Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21300 and AO353_21305 are separated by 3 nucleotides AO353_21305 and AO353_21310 overlap by 1 nucleotides
AO353_21300: AO353_21300 - glycolate oxidase iron-sulfur subunit, at 4,660,895 to 4,662,112
_21300
AO353_21305: AO353_21305 - glycolate oxidase, at 4,662,116 to 4,663,174
_21305
AO353_21310: AO353_21310 - glycolate oxidase subunit GlcD, at 4,663,174 to 4,664,673
_21310
Position (kb)
4662
4663
4664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4661.145 kb on - strand, within AO353_21300 at 4661.145 kb on - strand, within AO353_21300 at 4661.145 kb on - strand, within AO353_21300 at 4661.473 kb on - strand, within AO353_21300 at 4661.510 kb on - strand, within AO353_21300 at 4661.955 kb on + strand, within AO353_21300 at 4661.955 kb on + strand, within AO353_21300 at 4661.955 kb on + strand, within AO353_21300 at 4661.955 kb on + strand, within AO353_21300 at 4661.956 kb on - strand, within AO353_21300 at 4661.956 kb on - strand, within AO353_21300 at 4662.000 kb on + strand at 4662.000 kb on + strand at 4662.001 kb on - strand at 4662.001 kb on - strand at 4662.001 kb on - strand at 4662.129 kb on + strand at 4662.130 kb on - strand at 4662.130 kb on - strand at 4662.130 kb on - strand at 4662.130 kb on - strand at 4662.130 kb on - strand at 4662.247 kb on - strand, within AO353_21305 at 4662.247 kb on - strand, within AO353_21305 at 4662.247 kb on - strand, within AO353_21305 at 4662.775 kb on + strand, within AO353_21305 at 4662.851 kb on + strand, within AO353_21305 at 4662.965 kb on - strand, within AO353_21305 at 4663.002 kb on + strand at 4663.002 kb on + strand, within AO353_21305 at 4663.003 kb on - strand, within AO353_21305 at 4663.003 kb on - strand, within AO353_21305 at 4663.003 kb on - strand, within AO353_21305 at 4663.614 kb on + strand, within AO353_21310 at 4663.614 kb on + strand, within AO353_21310 at 4663.614 kb on + strand, within AO353_21310 at 4663.615 kb on - strand, within AO353_21310 at 4663.615 kb on - strand, within AO353_21310 at 4663.615 kb on - strand, within AO353_21310 at 4663.615 kb on - strand, within AO353_21310 at 4663.615 kb on - strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.619 kb on + strand, within AO353_21310 at 4663.620 kb on - strand, within AO353_21310 at 4663.620 kb on - strand, within AO353_21310 at 4663.620 kb on - strand, within AO353_21310 at 4663.620 kb on - strand, within AO353_21310 at 4663.622 kb on + strand, within AO353_21310 at 4663.622 kb on + strand, within AO353_21310 at 4663.622 kb on + strand, within AO353_21310 at 4663.623 kb on - strand, within AO353_21310 at 4663.623 kb on - strand, within AO353_21310 at 4663.623 kb on - strand, within AO353_21310 at 4663.623 kb on - strand, within AO353_21310 at 4663.768 kb on + strand, within AO353_21310 at 4663.768 kb on + strand, within AO353_21310 at 4663.768 kb on + strand, within AO353_21310 at 4663.769 kb on - strand, within AO353_21310 at 4663.769 kb on - strand, within AO353_21310 at 4664.093 kb on - strand, within AO353_21310 at 4664.093 kb on - strand, within AO353_21310 at 4664.159 kb on + strand, within AO353_21310 at 4664.159 kb on + strand, within AO353_21310
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,661,145 - AO353_21300 0.21 +0.6 4,661,145 - AO353_21300 0.21 +0.0 4,661,145 - AO353_21300 0.21 -0.6 4,661,473 - AO353_21300 0.47 -0.7 4,661,510 - AO353_21300 0.50 +0.1 4,661,955 + AO353_21300 0.87 -0.9 4,661,955 + AO353_21300 0.87 +2.2 4,661,955 + AO353_21300 0.87 +0.9 4,661,955 + AO353_21300 0.87 -0.1 4,661,956 - AO353_21300 0.87 +1.9 4,661,956 - AO353_21300 0.87 +1.3 4,662,000 + -1.1 4,662,000 + -1.1 4,662,001 - -2.0 4,662,001 - -1.1 4,662,001 - -1.4 4,662,129 + -0.7 4,662,130 - -2.2 4,662,130 - -1.7 4,662,130 - -1.8 4,662,130 - -1.6 4,662,130 - -0.6 4,662,247 - AO353_21305 0.12 +1.6 4,662,247 - AO353_21305 0.12 -0.4 4,662,247 - AO353_21305 0.12 -0.1 4,662,775 + AO353_21305 0.62 -1.7 4,662,851 + AO353_21305 0.69 -0.0 4,662,965 - AO353_21305 0.80 -0.3 4,663,002 + -0.1 4,663,002 + AO353_21305 0.84 +1.9 4,663,003 - AO353_21305 0.84 -0.4 4,663,003 - AO353_21305 0.84 +0.2 4,663,003 - AO353_21305 0.84 -1.2 4,663,614 + AO353_21310 0.29 -0.9 4,663,614 + AO353_21310 0.29 -1.8 4,663,614 + AO353_21310 0.29 +0.2 4,663,615 - AO353_21310 0.29 -0.4 4,663,615 - AO353_21310 0.29 -2.0 4,663,615 - AO353_21310 0.29 +0.6 4,663,615 - AO353_21310 0.29 -0.7 4,663,615 - AO353_21310 0.29 +1.3 4,663,619 + AO353_21310 0.30 -0.1 4,663,619 + AO353_21310 0.30 -0.4 4,663,619 + AO353_21310 0.30 -1.8 4,663,619 + +2.5 4,663,619 + AO353_21310 0.30 -0.4 4,663,619 + AO353_21310 0.30 -1.7 4,663,619 + AO353_21310 0.30 -0.9 4,663,619 + AO353_21310 0.30 +0.3 4,663,620 - AO353_21310 0.30 -0.7 4,663,620 - AO353_21310 0.30 -0.1 4,663,620 - AO353_21310 0.30 +0.3 4,663,620 - AO353_21310 0.30 -0.1 4,663,622 + AO353_21310 0.30 +0.7 4,663,622 + AO353_21310 0.30 -1.9 4,663,622 + AO353_21310 0.30 +0.3 4,663,623 - AO353_21310 0.30 -0.1 4,663,623 - AO353_21310 0.30 +0.0 4,663,623 - AO353_21310 0.30 -1.3 4,663,623 - AO353_21310 0.30 +0.3 4,663,768 + AO353_21310 0.40 +1.5 4,663,768 + AO353_21310 0.40 -0.1 4,663,768 + AO353_21310 0.40 +1.6 4,663,769 - AO353_21310 0.40 +0.9 4,663,769 - AO353_21310 0.40 -0.4 4,664,093 - AO353_21310 0.61 +0.9 4,664,093 - AO353_21310 0.61 -0.7 4,664,159 + AO353_21310 0.66 +1.3 4,664,159 + AO353_21310 0.66 +0.3
Or see this region's nucleotide sequence