Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20695

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20690 and AO353_20695 are separated by 66 nucleotidesAO353_20695 and AO353_20700 overlap by 4 nucleotidesAO353_20700 and AO353_20705 are separated by 160 nucleotides AO353_20690: AO353_20690 - amidophosphoribosyltransferase, at 4,539,183 to 4,540,688 _20690 AO353_20695: AO353_20695 - O-succinylhomoserine sulfhydrylase, at 4,540,755 to 4,541,966 _20695 AO353_20700: AO353_20700 - oxidoreductase, at 4,541,963 to 4,542,739 _20700 AO353_20705: AO353_20705 - tRNA-Val, at 4,542,900 to 4,542,975 _20705 Position (kb) 4540 4541 4542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4540.485 kb on + strandat 4540.677 kb on + strandat 4540.678 kb on - strandat 4540.694 kb on + strandat 4540.695 kb on - strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.719 kb on + strandat 4540.720 kb on - strandat 4540.720 kb on - strandat 4540.720 kb on - strandat 4540.720 kb on - strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.723 kb on + strandat 4540.724 kb on - strandat 4540.724 kb on - strandat 4540.724 kb on - strandat 4540.724 kb on - strandat 4540.724 kb on - strandat 4540.729 kb on + strandat 4540.804 kb on + strandat 4540.844 kb on + strandat 4540.844 kb on + strandat 4540.845 kb on - strandat 4540.845 kb on - strandat 4540.845 kb on - strandat 4540.845 kb on - strandat 4540.845 kb on - strandat 4540.890 kb on + strand, within AO353_20695at 4540.891 kb on - strand, within AO353_20695at 4540.962 kb on + strand, within AO353_20695at 4541.148 kb on + strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.149 kb on - strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.178 kb on + strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.179 kb on - strand, within AO353_20695at 4541.816 kb on + strand, within AO353_20695at 4542.271 kb on + strand, within AO353_20700at 4542.271 kb on + strand, within AO353_20700at 4542.271 kb on + strand, within AO353_20700at 4542.272 kb on - strand, within AO353_20700at 4542.272 kb on - strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.362 kb on + strand, within AO353_20700at 4542.363 kb on - strand, within AO353_20700at 4542.430 kb on + strand, within AO353_20700at 4542.440 kb on + strand, within AO353_20700at 4542.542 kb on - strand, within AO353_20700at 4542.542 kb on - strand, within AO353_20700at 4542.654 kb on + strand, within AO353_20700at 4542.655 kb on - strand, within AO353_20700at 4542.728 kb on + strandat 4542.728 kb on + strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.729 kb on - strandat 4542.856 kb on + strandat 4542.856 kb on + strandat 4542.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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4,540,485 + +0.3
4,540,677 + +0.1
4,540,678 - -1.1
4,540,694 + +0.1
4,540,695 - -1.2
4,540,719 + +3.9
4,540,719 + -2.8
4,540,719 + -1.7
4,540,719 + +0.6
4,540,719 + +0.8
4,540,719 + +1.7
4,540,719 + -0.5
4,540,719 + -0.9
4,540,720 - +1.2
4,540,720 - -0.4
4,540,720 - +1.9
4,540,720 - -0.1
4,540,723 + -0.2
4,540,723 + +0.9
4,540,723 + -1.5
4,540,723 + -0.7
4,540,723 + -1.7
4,540,723 + -0.1
4,540,723 + -0.5
4,540,723 + -1.5
4,540,723 + -0.7
4,540,723 + +1.0
4,540,723 + -0.2
4,540,724 - +0.3
4,540,724 - +0.6
4,540,724 - -0.0
4,540,724 - +0.6
4,540,724 - +0.9
4,540,729 + +0.7
4,540,804 + -1.2
4,540,844 + -0.7
4,540,844 + +0.9
4,540,845 - -1.1
4,540,845 - -0.5
4,540,845 - -1.1
4,540,845 - -2.2
4,540,845 - -1.8
4,540,890 + AO353_20695 0.11 -2.9
4,540,891 - AO353_20695 0.11 +0.9
4,540,962 + AO353_20695 0.17 -1.8
4,541,148 + AO353_20695 0.32 -2.4
4,541,149 - AO353_20695 0.33 -0.9
4,541,149 - AO353_20695 0.33 -0.4
4,541,149 - AO353_20695 0.33 -2.1
4,541,178 + AO353_20695 0.35 -2.2
4,541,178 + AO353_20695 0.35 -0.4
4,541,178 + AO353_20695 0.35 -1.7
4,541,178 + AO353_20695 0.35 -0.4
4,541,178 + AO353_20695 0.35 -2.0
4,541,179 - AO353_20695 0.35 -0.4
4,541,179 - AO353_20695 0.35 -2.0
4,541,179 - AO353_20695 0.35 -0.4
4,541,179 - AO353_20695 0.35 -0.4
4,541,179 - AO353_20695 0.35 -2.2
4,541,179 - AO353_20695 0.35 -0.1
4,541,179 - AO353_20695 0.35 -1.1
4,541,816 + AO353_20695 0.88 -2.5
4,542,271 + AO353_20700 0.40 -0.7
4,542,271 + AO353_20700 0.40 +0.7
4,542,271 + AO353_20700 0.40 -0.9
4,542,272 - AO353_20700 0.40 +1.5
4,542,272 - AO353_20700 0.40 -0.2
4,542,362 + AO353_20700 0.51 +0.0
4,542,362 + AO353_20700 0.51 -0.4
4,542,362 + AO353_20700 0.51 -1.2
4,542,363 - AO353_20700 0.51 -0.9
4,542,430 + AO353_20700 0.60 +0.4
4,542,440 + AO353_20700 0.61 -0.6
4,542,542 - AO353_20700 0.75 +0.1
4,542,542 - AO353_20700 0.75 -0.5
4,542,654 + AO353_20700 0.89 -0.6
4,542,655 - AO353_20700 0.89 +0.6
4,542,728 + +0.3
4,542,728 + -1.1
4,542,729 - +0.1
4,542,729 - -1.1
4,542,729 - +0.9
4,542,729 - +0.2
4,542,856 + +0.3
4,542,856 + -1.8
4,542,857 - +0.5

Or see this region's nucleotide sequence