Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21580 and AO353_21585 are separated by 15 nucleotides AO353_21585 and AO353_21590 are separated by 217 nucleotides
AO353_21580: AO353_21580 - type VI secretion protein, at 4,725,771 to 4,726,871
_21580
AO353_21585: AO353_21585 - hydroxyacid dehydrogenase, at 4,726,887 to 4,727,837
_21585
AO353_21590: AO353_21590 - isochorismatase, at 4,728,055 to 4,728,579
_21590
Position (kb)
4726
4727
4728 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.479 kb on + strand, within AO353_21580 at 4726.480 kb on - strand, within AO353_21580 at 4726.503 kb on + strand, within AO353_21580 at 4726.504 kb on - strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.755 kb on + strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.756 kb on - strand, within AO353_21580 at 4726.787 kb on + strand at 4726.869 kb on + strand at 4726.870 kb on - strand at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.035 kb on - strand, within AO353_21585 at 4727.073 kb on + strand, within AO353_21585 at 4727.165 kb on + strand, within AO353_21585 at 4727.330 kb on - strand, within AO353_21585 at 4727.565 kb on + strand, within AO353_21585 at 4727.566 kb on - strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.665 kb on + strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.666 kb on - strand, within AO353_21585 at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.794 kb on + strand at 4727.795 kb on - strand at 4727.795 kb on - strand at 4727.823 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.850 kb on + strand at 4727.863 kb on - strand at 4727.883 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.926 kb on + strand at 4727.927 kb on - strand at 4727.927 kb on - strand at 4727.983 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.020 kb on + strand at 4728.021 kb on - strand at 4728.021 kb on - strand at 4728.032 kb on + strand at 4728.033 kb on - strand at 4728.193 kb on + strand, within AO353_21590 at 4728.193 kb on + strand, within AO353_21590 at 4728.194 kb on - strand, within AO353_21590 at 4728.222 kb on + strand, within AO353_21590 at 4728.223 kb on - strand, within AO353_21590 at 4728.237 kb on - strand, within AO353_21590 at 4728.237 kb on - strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.379 kb on + strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.380 kb on - strand, within AO353_21590 at 4728.443 kb on + strand, within AO353_21590 at 4728.443 kb on + strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.444 kb on - strand, within AO353_21590 at 4728.499 kb on + strand, within AO353_21590 at 4728.499 kb on + strand, within AO353_21590 at 4728.500 kb on - strand, within AO353_21590 at 4728.500 kb on - strand, within AO353_21590 at 4728.533 kb on + strand at 4728.534 kb on - strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.579 kb on + strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.580 kb on - strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.666 kb on + strand at 4728.667 kb on - strand at 4728.667 kb on - strand at 4728.670 kb on + strand at 4728.671 kb on - strand at 4728.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,726,479 + AO353_21580 0.64 -0.2 4,726,479 + AO353_21580 0.64 -0.2 4,726,479 + AO353_21580 0.64 -1.0 4,726,479 + AO353_21580 0.64 +1.2 4,726,480 - AO353_21580 0.64 -0.7 4,726,503 + AO353_21580 0.66 -0.8 4,726,504 - AO353_21580 0.67 +0.3 4,726,755 + AO353_21580 0.89 -0.2 4,726,755 + AO353_21580 0.89 +1.8 4,726,755 + AO353_21580 0.89 +0.5 4,726,755 + AO353_21580 0.89 -1.1 4,726,756 - AO353_21580 0.89 -0.0 4,726,756 - AO353_21580 0.89 +0.2 4,726,756 - AO353_21580 0.89 -1.2 4,726,756 - AO353_21580 0.89 -0.5 4,726,756 - AO353_21580 0.89 -1.0 4,726,756 - AO353_21580 0.89 +0.3 4,726,787 + -1.2 4,726,869 + -1.2 4,726,870 - -0.0 4,727,035 - AO353_21585 0.16 +1.8 4,727,035 - AO353_21585 0.16 +1.0 4,727,035 - AO353_21585 0.16 -0.5 4,727,035 - AO353_21585 0.16 -0.3 4,727,073 + AO353_21585 0.20 -1.7 4,727,165 + AO353_21585 0.29 +0.4 4,727,330 - AO353_21585 0.47 -0.5 4,727,565 + AO353_21585 0.71 -0.0 4,727,566 - AO353_21585 0.71 +1.8 4,727,665 + AO353_21585 0.82 +0.3 4,727,665 + AO353_21585 0.82 -0.8 4,727,665 + AO353_21585 0.82 -1.0 4,727,665 + AO353_21585 0.82 -0.5 4,727,666 - AO353_21585 0.82 -0.2 4,727,666 - AO353_21585 0.82 +1.5 4,727,794 + -0.5 4,727,794 + -1.0 4,727,794 + -0.2 4,727,795 - -0.3 4,727,795 - +1.5 4,727,823 + +0.2 4,727,850 + +1.1 4,727,850 + -1.5 4,727,850 + +0.3 4,727,863 - +0.7 4,727,883 + -0.2 4,727,926 + -1.1 4,727,926 + +0.6 4,727,926 + -0.5 4,727,926 + -1.3 4,727,926 + -0.7 4,727,926 + -1.0 4,727,926 + +0.7 4,727,926 + -1.7 4,727,926 + -0.5 4,727,927 - -0.2 4,727,927 - +0.6 4,727,983 + -1.3 4,728,020 + -0.7 4,728,020 + -0.6 4,728,020 + +1.2 4,728,020 + -1.0 4,728,020 + +0.8 4,728,020 + +0.1 4,728,021 - +0.6 4,728,021 - +1.5 4,728,032 + -0.6 4,728,033 - -1.9 4,728,193 + AO353_21590 0.26 -2.3 4,728,193 + AO353_21590 0.26 -1.3 4,728,194 - AO353_21590 0.26 -0.6 4,728,222 + AO353_21590 0.32 -0.4 4,728,223 - AO353_21590 0.32 -0.7 4,728,237 - AO353_21590 0.35 -2.3 4,728,237 - AO353_21590 0.35 -1.1 4,728,379 + AO353_21590 0.62 +0.5 4,728,379 + AO353_21590 0.62 -1.3 4,728,379 + AO353_21590 0.62 +1.2 4,728,380 - AO353_21590 0.62 -0.2 4,728,380 - AO353_21590 0.62 -0.2 4,728,380 - AO353_21590 0.62 -0.2 4,728,380 - AO353_21590 0.62 -0.7 4,728,380 - AO353_21590 0.62 +0.4 4,728,380 - AO353_21590 0.62 -0.5 4,728,443 + AO353_21590 0.74 -0.7 4,728,443 + AO353_21590 0.74 +1.3 4,728,444 - AO353_21590 0.74 +0.7 4,728,444 - AO353_21590 0.74 -0.2 4,728,444 - AO353_21590 0.74 -1.0 4,728,499 + AO353_21590 0.85 +0.1 4,728,499 + AO353_21590 0.85 -2.0 4,728,500 - AO353_21590 0.85 +0.3 4,728,500 - AO353_21590 0.85 -1.0 4,728,533 + +1.4 4,728,534 - -1.6 4,728,579 + -0.3 4,728,579 + -0.9 4,728,579 + +0.2 4,728,579 + -0.7 4,728,579 + -0.5 4,728,579 + -0.2 4,728,579 + +0.5 4,728,579 + -0.5 4,728,580 - -0.4 4,728,580 - -0.6 4,728,580 - +0.8 4,728,580 - +1.0 4,728,580 - +2.8 4,728,580 - +1.8 4,728,580 - +2.1 4,728,666 + +0.0 4,728,666 + +0.2 4,728,666 + +1.6 4,728,666 + -1.0 4,728,666 + -1.6 4,728,667 - +1.3 4,728,667 - -0.2 4,728,670 + -0.6 4,728,671 - +5.6 4,728,671 - -1.7
Or see this region's nucleotide sequence