Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17155 and AO353_17160 are separated by 179 nucleotides AO353_17160 and AO353_17165 are separated by 454 nucleotides
AO353_17155: AO353_17155 - RNA polymerase-associated protein RapA, at 3,792,682 to 3,795,528
_17155
AO353_17160: AO353_17160 - aspartate-semialdehyde dehydrogenase, at 3,795,708 to 3,796,049
_17160
AO353_17165: AO353_17165 - ATP-dependent helicase, at 3,796,504 to 3,796,620
_17165
Position (kb)
3795
3796
3797 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3794.982 kb on + strand, within AO353_17155 at 3794.992 kb on + strand, within AO353_17155 at 3794.992 kb on + strand, within AO353_17155 at 3794.992 kb on + strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3794.993 kb on - strand, within AO353_17155 at 3795.024 kb on + strand, within AO353_17155 at 3795.025 kb on - strand, within AO353_17155 at 3795.025 kb on - strand, within AO353_17155 at 3795.141 kb on - strand, within AO353_17155 at 3795.275 kb on + strand at 3795.275 kb on + strand at 3795.275 kb on + strand at 3795.275 kb on + strand at 3795.276 kb on - strand at 3795.276 kb on - strand at 3795.396 kb on - strand at 3795.423 kb on - strand at 3795.466 kb on + strand at 3795.467 kb on - strand at 3795.467 kb on - strand at 3795.467 kb on - strand at 3795.467 kb on - strand at 3795.467 kb on - strand at 3795.467 kb on - strand at 3795.472 kb on + strand at 3795.472 kb on + strand at 3795.473 kb on - strand at 3795.473 kb on - strand at 3795.515 kb on + strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.516 kb on - strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.560 kb on + strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.561 kb on - strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.562 kb on + strand at 3795.563 kb on - strand at 3795.563 kb on - strand at 3795.563 kb on - strand at 3795.603 kb on + strand at 3795.603 kb on + strand at 3795.604 kb on - strand at 3795.700 kb on + strand at 3795.700 kb on + strand at 3795.700 kb on + strand at 3795.701 kb on - strand at 3795.701 kb on - strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.703 kb on + strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.704 kb on - strand at 3795.747 kb on - strand, within AO353_17160 at 3795.824 kb on + strand, within AO353_17160 at 3795.825 kb on - strand, within AO353_17160 at 3796.054 kb on + strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.055 kb on - strand at 3796.149 kb on + strand at 3796.149 kb on + strand at 3796.149 kb on + strand at 3796.150 kb on - strand at 3796.150 kb on - strand at 3796.161 kb on + strand at 3796.162 kb on - strand at 3796.162 kb on - strand at 3796.162 kb on - strand at 3796.169 kb on + strand at 3796.169 kb on + strand at 3796.170 kb on - strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.186 kb on + strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.187 kb on - strand at 3796.260 kb on - strand at 3796.260 kb on - strand at 3796.260 kb on - strand at 3796.467 kb on - strand at 3796.602 kb on + strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.603 kb on - strand, within AO353_17165 at 3796.608 kb on + strand, within AO353_17165 at 3796.609 kb on - strand at 3796.618 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on + strand at 3796.713 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.714 kb on - strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.719 kb on + strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.720 kb on - strand at 3796.737 kb on - strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.793 kb on + strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.794 kb on - strand at 3796.797 kb on + strand at 3796.797 kb on + strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.798 kb on - strand at 3796.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,794,982 + AO353_17155 0.81 -0.3 3,794,992 + AO353_17155 0.81 -1.0 3,794,992 + AO353_17155 0.81 -0.3 3,794,992 + AO353_17155 0.81 +1.0 3,794,993 - AO353_17155 0.81 -1.8 3,794,993 - AO353_17155 0.81 +0.7 3,794,993 - AO353_17155 0.81 +2.3 3,794,993 - AO353_17155 0.81 -1.8 3,794,993 - AO353_17155 0.81 +1.0 3,794,993 - AO353_17155 0.81 -0.3 3,794,993 - AO353_17155 0.81 +0.2 3,794,993 - AO353_17155 0.81 -1.9 3,795,024 + AO353_17155 0.82 +0.7 3,795,025 - AO353_17155 0.82 +0.7 3,795,025 - AO353_17155 0.82 +1.3 3,795,141 - AO353_17155 0.86 +0.3 3,795,275 + -0.6 3,795,275 + +0.1 3,795,275 + +0.3 3,795,275 + -0.3 3,795,276 - -0.5 3,795,276 - +0.7 3,795,396 - +1.7 3,795,423 - -0.3 3,795,466 + +1.1 3,795,467 - -0.4 3,795,467 - +0.7 3,795,467 - -0.4 3,795,467 - -0.3 3,795,467 - -0.1 3,795,467 - -0.4 3,795,472 + +0.3 3,795,472 + -2.0 3,795,473 - -1.2 3,795,473 - +0.8 3,795,515 + +1.5 3,795,516 - +1.4 3,795,516 - -1.3 3,795,516 - -0.7 3,795,516 - -0.9 3,795,516 - +1.0 3,795,560 + +0.7 3,795,560 + -0.6 3,795,560 + -2.9 3,795,560 + -1.6 3,795,560 + -1.0 3,795,561 - -1.3 3,795,561 - -0.9 3,795,561 - -0.3 3,795,561 - -0.6 3,795,561 - -0.4 3,795,562 + -1.1 3,795,562 + +1.3 3,795,562 + +0.1 3,795,562 + -0.0 3,795,562 + +2.3 3,795,562 + -0.4 3,795,562 + +0.6 3,795,562 + +0.2 3,795,562 + -0.5 3,795,563 - +0.2 3,795,563 - +0.3 3,795,563 - -0.2 3,795,603 + +0.8 3,795,603 + +1.1 3,795,604 - -0.7 3,795,700 + -0.2 3,795,700 + -0.5 3,795,700 + -1.5 3,795,701 - +0.3 3,795,701 - +0.3 3,795,703 + +0.9 3,795,703 + -0.9 3,795,703 + -0.3 3,795,703 + -0.0 3,795,704 - +1.3 3,795,704 - -1.2 3,795,704 - -0.2 3,795,704 - +0.5 3,795,704 - -0.0 3,795,747 - AO353_17160 0.11 +0.3 3,795,824 + AO353_17160 0.34 -1.3 3,795,825 - AO353_17160 0.34 -1.0 3,796,054 + -0.0 3,796,055 - -0.9 3,796,055 - -1.0 3,796,055 - -0.1 3,796,055 - +0.7 3,796,055 - -0.2 3,796,149 + +2.1 3,796,149 + -0.0 3,796,149 + +2.3 3,796,150 - -0.0 3,796,150 - -1.2 3,796,161 + +1.1 3,796,162 - +1.5 3,796,162 - +1.6 3,796,162 - -1.3 3,796,169 + -0.0 3,796,169 + +0.3 3,796,170 - +0.1 3,796,186 + -1.3 3,796,186 + +1.3 3,796,186 + -0.4 3,796,186 + +0.7 3,796,186 + +1.4 3,796,186 + +0.1 3,796,186 + +0.1 3,796,187 - -0.7 3,796,187 - -0.8 3,796,187 - +0.1 3,796,187 - +1.3 3,796,187 - -2.2 3,796,187 - -0.6 3,796,187 - -0.0 3,796,187 - +0.3 3,796,187 - -1.6 3,796,260 - -1.2 3,796,260 - +1.7 3,796,260 - -0.7 3,796,467 - -1.7 3,796,602 + AO353_17165 0.84 -0.0 3,796,603 - AO353_17165 0.85 -1.4 3,796,603 - AO353_17165 0.85 +1.0 3,796,603 - AO353_17165 0.85 -0.3 3,796,603 - AO353_17165 0.85 -0.3 3,796,603 - AO353_17165 0.85 -1.2 3,796,608 + AO353_17165 0.89 +0.6 3,796,609 - -0.2 3,796,618 + +1.9 3,796,713 + -0.9 3,796,713 + +0.0 3,796,713 + +0.1 3,796,713 + -0.0 3,796,713 - -0.4 3,796,714 - +0.4 3,796,714 - +1.3 3,796,714 - -0.5 3,796,714 - -1.0 3,796,714 - -1.5 3,796,714 - +1.3 3,796,714 - -0.5 3,796,714 - +0.3 3,796,714 - +0.3 3,796,714 - -0.2 3,796,719 + -0.3 3,796,719 + +0.9 3,796,719 + -0.3 3,796,719 + +0.1 3,796,720 - -1.7 3,796,720 - +0.3 3,796,720 - -0.1 3,796,720 - +0.6 3,796,720 - -0.3 3,796,737 - +1.1 3,796,793 + +0.1 3,796,793 + -0.5 3,796,793 + +0.4 3,796,793 + +0.9 3,796,793 + -0.9 3,796,793 + +0.2 3,796,794 - +1.0 3,796,794 - -0.0 3,796,794 - -0.9 3,796,794 - -0.9 3,796,794 - +0.5 3,796,794 - +1.0 3,796,794 - -0.5 3,796,797 + +3.9 3,796,797 + -0.2 3,796,798 - -0.5 3,796,798 - -1.0 3,796,798 - -1.2 3,796,798 - -0.9 3,796,798 - -0.9 3,796,971 - +0.3
Or see this region's nucleotide sequence