Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21585

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21580 and AO353_21585 are separated by 15 nucleotidesAO353_21585 and AO353_21590 are separated by 217 nucleotides AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871 _21580 AO353_21585: AO353_21585 - hydroxyacid dehydrogenase, at 4,726,887 to 4,727,837 _21585 AO353_21590: AO353_21590 - isochorismatase, at 4,728,055 to 4,728,579 _21590 Position (kb) 4726 4727 4728Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.479 kb on + strand, within AO353_21580at 4726.480 kb on - strand, within AO353_21580at 4726.503 kb on + strand, within AO353_21580at 4726.504 kb on - strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.755 kb on + strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.756 kb on - strand, within AO353_21580at 4726.787 kb on + strandat 4726.869 kb on + strandat 4726.870 kb on - strandat 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.035 kb on - strand, within AO353_21585at 4727.073 kb on + strand, within AO353_21585at 4727.165 kb on + strand, within AO353_21585at 4727.330 kb on - strand, within AO353_21585at 4727.565 kb on + strand, within AO353_21585at 4727.566 kb on - strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.665 kb on + strand, within AO353_21585at 4727.666 kb on - strand, within AO353_21585at 4727.666 kb on - strand, within AO353_21585at 4727.794 kb on + strandat 4727.794 kb on + strandat 4727.794 kb on + strandat 4727.795 kb on - strandat 4727.795 kb on - strandat 4727.823 kb on + strandat 4727.850 kb on + strandat 4727.850 kb on + strandat 4727.850 kb on + strandat 4727.863 kb on - strandat 4727.883 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.926 kb on + strandat 4727.927 kb on - strandat 4727.927 kb on - strandat 4727.983 kb on + strandat 4728.020 kb on + strandat 4728.020 kb on + strandat 4728.020 kb on + strandat 4728.020 kb on + strandat 4728.020 kb on + strandat 4728.020 kb on + strandat 4728.021 kb on - strandat 4728.021 kb on - strandat 4728.032 kb on + strandat 4728.033 kb on - strandat 4728.193 kb on + strand, within AO353_21590at 4728.193 kb on + strand, within AO353_21590at 4728.194 kb on - strand, within AO353_21590at 4728.222 kb on + strand, within AO353_21590at 4728.223 kb on - strand, within AO353_21590at 4728.237 kb on - strand, within AO353_21590at 4728.237 kb on - strand, within AO353_21590at 4728.379 kb on + strand, within AO353_21590at 4728.379 kb on + strand, within AO353_21590at 4728.379 kb on + strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.380 kb on - strand, within AO353_21590at 4728.443 kb on + strand, within AO353_21590at 4728.443 kb on + strand, within AO353_21590at 4728.444 kb on - strand, within AO353_21590at 4728.444 kb on - strand, within AO353_21590at 4728.444 kb on - strand, within AO353_21590at 4728.499 kb on + strand, within AO353_21590at 4728.499 kb on + strand, within AO353_21590at 4728.500 kb on - strand, within AO353_21590at 4728.500 kb on - strand, within AO353_21590at 4728.533 kb on + strandat 4728.534 kb on - strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.579 kb on + strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.580 kb on - strandat 4728.666 kb on + strandat 4728.666 kb on + strandat 4728.666 kb on + strandat 4728.666 kb on + strandat 4728.666 kb on + strandat 4728.667 kb on - strandat 4728.667 kb on - strandat 4728.670 kb on + strandat 4728.671 kb on - strandat 4728.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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4,726,479 + AO353_21580 0.64 -0.2
4,726,479 + AO353_21580 0.64 -0.2
4,726,479 + AO353_21580 0.64 -1.0
4,726,479 + AO353_21580 0.64 +1.2
4,726,480 - AO353_21580 0.64 -0.7
4,726,503 + AO353_21580 0.66 -0.8
4,726,504 - AO353_21580 0.67 +0.3
4,726,755 + AO353_21580 0.89 -0.2
4,726,755 + AO353_21580 0.89 +1.8
4,726,755 + AO353_21580 0.89 +0.5
4,726,755 + AO353_21580 0.89 -1.1
4,726,756 - AO353_21580 0.89 -0.0
4,726,756 - AO353_21580 0.89 +0.2
4,726,756 - AO353_21580 0.89 -1.2
4,726,756 - AO353_21580 0.89 -0.5
4,726,756 - AO353_21580 0.89 -1.0
4,726,756 - AO353_21580 0.89 +0.3
4,726,787 + -1.2
4,726,869 + -1.2
4,726,870 - -0.0
4,727,035 - AO353_21585 0.16 +1.8
4,727,035 - AO353_21585 0.16 +1.0
4,727,035 - AO353_21585 0.16 -0.5
4,727,035 - AO353_21585 0.16 -0.3
4,727,073 + AO353_21585 0.20 -1.7
4,727,165 + AO353_21585 0.29 +0.4
4,727,330 - AO353_21585 0.47 -0.5
4,727,565 + AO353_21585 0.71 -0.0
4,727,566 - AO353_21585 0.71 +1.8
4,727,665 + AO353_21585 0.82 +0.3
4,727,665 + AO353_21585 0.82 -0.8
4,727,665 + AO353_21585 0.82 -1.0
4,727,665 + AO353_21585 0.82 -0.5
4,727,666 - AO353_21585 0.82 -0.2
4,727,666 - AO353_21585 0.82 +1.5
4,727,794 + -0.5
4,727,794 + -1.0
4,727,794 + -0.2
4,727,795 - -0.3
4,727,795 - +1.5
4,727,823 + +0.2
4,727,850 + +1.1
4,727,850 + -1.5
4,727,850 + +0.3
4,727,863 - +0.7
4,727,883 + -0.2
4,727,926 + -1.1
4,727,926 + +0.6
4,727,926 + -0.5
4,727,926 + -1.3
4,727,926 + -0.7
4,727,926 + -1.0
4,727,926 + +0.7
4,727,926 + -1.7
4,727,926 + -0.5
4,727,927 - -0.2
4,727,927 - +0.6
4,727,983 + -1.3
4,728,020 + -0.7
4,728,020 + -0.6
4,728,020 + +1.2
4,728,020 + -1.0
4,728,020 + +0.8
4,728,020 + +0.1
4,728,021 - +0.6
4,728,021 - +1.5
4,728,032 + -0.6
4,728,033 - -1.9
4,728,193 + AO353_21590 0.26 -2.3
4,728,193 + AO353_21590 0.26 -1.3
4,728,194 - AO353_21590 0.26 -0.6
4,728,222 + AO353_21590 0.32 -0.4
4,728,223 - AO353_21590 0.32 -0.7
4,728,237 - AO353_21590 0.35 -2.3
4,728,237 - AO353_21590 0.35 -1.1
4,728,379 + AO353_21590 0.62 +0.5
4,728,379 + AO353_21590 0.62 -1.3
4,728,379 + AO353_21590 0.62 +1.2
4,728,380 - AO353_21590 0.62 -0.2
4,728,380 - AO353_21590 0.62 -0.2
4,728,380 - AO353_21590 0.62 -0.2
4,728,380 - AO353_21590 0.62 -0.7
4,728,380 - AO353_21590 0.62 +0.4
4,728,380 - AO353_21590 0.62 -0.5
4,728,443 + AO353_21590 0.74 -0.7
4,728,443 + AO353_21590 0.74 +1.3
4,728,444 - AO353_21590 0.74 +0.7
4,728,444 - AO353_21590 0.74 -0.2
4,728,444 - AO353_21590 0.74 -1.0
4,728,499 + AO353_21590 0.85 +0.1
4,728,499 + AO353_21590 0.85 -2.0
4,728,500 - AO353_21590 0.85 +0.3
4,728,500 - AO353_21590 0.85 -1.0
4,728,533 + +1.4
4,728,534 - -1.6
4,728,579 + -0.3
4,728,579 + -0.9
4,728,579 + +0.2
4,728,579 + -0.7
4,728,579 + -0.5
4,728,579 + -0.2
4,728,579 + +0.5
4,728,579 + -0.5
4,728,580 - -0.4
4,728,580 - -0.6
4,728,580 - +0.8
4,728,580 - +1.0
4,728,580 - +2.8
4,728,580 - +1.8
4,728,580 - +2.1
4,728,666 + +0.0
4,728,666 + +0.2
4,728,666 + +1.6
4,728,666 + -1.0
4,728,666 + -1.6
4,728,667 - +1.3
4,728,667 - -0.2
4,728,670 + -0.6
4,728,671 - +5.6
4,728,671 - -1.7

Or see this region's nucleotide sequence