Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21160

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_21150 and AO353_21155 are separated by 43 nucleotidesAO353_21155 and AO353_21160 are separated by 144 nucleotidesAO353_21160 and AO353_21165 are separated by 346 nucleotides AO353_21150: AO353_21150 - polysaccharide biosynthesis protein, at 4,626,429 to 4,626,980 _21150 AO353_21155: AO353_21155 - glycosyl transferase, at 4,627,024 to 4,627,740 _21155 AO353_21160: AO353_21160 - transposase, at 4,627,885 to 4,628,172 _21160 AO353_21165: AO353_21165 - polysaccharide biosynthesis protein, at 4,628,519 to 4,629,889 _21165 Position (kb) 4627 4628 4629Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4626.972 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.976 kb on + strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.977 kb on - strandat 4626.978 kb on + strandat 4626.978 kb on + strandat 4626.979 kb on - strandat 4626.979 kb on - strandat 4627.039 kb on + strandat 4627.040 kb on - strandat 4627.040 kb on - strandat 4627.065 kb on + strandat 4627.065 kb on + strandat 4627.065 kb on + strandat 4627.065 kb on + strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.066 kb on - strandat 4627.100 kb on + strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.101 kb on - strand, within AO353_21155at 4627.145 kb on + strand, within AO353_21155at 4627.145 kb on + strand, within AO353_21155at 4627.164 kb on + strandat 4627.165 kb on - strand, within AO353_21155at 4627.266 kb on + strand, within AO353_21155at 4627.266 kb on + strand, within AO353_21155at 4627.289 kb on + strand, within AO353_21155at 4627.289 kb on + strand, within AO353_21155at 4627.289 kb on + strand, within AO353_21155at 4627.289 kb on + strand, within AO353_21155at 4627.289 kb on + strand, within AO353_21155at 4627.290 kb on - strand, within AO353_21155at 4627.290 kb on - strand, within AO353_21155at 4627.290 kb on - strand, within AO353_21155at 4627.290 kb on - strand, within AO353_21155at 4627.347 kb on + strand, within AO353_21155at 4627.347 kb on + strand, within AO353_21155at 4627.367 kb on - strand, within AO353_21155at 4627.430 kb on + strand, within AO353_21155at 4627.430 kb on + strand, within AO353_21155at 4627.430 kb on + strand, within AO353_21155at 4627.431 kb on - strand, within AO353_21155at 4627.431 kb on - strand, within AO353_21155at 4627.447 kb on + strand, within AO353_21155at 4627.447 kb on + strand, within AO353_21155at 4627.448 kb on - strand, within AO353_21155at 4627.448 kb on - strandat 4627.454 kb on + strand, within AO353_21155at 4627.543 kb on + strand, within AO353_21155at 4627.543 kb on + strand, within AO353_21155at 4627.543 kb on + strand, within AO353_21155at 4627.544 kb on - strand, within AO353_21155at 4627.560 kb on + strand, within AO353_21155at 4627.567 kb on - strand, within AO353_21155at 4627.589 kb on + strand, within AO353_21155at 4627.589 kb on + strand, within AO353_21155at 4627.589 kb on + strand, within AO353_21155at 4627.590 kb on - strand, within AO353_21155at 4627.590 kb on - strand, within AO353_21155at 4627.594 kb on + strand, within AO353_21155at 4627.598 kb on - strand, within AO353_21155at 4627.598 kb on - strand, within AO353_21155at 4627.602 kb on + strand, within AO353_21155at 4627.695 kb on + strandat 4627.702 kb on - strandat 4627.702 kb on - strandat 4627.702 kb on - strandat 4627.702 kb on - strandat 4627.710 kb on - strandat 4627.710 kb on - strandat 4627.738 kb on + strandat 4627.749 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.800 kb on + strandat 4627.801 kb on - strandat 4627.801 kb on - strandat 4627.801 kb on - strandat 4627.801 kb on - strandat 4627.860 kb on + strandat 4627.860 kb on + strandat 4627.871 kb on - strandat 4627.894 kb on + strandat 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.926 kb on + strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.927 kb on - strand, within AO353_21160at 4627.930 kb on + strand, within AO353_21160at 4627.930 kb on + strand, within AO353_21160at 4627.931 kb on - strand, within AO353_21160at 4627.938 kb on + strand, within AO353_21160at 4627.939 kb on - strand, within AO353_21160at 4627.960 kb on - strand, within AO353_21160at 4628.057 kb on + strand, within AO353_21160at 4628.217 kb on + strandat 4628.217 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.320 kb on + strandat 4628.321 kb on - strandat 4628.321 kb on - strandat 4628.321 kb on - strandat 4628.321 kb on - strandat 4628.321 kb on - strandat 4628.321 kb on - strandat 4628.329 kb on + strandat 4628.330 kb on - strandat 4628.330 kb on - strandat 4628.334 kb on + strandat 4628.335 kb on - strandat 4628.379 kb on + strandat 4628.452 kb on + strandat 4628.577 kb on - strandat 4628.631 kb on + strandat 4628.632 kb on - strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.652 kb on + strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.653 kb on - strandat 4628.656 kb on + strand, within AO353_21165at 4628.656 kb on + strand, within AO353_21165at 4628.656 kb on + strand, within AO353_21165at 4628.656 kb on + strand, within AO353_21165at 4628.656 kb on + strand, within AO353_21165at 4628.656 kb on + strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.657 kb on - strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.682 kb on + strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.683 kb on - strand, within AO353_21165at 4628.763 kb on + strand, within AO353_21165at 4628.763 kb on + strand, within AO353_21165at 4628.763 kb on + strand, within AO353_21165at 4628.764 kb on - strand, within AO353_21165at 4628.764 kb on - strand, within AO353_21165at 4628.764 kb on - strand, within AO353_21165at 4628.764 kb on - strand, within AO353_21165at 4628.818 kb on + strand, within AO353_21165at 4628.818 kb on + strand, within AO353_21165at 4628.845 kb on + strand, within AO353_21165at 4628.845 kb on + strand, within AO353_21165at 4628.845 kb on + strand, within AO353_21165at 4628.846 kb on - strand, within AO353_21165at 4628.846 kb on - strand, within AO353_21165at 4628.846 kb on - strand, within AO353_21165at 4628.865 kb on + strand, within AO353_21165at 4628.877 kb on + strand, within AO353_21165at 4628.877 kb on + strand, within AO353_21165at 4628.877 kb on + strand, within AO353_21165at 4628.877 kb on + strand, within AO353_21165at 4628.877 kb on + strand, within AO353_21165at 4628.878 kb on - strand, within AO353_21165at 4628.939 kb on + strand, within AO353_21165at 4628.940 kb on - strand, within AO353_21165at 4628.940 kb on - strand, within AO353_21165at 4628.964 kb on + strand, within AO353_21165at 4628.965 kb on - strand, within AO353_21165at 4628.967 kb on + strand, within AO353_21165at 4628.967 kb on + strandat 4628.967 kb on + strand, within AO353_21165at 4628.967 kb on + strand, within AO353_21165at 4628.967 kb on + strand, within AO353_21165at 4628.968 kb on - strand, within AO353_21165at 4628.968 kb on - strand, within AO353_21165at 4628.968 kb on - strand, within AO353_21165at 4628.968 kb on - strand, within AO353_21165at 4629.093 kb on + strand, within AO353_21165at 4629.093 kb on + strand, within AO353_21165at 4629.093 kb on + strand, within AO353_21165at 4629.093 kb on + strand, within AO353_21165at 4629.094 kb on - strand, within AO353_21165at 4629.094 kb on - strand, within AO353_21165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
4,626,972 + -0.4
4,626,976 + +0.6
4,626,976 + +0.3
4,626,976 + +0.7
4,626,976 + +0.1
4,626,976 + -1.3
4,626,976 + -0.9
4,626,976 + -0.7
4,626,976 + +0.9
4,626,976 + -0.7
4,626,976 + -0.6
4,626,976 + +0.3
4,626,976 + +0.6
4,626,977 - -0.1
4,626,977 - +1.4
4,626,977 - +1.2
4,626,977 - +2.3
4,626,977 - +0.9
4,626,977 - -0.7
4,626,977 - -1.1
4,626,977 - +0.4
4,626,978 + -0.4
4,626,978 + -2.7
4,626,979 - -0.8
4,626,979 - +0.7
4,627,039 + +0.1
4,627,040 - -1.1
4,627,040 - +0.9
4,627,065 + +1.9
4,627,065 + +0.5
4,627,065 + -0.5
4,627,065 + -0.2
4,627,066 - -1.1
4,627,066 - -0.3
4,627,066 - +0.0
4,627,066 - -2.1
4,627,066 - -0.9
4,627,066 - +0.9
4,627,066 - -0.9
4,627,100 + AO353_21155 0.11 -0.1
4,627,101 - AO353_21155 0.11 +0.7
4,627,101 - AO353_21155 0.11 -1.3
4,627,101 - AO353_21155 0.11 +1.2
4,627,101 - AO353_21155 0.11 -2.1
4,627,101 - AO353_21155 0.11 -0.1
4,627,101 - AO353_21155 0.11 +2.2
4,627,145 + AO353_21155 0.17 +0.7
4,627,145 + AO353_21155 0.17 -0.4
4,627,164 + +1.3
4,627,165 - AO353_21155 0.20 -0.7
4,627,266 + AO353_21155 0.34 +0.6
4,627,266 + AO353_21155 0.34 -0.4
4,627,289 + AO353_21155 0.37 -0.7
4,627,289 + AO353_21155 0.37 +0.3
4,627,289 + AO353_21155 0.37 -0.6
4,627,289 + AO353_21155 0.37 +1.2
4,627,289 + AO353_21155 0.37 -0.9
4,627,290 - AO353_21155 0.37 +0.9
4,627,290 - AO353_21155 0.37 -0.2
4,627,290 - AO353_21155 0.37 -2.0
4,627,290 - AO353_21155 0.37 +0.9
4,627,347 + AO353_21155 0.45 -1.3
4,627,347 + AO353_21155 0.45 +0.9
4,627,367 - AO353_21155 0.48 +0.9
4,627,430 + AO353_21155 0.57 -0.2
4,627,430 + AO353_21155 0.57 +1.2
4,627,430 + AO353_21155 0.57 +1.1
4,627,431 - AO353_21155 0.57 -0.7
4,627,431 - AO353_21155 0.57 +1.2
4,627,447 + AO353_21155 0.59 -0.7
4,627,447 + AO353_21155 0.59 -1.3
4,627,448 - AO353_21155 0.59 +0.7
4,627,448 - -0.4
4,627,454 + AO353_21155 0.60 -0.4
4,627,543 + AO353_21155 0.72 -0.4
4,627,543 + AO353_21155 0.72 +0.1
4,627,543 + AO353_21155 0.72 -0.6
4,627,544 - AO353_21155 0.73 +1.9
4,627,560 + AO353_21155 0.75 +0.3
4,627,567 - AO353_21155 0.76 -1.1
4,627,589 + AO353_21155 0.79 +0.2
4,627,589 + AO353_21155 0.79 -0.6
4,627,589 + AO353_21155 0.79 -0.4
4,627,590 - AO353_21155 0.79 +1.5
4,627,590 - AO353_21155 0.79 -0.4
4,627,594 + AO353_21155 0.79 +0.9
4,627,598 - AO353_21155 0.80 +0.2
4,627,598 - AO353_21155 0.80 -0.1
4,627,602 + AO353_21155 0.81 -1.1
4,627,695 + +0.0
4,627,702 - -0.7
4,627,702 - -1.2
4,627,702 - +0.4
4,627,702 - +0.6
4,627,710 - -0.4
4,627,710 - -0.6
4,627,738 + +0.9
4,627,749 + +0.2
4,627,800 + +1.3
4,627,800 + -0.3
4,627,800 + +1.0
4,627,800 + +1.2
4,627,800 + -1.1
4,627,800 + -0.9
4,627,800 + -0.8
4,627,800 + +0.3
4,627,800 + -0.9
4,627,800 + +0.9
4,627,801 - +2.3
4,627,801 - +1.9
4,627,801 - +0.9
4,627,801 - -0.3
4,627,860 + -0.1
4,627,860 + -1.2
4,627,871 - -0.7
4,627,894 + +0.6
4,627,926 + AO353_21160 0.14 -0.3
4,627,926 + AO353_21160 0.14 -0.7
4,627,926 + AO353_21160 0.14 +0.6
4,627,926 + AO353_21160 0.14 +0.3
4,627,926 + AO353_21160 0.14 -1.8
4,627,926 + AO353_21160 0.14 +0.0
4,627,926 + AO353_21160 0.14 -1.3
4,627,926 + AO353_21160 0.14 +0.9
4,627,926 + AO353_21160 0.14 +1.9
4,627,926 + AO353_21160 0.14 +4.9
4,627,926 + AO353_21160 0.14 +0.5
4,627,927 - AO353_21160 0.15 -0.7
4,627,927 - AO353_21160 0.15 +0.9
4,627,927 - AO353_21160 0.15 -0.1
4,627,927 - AO353_21160 0.15 +0.6
4,627,927 - AO353_21160 0.15 -0.1
4,627,927 - AO353_21160 0.15 +0.1
4,627,927 - AO353_21160 0.15 +1.3
4,627,927 - AO353_21160 0.15 -1.8
4,627,927 - AO353_21160 0.15 +0.3
4,627,927 - AO353_21160 0.15 -0.7
4,627,927 - AO353_21160 0.15 +0.9
4,627,930 + AO353_21160 0.16 -0.9
4,627,930 + AO353_21160 0.16 -0.7
4,627,931 - AO353_21160 0.16 +2.2
4,627,938 + AO353_21160 0.18 -1.4
4,627,939 - AO353_21160 0.19 +0.1
4,627,960 - AO353_21160 0.26 +0.1
4,628,057 + AO353_21160 0.60 -0.9
4,628,217 + +1.2
4,628,217 + -0.8
4,628,320 + -0.1
4,628,320 + -0.1
4,628,320 + -0.4
4,628,320 + -1.1
4,628,320 + -1.2
4,628,320 + -0.4
4,628,320 + +0.7
4,628,321 - -2.0
4,628,321 - -0.2
4,628,321 - +1.0
4,628,321 - +1.5
4,628,321 - -1.3
4,628,321 - -0.0
4,628,329 + -0.3
4,628,330 - -0.0
4,628,330 - -0.4
4,628,334 + +1.0
4,628,335 - +0.6
4,628,379 + +0.3
4,628,452 + -0.3
4,628,577 - +1.0
4,628,631 + +0.7
4,628,632 - +0.2
4,628,652 + +0.5
4,628,652 + -0.2
4,628,652 + +0.2
4,628,652 + -1.6
4,628,652 + +0.9
4,628,652 + +0.3
4,628,652 + -1.4
4,628,652 + -0.4
4,628,652 + -0.5
4,628,652 + +0.3
4,628,652 + +0.1
4,628,652 + -0.3
4,628,652 + -0.1
4,628,652 + -1.6
4,628,652 + -0.4
4,628,652 + +0.1
4,628,652 + +0.6
4,628,652 + +0.3
4,628,652 + -1.3
4,628,653 - +0.2
4,628,653 - +0.7
4,628,653 - -0.4
4,628,653 - -0.3
4,628,653 - -0.4
4,628,653 - +0.1
4,628,653 - -1.8
4,628,653 - -0.7
4,628,653 - -0.7
4,628,653 - -0.7
4,628,653 - -2.0
4,628,653 - +0.3
4,628,653 - -1.2
4,628,653 - -0.1
4,628,656 + AO353_21165 0.10 -0.3
4,628,656 + AO353_21165 0.10 +1.1
4,628,656 + AO353_21165 0.10 -0.1
4,628,656 + AO353_21165 0.10 -0.1
4,628,656 + AO353_21165 0.10 +0.3
4,628,656 + AO353_21165 0.10 -0.4
4,628,657 - AO353_21165 0.10 +0.0
4,628,657 - AO353_21165 0.10 -1.0
4,628,657 - AO353_21165 0.10 +0.3
4,628,657 - AO353_21165 0.10 +0.3
4,628,657 - AO353_21165 0.10 +0.3
4,628,657 - AO353_21165 0.10 +0.7
4,628,682 + AO353_21165 0.12 -1.1
4,628,682 + AO353_21165 0.12 -0.4
4,628,682 + AO353_21165 0.12 -0.1
4,628,682 + AO353_21165 0.12 -1.4
4,628,682 + AO353_21165 0.12 -0.4
4,628,682 + AO353_21165 0.12 -0.6
4,628,682 + AO353_21165 0.12 +0.3
4,628,682 + AO353_21165 0.12 -1.6
4,628,682 + AO353_21165 0.12 +0.2
4,628,682 + AO353_21165 0.12 +0.6
4,628,682 + AO353_21165 0.12 -0.4
4,628,683 - AO353_21165 0.12 -0.4
4,628,683 - AO353_21165 0.12 -0.4
4,628,683 - AO353_21165 0.12 -1.1
4,628,683 - AO353_21165 0.12 +0.2
4,628,683 - AO353_21165 0.12 +0.1
4,628,683 - AO353_21165 0.12 -1.2
4,628,763 + AO353_21165 0.18 -0.2
4,628,763 + AO353_21165 0.18 -0.2
4,628,763 + AO353_21165 0.18 +0.2
4,628,764 - AO353_21165 0.18 +1.7
4,628,764 - AO353_21165 0.18 -0.6
4,628,764 - AO353_21165 0.18 +0.5
4,628,764 - AO353_21165 0.18 -0.9
4,628,818 + AO353_21165 0.22 -0.3
4,628,818 + AO353_21165 0.22 -1.6
4,628,845 + AO353_21165 0.24 +0.9
4,628,845 + AO353_21165 0.24 -0.4
4,628,845 + AO353_21165 0.24 +0.3
4,628,846 - AO353_21165 0.24 -0.6
4,628,846 - AO353_21165 0.24 -0.6
4,628,846 - AO353_21165 0.24 -1.4
4,628,865 + AO353_21165 0.25 -0.8
4,628,877 + AO353_21165 0.26 -1.0
4,628,877 + AO353_21165 0.26 +0.2
4,628,877 + AO353_21165 0.26 +0.8
4,628,877 + AO353_21165 0.26 +0.2
4,628,877 + AO353_21165 0.26 +1.2
4,628,878 - AO353_21165 0.26 +0.6
4,628,939 + AO353_21165 0.31 -0.7
4,628,940 - AO353_21165 0.31 -0.1
4,628,940 - AO353_21165 0.31 +0.0
4,628,964 + AO353_21165 0.32 +0.5
4,628,965 - AO353_21165 0.33 -0.9
4,628,967 + AO353_21165 0.33 -0.8
4,628,967 + +1.3
4,628,967 + AO353_21165 0.33 -0.0
4,628,967 + AO353_21165 0.33 +0.3
4,628,967 + AO353_21165 0.33 -1.2
4,628,968 - AO353_21165 0.33 -0.5
4,628,968 - AO353_21165 0.33 +1.3
4,628,968 - AO353_21165 0.33 -0.4
4,628,968 - AO353_21165 0.33 -0.4
4,629,093 + AO353_21165 0.42 +0.7
4,629,093 + AO353_21165 0.42 -0.7
4,629,093 + AO353_21165 0.42 +2.2
4,629,093 + AO353_21165 0.42 +0.2
4,629,094 - AO353_21165 0.42 -0.1
4,629,094 - AO353_21165 0.42 -0.5

Or see this region's nucleotide sequence