Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20690 and AO353_20695 are separated by 66 nucleotides AO353_20695 and AO353_20700 overlap by 4 nucleotides AO353_20700 and AO353_20705 are separated by 160 nucleotides
AO353_20690: AO353_20690 - amidophosphoribosyltransferase, at 4,539,183 to 4,540,688
_20690
AO353_20695: AO353_20695 - O-succinylhomoserine sulfhydrylase, at 4,540,755 to 4,541,966
_20695
AO353_20700: AO353_20700 - oxidoreductase, at 4,541,963 to 4,542,739
_20700
AO353_20705: AO353_20705 - tRNA-Val, at 4,542,900 to 4,542,975
_20705
Position (kb)
4540
4541
4542 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4540.485 kb on + strand at 4540.677 kb on + strand at 4540.678 kb on - strand at 4540.694 kb on + strand at 4540.695 kb on - strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.719 kb on + strand at 4540.720 kb on - strand at 4540.720 kb on - strand at 4540.720 kb on - strand at 4540.720 kb on - strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.723 kb on + strand at 4540.724 kb on - strand at 4540.724 kb on - strand at 4540.724 kb on - strand at 4540.724 kb on - strand at 4540.724 kb on - strand at 4540.729 kb on + strand at 4540.804 kb on + strand at 4540.844 kb on + strand at 4540.844 kb on + strand at 4540.845 kb on - strand at 4540.845 kb on - strand at 4540.845 kb on - strand at 4540.845 kb on - strand at 4540.845 kb on - strand at 4540.890 kb on + strand, within AO353_20695 at 4540.891 kb on - strand, within AO353_20695 at 4540.962 kb on + strand, within AO353_20695 at 4541.148 kb on + strand, within AO353_20695 at 4541.149 kb on - strand, within AO353_20695 at 4541.149 kb on - strand, within AO353_20695 at 4541.149 kb on - strand, within AO353_20695 at 4541.178 kb on + strand, within AO353_20695 at 4541.178 kb on + strand, within AO353_20695 at 4541.178 kb on + strand, within AO353_20695 at 4541.178 kb on + strand, within AO353_20695 at 4541.178 kb on + strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.179 kb on - strand, within AO353_20695 at 4541.816 kb on + strand, within AO353_20695 at 4542.271 kb on + strand, within AO353_20700 at 4542.271 kb on + strand, within AO353_20700 at 4542.271 kb on + strand, within AO353_20700 at 4542.272 kb on - strand, within AO353_20700 at 4542.272 kb on - strand, within AO353_20700 at 4542.362 kb on + strand, within AO353_20700 at 4542.362 kb on + strand, within AO353_20700 at 4542.362 kb on + strand, within AO353_20700 at 4542.363 kb on - strand, within AO353_20700 at 4542.430 kb on + strand, within AO353_20700 at 4542.440 kb on + strand, within AO353_20700 at 4542.542 kb on - strand, within AO353_20700 at 4542.542 kb on - strand, within AO353_20700 at 4542.654 kb on + strand, within AO353_20700 at 4542.655 kb on - strand, within AO353_20700 at 4542.728 kb on + strand at 4542.728 kb on + strand at 4542.729 kb on - strand at 4542.729 kb on - strand at 4542.729 kb on - strand at 4542.729 kb on - strand at 4542.856 kb on + strand at 4542.856 kb on + strand at 4542.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,540,485 + +0.3 4,540,677 + +0.1 4,540,678 - -1.1 4,540,694 + +0.1 4,540,695 - -1.2 4,540,719 + +3.9 4,540,719 + -2.8 4,540,719 + -1.7 4,540,719 + +0.6 4,540,719 + +0.8 4,540,719 + +1.7 4,540,719 + -0.5 4,540,719 + -0.9 4,540,720 - +1.2 4,540,720 - -0.4 4,540,720 - +1.9 4,540,720 - -0.1 4,540,723 + -0.2 4,540,723 + +0.9 4,540,723 + -1.5 4,540,723 + -0.7 4,540,723 + -1.7 4,540,723 + -0.1 4,540,723 + -0.5 4,540,723 + -1.5 4,540,723 + -0.7 4,540,723 + +1.0 4,540,723 + -0.2 4,540,724 - +0.3 4,540,724 - +0.6 4,540,724 - -0.0 4,540,724 - +0.6 4,540,724 - +0.9 4,540,729 + +0.7 4,540,804 + -1.2 4,540,844 + -0.7 4,540,844 + +0.9 4,540,845 - -1.1 4,540,845 - -0.5 4,540,845 - -1.1 4,540,845 - -2.2 4,540,845 - -1.8 4,540,890 + AO353_20695 0.11 -2.9 4,540,891 - AO353_20695 0.11 +0.9 4,540,962 + AO353_20695 0.17 -1.8 4,541,148 + AO353_20695 0.32 -2.4 4,541,149 - AO353_20695 0.33 -0.9 4,541,149 - AO353_20695 0.33 -0.4 4,541,149 - AO353_20695 0.33 -2.1 4,541,178 + AO353_20695 0.35 -2.2 4,541,178 + AO353_20695 0.35 -0.4 4,541,178 + AO353_20695 0.35 -1.7 4,541,178 + AO353_20695 0.35 -0.4 4,541,178 + AO353_20695 0.35 -2.0 4,541,179 - AO353_20695 0.35 -0.4 4,541,179 - AO353_20695 0.35 -2.0 4,541,179 - AO353_20695 0.35 -0.4 4,541,179 - AO353_20695 0.35 -0.4 4,541,179 - AO353_20695 0.35 -2.2 4,541,179 - AO353_20695 0.35 -0.1 4,541,179 - AO353_20695 0.35 -1.1 4,541,816 + AO353_20695 0.88 -2.5 4,542,271 + AO353_20700 0.40 -0.7 4,542,271 + AO353_20700 0.40 +0.7 4,542,271 + AO353_20700 0.40 -0.9 4,542,272 - AO353_20700 0.40 +1.5 4,542,272 - AO353_20700 0.40 -0.2 4,542,362 + AO353_20700 0.51 +0.0 4,542,362 + AO353_20700 0.51 -0.4 4,542,362 + AO353_20700 0.51 -1.2 4,542,363 - AO353_20700 0.51 -0.9 4,542,430 + AO353_20700 0.60 +0.4 4,542,440 + AO353_20700 0.61 -0.6 4,542,542 - AO353_20700 0.75 +0.1 4,542,542 - AO353_20700 0.75 -0.5 4,542,654 + AO353_20700 0.89 -0.6 4,542,655 - AO353_20700 0.89 +0.6 4,542,728 + +0.3 4,542,728 + -1.1 4,542,729 - +0.1 4,542,729 - -1.1 4,542,729 - +0.9 4,542,729 - +0.2 4,542,856 + +0.3 4,542,856 + -1.8 4,542,857 - +0.5
Or see this region's nucleotide sequence