Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18775 and AO353_18780 are separated by 114 nucleotides AO353_18780 and AO353_18785 overlap by 4 nucleotides AO353_18785 and AO353_18790 are separated by 154 nucleotides
AO353_18775: AO353_18775 - flagellar biosynthesis protein FlhF, at 4,128,971 to 4,130,302
_18775
AO353_18780: AO353_18780 - cobyrinic acid a,c-diamide synthase, at 4,130,417 to 4,131,247
_18780
AO353_18785: AO353_18785 - flagellar biosynthesis sigma factor, at 4,131,244 to 4,131,984
_18785
AO353_18790: AO353_18790 - histidine kinase, at 4,132,139 to 4,132,522
_18790
Position (kb)
4130
4131
4132 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4129.675 kb on + strand, within AO353_18775 at 4129.676 kb on - strand, within AO353_18775 at 4129.709 kb on + strand, within AO353_18775 at 4129.709 kb on + strand, within AO353_18775 at 4129.710 kb on - strand, within AO353_18775 at 4129.710 kb on - strand, within AO353_18775 at 4129.721 kb on + strand, within AO353_18775 at 4129.802 kb on - strand, within AO353_18775 at 4129.802 kb on - strand, within AO353_18775 at 4129.976 kb on + strand, within AO353_18775 at 4129.977 kb on - strand, within AO353_18775 at 4129.977 kb on - strand, within AO353_18775 at 4129.993 kb on + strand, within AO353_18775 at 4129.993 kb on + strand, within AO353_18775 at 4130.024 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.033 kb on + strand, within AO353_18775 at 4130.034 kb on - strand, within AO353_18775 at 4130.034 kb on - strand, within AO353_18775 at 4130.034 kb on - strand, within AO353_18775 at 4130.068 kb on + strand, within AO353_18775 at 4130.069 kb on - strand, within AO353_18775 at 4130.127 kb on + strand, within AO353_18775 at 4130.127 kb on + strand, within AO353_18775 at 4130.138 kb on + strand, within AO353_18775 at 4130.139 kb on - strand, within AO353_18775 at 4130.139 kb on - strand, within AO353_18775 at 4130.172 kb on + strand at 4130.172 kb on + strand at 4130.172 kb on + strand at 4130.172 kb on + strand at 4130.173 kb on - strand at 4130.173 kb on - strand at 4130.178 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.257 kb on + strand at 4130.258 kb on - strand at 4130.258 kb on - strand at 4130.258 kb on - strand at 4130.274 kb on - strand at 4130.305 kb on + strand at 4130.305 kb on + strand at 4130.305 kb on + strand at 4130.305 kb on + strand at 4130.305 kb on + strand at 4130.305 kb on + strand at 4130.306 kb on - strand at 4130.308 kb on + strand at 4130.308 kb on + strand at 4130.309 kb on - strand at 4130.309 kb on - strand at 4130.309 kb on - strand at 4130.315 kb on + strand at 4130.316 kb on - strand at 4130.323 kb on + strand at 4130.323 kb on + strand at 4130.324 kb on - strand at 4130.324 kb on - strand at 4130.324 kb on - strand at 4130.327 kb on + strand at 4130.327 kb on + strand at 4130.327 kb on + strand at 4130.327 kb on + strand at 4130.327 kb on + strand at 4130.327 kb on + strand at 4130.328 kb on - strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.380 kb on + strand at 4130.381 kb on - strand at 4130.381 kb on - strand at 4130.381 kb on - strand at 4130.391 kb on + strand at 4130.405 kb on + strand at 4130.436 kb on + strand at 4130.483 kb on - strand at 4130.483 kb on - strand at 4130.599 kb on + strand, within AO353_18780 at 4130.600 kb on - strand, within AO353_18780 at 4130.600 kb on - strand, within AO353_18780 at 4130.643 kb on + strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.644 kb on - strand, within AO353_18780 at 4130.646 kb on + strand, within AO353_18780 at 4130.646 kb on + strand, within AO353_18780 at 4130.647 kb on - strand, within AO353_18780 at 4130.775 kb on + strand, within AO353_18780 at 4130.776 kb on - strand, within AO353_18780 at 4130.776 kb on - strand, within AO353_18780 at 4130.776 kb on - strand, within AO353_18780 at 4130.776 kb on - strand, within AO353_18780 at 4130.801 kb on - strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.844 kb on + strand, within AO353_18780 at 4130.845 kb on - strand, within AO353_18780 at 4130.845 kb on - strand, within AO353_18780 at 4130.845 kb on - strand, within AO353_18780 at 4130.845 kb on - strand, within AO353_18780 at 4130.888 kb on + strand, within AO353_18780 at 4131.035 kb on + strand, within AO353_18780 at 4131.098 kb on + strand, within AO353_18780 at 4131.099 kb on - strand, within AO353_18780 at 4131.099 kb on - strand, within AO353_18780 at 4131.243 kb on + strand at 4131.243 kb on + strand at 4131.243 kb on + strand at 4131.243 kb on + strand at 4131.244 kb on - strand at 4131.244 kb on - strand at 4131.244 kb on - strand at 4131.244 kb on - strand at 4131.259 kb on + strand at 4131.259 kb on + strand at 4131.269 kb on - strand at 4131.269 kb on - strand at 4131.295 kb on + strand at 4131.296 kb on - strand at 4131.326 kb on + strand, within AO353_18785 at 4131.327 kb on - strand, within AO353_18785 at 4131.327 kb on - strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.333 kb on + strand, within AO353_18785 at 4131.334 kb on - strand, within AO353_18785 at 4131.334 kb on - strand, within AO353_18785 at 4131.334 kb on - strand, within AO353_18785 at 4131.341 kb on - strand, within AO353_18785 at 4131.341 kb on - strand, within AO353_18785 at 4131.430 kb on + strand, within AO353_18785 at 4131.431 kb on - strand, within AO353_18785 at 4131.431 kb on - strand, within AO353_18785 at 4131.431 kb on - strand, within AO353_18785 at 4131.463 kb on + strand, within AO353_18785 at 4131.463 kb on + strand, within AO353_18785 at 4131.463 kb on + strand, within AO353_18785 at 4131.464 kb on - strand, within AO353_18785 at 4131.464 kb on - strand, within AO353_18785 at 4131.464 kb on - strand, within AO353_18785 at 4131.533 kb on + strand, within AO353_18785 at 4131.534 kb on - strand, within AO353_18785 at 4131.543 kb on + strand, within AO353_18785 at 4131.544 kb on - strand, within AO353_18785 at 4131.582 kb on + strand, within AO353_18785 at 4131.583 kb on - strand, within AO353_18785 at 4131.600 kb on + strand, within AO353_18785 at 4131.646 kb on + strand, within AO353_18785 at 4131.646 kb on + strand, within AO353_18785 at 4131.646 kb on + strand, within AO353_18785 at 4131.647 kb on - strand, within AO353_18785 at 4131.647 kb on - strand, within AO353_18785 at 4131.647 kb on - strand, within AO353_18785 at 4131.853 kb on + strand, within AO353_18785 at 4131.853 kb on + strand, within AO353_18785 at 4131.853 kb on + strand, within AO353_18785 at 4131.854 kb on - strand, within AO353_18785 at 4131.854 kb on - strand, within AO353_18785 at 4131.856 kb on + strand, within AO353_18785 at 4131.857 kb on - strand, within AO353_18785 at 4131.857 kb on - strand, within AO353_18785 at 4131.926 kb on + strand at 4131.926 kb on + strand at 4131.927 kb on - strand at 4131.927 kb on - strand at 4131.927 kb on - strand at 4131.927 kb on - strand at 4131.927 kb on - strand at 4132.118 kb on + strand at 4132.118 kb on + strand at 4132.118 kb on + strand at 4132.119 kb on - strand at 4132.119 kb on - strand at 4132.119 kb on - strand at 4132.197 kb on + strand, within AO353_18790 at 4132.197 kb on + strand, within AO353_18790 at 4132.197 kb on + strand, within AO353_18790 at 4132.197 kb on + strand, within AO353_18790 at 4132.198 kb on - strand, within AO353_18790
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,129,675 + AO353_18775 0.53 -0.6 4,129,676 - AO353_18775 0.53 -1.0 4,129,709 + AO353_18775 0.55 -0.9 4,129,709 + AO353_18775 0.55 +0.3 4,129,710 - AO353_18775 0.55 -0.1 4,129,710 - AO353_18775 0.55 -0.2 4,129,721 + AO353_18775 0.56 -0.1 4,129,802 - AO353_18775 0.62 -1.4 4,129,802 - AO353_18775 0.62 -2.0 4,129,976 + AO353_18775 0.75 -0.6 4,129,977 - AO353_18775 0.76 -0.9 4,129,977 - AO353_18775 0.76 -1.6 4,129,993 + AO353_18775 0.77 -0.2 4,129,993 + AO353_18775 0.77 -0.2 4,130,024 + AO353_18775 0.79 -1.2 4,130,033 + AO353_18775 0.80 -0.9 4,130,033 + AO353_18775 0.80 -0.2 4,130,033 + AO353_18775 0.80 -0.7 4,130,033 + AO353_18775 0.80 +1.1 4,130,033 + AO353_18775 0.80 -0.8 4,130,033 + AO353_18775 0.80 +0.8 4,130,033 + AO353_18775 0.80 +2.4 4,130,034 - AO353_18775 0.80 -1.4 4,130,034 - AO353_18775 0.80 -0.2 4,130,034 - AO353_18775 0.80 -0.2 4,130,068 + AO353_18775 0.82 -2.1 4,130,069 - AO353_18775 0.82 -1.1 4,130,127 + AO353_18775 0.87 +0.4 4,130,127 + AO353_18775 0.87 +0.1 4,130,138 + AO353_18775 0.88 -1.2 4,130,139 - AO353_18775 0.88 -0.9 4,130,139 - AO353_18775 0.88 -0.5 4,130,172 + -0.2 4,130,172 + -0.2 4,130,172 + -0.8 4,130,172 + -0.1 4,130,173 - +0.1 4,130,173 - -0.5 4,130,178 + +0.3 4,130,257 + -1.9 4,130,257 + +1.1 4,130,257 + +0.1 4,130,257 + +0.9 4,130,257 + -1.1 4,130,257 + +0.8 4,130,257 + -0.2 4,130,258 - -1.7 4,130,258 - -0.7 4,130,258 - -1.1 4,130,274 - -2.2 4,130,305 + -0.8 4,130,305 + +0.8 4,130,305 + +0.2 4,130,305 + +3.1 4,130,305 + +1.1 4,130,305 + +0.9 4,130,306 - -0.2 4,130,308 + +0.1 4,130,308 + +6.1 4,130,309 - +0.5 4,130,309 - +1.5 4,130,309 - -0.8 4,130,315 + -1.2 4,130,316 - +0.5 4,130,323 + +2.1 4,130,323 + +0.1 4,130,324 - +0.4 4,130,324 - -1.8 4,130,324 - +0.1 4,130,327 + +0.7 4,130,327 + -1.7 4,130,327 + +0.7 4,130,327 + -1.1 4,130,327 + -2.4 4,130,327 + +0.1 4,130,328 - +1.5 4,130,380 + -0.7 4,130,380 + +0.1 4,130,380 + +0.4 4,130,380 + -2.2 4,130,380 + +1.1 4,130,380 + +0.7 4,130,380 + -0.7 4,130,381 - +0.9 4,130,381 - -0.2 4,130,381 - -0.7 4,130,391 + -0.2 4,130,405 + -1.4 4,130,436 + -1.1 4,130,483 - -1.4 4,130,483 - -1.1 4,130,599 + AO353_18780 0.22 -0.7 4,130,600 - AO353_18780 0.22 +1.1 4,130,600 - AO353_18780 0.22 -0.7 4,130,643 + AO353_18780 0.27 -0.7 4,130,644 - AO353_18780 0.27 -0.7 4,130,644 - AO353_18780 0.27 +0.3 4,130,644 - AO353_18780 0.27 -1.0 4,130,644 - AO353_18780 0.27 -1.2 4,130,644 - AO353_18780 0.27 -2.5 4,130,644 - AO353_18780 0.27 -2.6 4,130,644 - AO353_18780 0.27 -1.1 4,130,644 - AO353_18780 0.27 +0.1 4,130,644 - AO353_18780 0.27 -0.5 4,130,646 + AO353_18780 0.28 -0.9 4,130,646 + AO353_18780 0.28 -2.0 4,130,647 - AO353_18780 0.28 +0.1 4,130,775 + AO353_18780 0.43 -1.2 4,130,776 - AO353_18780 0.43 -1.8 4,130,776 - AO353_18780 0.43 -1.1 4,130,776 - AO353_18780 0.43 +0.1 4,130,776 - AO353_18780 0.43 +1.1 4,130,801 - AO353_18780 0.46 -1.5 4,130,844 + AO353_18780 0.51 +0.3 4,130,844 + AO353_18780 0.51 +0.1 4,130,844 + AO353_18780 0.51 -1.2 4,130,844 + AO353_18780 0.51 -0.9 4,130,844 + AO353_18780 0.51 -1.7 4,130,844 + AO353_18780 0.51 -0.9 4,130,845 - AO353_18780 0.52 -0.5 4,130,845 - AO353_18780 0.52 +0.8 4,130,845 - AO353_18780 0.52 +0.5 4,130,845 - AO353_18780 0.52 -1.2 4,130,888 + AO353_18780 0.57 -0.2 4,131,035 + AO353_18780 0.74 +0.5 4,131,098 + AO353_18780 0.82 -1.2 4,131,099 - AO353_18780 0.82 +0.5 4,131,099 - AO353_18780 0.82 -0.9 4,131,243 + -1.8 4,131,243 + +0.5 4,131,243 + -0.1 4,131,243 + -1.5 4,131,244 - -1.4 4,131,244 - +0.5 4,131,244 - +0.1 4,131,244 - +0.4 4,131,259 + -0.2 4,131,259 + +1.4 4,131,269 - +0.7 4,131,269 - -1.1 4,131,295 + +0.3 4,131,296 - -0.2 4,131,326 + AO353_18785 0.11 -0.9 4,131,327 - AO353_18785 0.11 +1.0 4,131,327 - AO353_18785 0.11 -1.3 4,131,333 + AO353_18785 0.12 -0.2 4,131,333 + AO353_18785 0.12 -1.0 4,131,333 + AO353_18785 0.12 -0.9 4,131,333 + AO353_18785 0.12 +1.1 4,131,333 + AO353_18785 0.12 -0.2 4,131,333 + AO353_18785 0.12 +0.7 4,131,333 + AO353_18785 0.12 +0.1 4,131,334 - AO353_18785 0.12 +2.1 4,131,334 - AO353_18785 0.12 +0.7 4,131,334 - AO353_18785 0.12 +1.1 4,131,341 - AO353_18785 0.13 +0.4 4,131,341 - AO353_18785 0.13 -0.0 4,131,430 + AO353_18785 0.25 -1.1 4,131,431 - AO353_18785 0.25 -0.2 4,131,431 - AO353_18785 0.25 +0.1 4,131,431 - AO353_18785 0.25 -1.0 4,131,463 + AO353_18785 0.30 -1.2 4,131,463 + AO353_18785 0.30 -1.0 4,131,463 + AO353_18785 0.30 -0.4 4,131,464 - AO353_18785 0.30 -0.6 4,131,464 - AO353_18785 0.30 -1.3 4,131,464 - AO353_18785 0.30 +2.1 4,131,533 + AO353_18785 0.39 +0.8 4,131,534 - AO353_18785 0.39 -0.1 4,131,543 + AO353_18785 0.40 -1.2 4,131,544 - AO353_18785 0.40 -0.6 4,131,582 + AO353_18785 0.46 +0.1 4,131,583 - AO353_18785 0.46 +2.1 4,131,600 + AO353_18785 0.48 -1.7 4,131,646 + AO353_18785 0.54 -1.4 4,131,646 + AO353_18785 0.54 +2.1 4,131,646 + AO353_18785 0.54 +0.2 4,131,647 - AO353_18785 0.54 -0.2 4,131,647 - AO353_18785 0.54 +0.7 4,131,647 - AO353_18785 0.54 -1.1 4,131,853 + AO353_18785 0.82 -0.2 4,131,853 + AO353_18785 0.82 +3.1 4,131,853 + AO353_18785 0.82 -0.5 4,131,854 - AO353_18785 0.82 +0.9 4,131,854 - AO353_18785 0.82 +0.2 4,131,856 + AO353_18785 0.83 +0.8 4,131,857 - AO353_18785 0.83 +0.2 4,131,857 - AO353_18785 0.83 +0.1 4,131,926 + +0.7 4,131,926 + -0.5 4,131,927 - +1.4 4,131,927 - +0.9 4,131,927 - +1.8 4,131,927 - +0.5 4,131,927 - -0.3 4,132,118 + -1.2 4,132,118 + -0.1 4,132,118 + -1.0 4,132,119 - -0.0 4,132,119 - +0.6 4,132,119 - +0.3 4,132,197 + AO353_18790 0.15 +0.8 4,132,197 + AO353_18790 0.15 -0.4 4,132,197 + AO353_18790 0.15 +0.7 4,132,197 + AO353_18790 0.15 -0.6 4,132,198 - AO353_18790 0.15 +0.6
Or see this region's nucleotide sequence