 4773.389 kb on - strand at 4773.454 kb on - strand at 4773.461 kb on + strand at 4773.486 kb on + strand at 4773.700 kb on - strand, within AO353_21770 at 4773.776 kb on + strand, within AO353_21770 at 4773.776 kb on + strand, within AO353_21770 at 4773.811 kb on + strand, within AO353_21770 at 4773.812 kb on - strand, within AO353_21770 at 4774.014 kb on - strand, within AO353_21770 at 4774.014 kb on - strand, within AO353_21770 at 4774.260 kb on + strand at 4774.260 kb on + strand at 4774.261 kb on - strand at 4774.261 kb on - strand at 4774.267 kb on + strand at 4774.267 kb on + strand at 4774.267 kb on + strand at 4774.267 kb on + strand at 4774.267 kb on + strand at 4774.268 kb on - strand at 4774.277 kb on + strand at 4774.278 kb on - strand at 4774.278 kb on - strand at 4774.306 kb on + strand at 4774.306 kb on + strand at 4774.307 kb on - strand at 4774.307 kb on - strand at 4774.307 kb on - strand at 4774.309 kb on + strand at 4774.310 kb on - strand at 4774.324 kb on + strand at 4774.324 kb on + strand at 4774.326 kb on + strand at 4774.327 kb on - strand at 4774.327 kb on - strand at 4774.327 kb on - strand at 4774.327 kb on - strand at 4774.366 kb on + strand at 4774.366 kb on + strand at 4774.366 kb on + strand at 4774.366 kb on + strand at 4774.367 kb on - strand at 4774.647 kb on + strand, within AO353_21775 at 4774.648 kb on - strand, within AO353_21775 at 4774.946 kb on - strand, within AO353_21775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,772,512 + AO353_21765 0.62 -0.3 4,772,551 + AO353_21765 0.64 +1.5 4,772,551 + AO353_21765 0.64 +1.4 4,772,582 - AO353_21765 0.65 -1.0 4,772,582 - AO353_21765 0.65 +0.2 4,772,668 + AO353_21765 0.70 -1.9 4,773,081 + -2.1 4,773,155 - -1.2 4,773,176 - -0.8 4,773,176 - -0.6 4,773,281 - +1.0 4,773,283 + -1.0 4,773,283 + +0.1 4,773,283 + +0.4 4,773,283 + -1.2 4,773,389 - +1.8 4,773,454 - -1.0 4,773,461 + +1.1 4,773,486 + -0.8 4,773,700 - AO353_21770 0.31 +0.2 4,773,776 + AO353_21770 0.41 -0.3 4,773,776 + AO353_21770 0.41 -0.6 4,773,811 + AO353_21770 0.45 -0.1 4,773,812 - AO353_21770 0.45 -1.2 4,774,014 - AO353_21770 0.72 -1.8 4,774,014 - AO353_21770 0.72 -1.5 4,774,260 + +0.3 4,774,260 + -0.8 4,774,261 - -0.6 4,774,261 - -0.9 4,774,267 + +0.8 4,774,267 + +0.2 4,774,267 + +0.2 4,774,267 + -1.2 4,774,267 + -1.3 4,774,268 - -1.8 4,774,277 + +0.1 4,774,278 - -1.9 4,774,278 - -0.5 4,774,306 + -0.4 4,774,306 + +0.1 4,774,307 - -0.3 4,774,307 - +0.2 4,774,307 - +0.3 4,774,309 + -0.2 4,774,310 - +1.0 4,774,324 + +0.5 4,774,324 + +2.8 4,774,326 + -0.2 4,774,327 - -0.3 4,774,327 - +0.5 4,774,327 - -0.6 4,774,327 - +0.2 4,774,366 + +0.8 4,774,366 + -0.2 4,774,366 + +2.2 4,774,366 + +0.7 4,774,367 - -0.3 4,774,647 + AO353_21775 0.29 -0.5 4,774,648 - AO353_21775 0.29 -1.6 4,774,946 - AO353_21775 0.51 +1.2
Or see this region's nucleotide sequence