Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16605

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16595 and AO353_16600 overlap by 13 nucleotidesAO353_16600 and AO353_16605 overlap by 1 nucleotidesAO353_16605 and AO353_16610 are separated by 211 nucleotides AO353_16595: AO353_16595 - pseudouridine synthase, at 3,686,273 to 3,687,331 _16595 AO353_16600: AO353_16600 - stationary phase survival protein SurE, at 3,687,319 to 3,688,068 _16600 AO353_16605: AO353_16605 - protein-L-isoaspartate O-methyltransferase, at 3,688,068 to 3,688,745 _16605 AO353_16610: AO353_16610 - peptigoglycan-binding protein LysM, at 3,688,957 to 3,689,814 _16610 Position (kb) 3688 3689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3687.267 kb on + strandat 3687.267 kb on + strandat 3687.267 kb on + strandat 3687.267 kb on + strandat 3687.324 kb on + strandat 3687.325 kb on - strandat 3687.325 kb on - strandat 3687.325 kb on - strandat 3687.325 kb on - strandat 3687.325 kb on - strandat 3687.325 kb on - strandat 3687.394 kb on + strand, within AO353_16600at 3687.394 kb on + strand, within AO353_16600at 3687.394 kb on + strand, within AO353_16600at 3687.394 kb on + strand, within AO353_16600at 3687.499 kb on - strand, within AO353_16600at 3687.506 kb on + strand, within AO353_16600at 3687.506 kb on + strand, within AO353_16600at 3687.506 kb on + strand, within AO353_16600at 3687.507 kb on - strand, within AO353_16600at 3687.507 kb on - strand, within AO353_16600at 3687.507 kb on - strand, within AO353_16600at 3687.507 kb on - strand, within AO353_16600at 3687.570 kb on + strand, within AO353_16600at 3687.571 kb on - strand, within AO353_16600at 3687.622 kb on + strand, within AO353_16600at 3687.622 kb on + strand, within AO353_16600at 3687.622 kb on + strand, within AO353_16600at 3687.623 kb on - strand, within AO353_16600at 3687.623 kb on - strand, within AO353_16600at 3687.623 kb on - strand, within AO353_16600at 3687.623 kb on - strand, within AO353_16600at 3687.727 kb on + strand, within AO353_16600at 3687.728 kb on - strand, within AO353_16600at 3687.728 kb on - strand, within AO353_16600at 3687.754 kb on + strand, within AO353_16600at 3687.754 kb on + strand, within AO353_16600at 3687.755 kb on - strand, within AO353_16600at 3687.755 kb on - strand, within AO353_16600at 3687.755 kb on - strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.822 kb on + strand, within AO353_16600at 3687.823 kb on - strand, within AO353_16600at 3687.823 kb on - strand, within AO353_16600at 3687.971 kb on + strand, within AO353_16600at 3687.982 kb on + strand, within AO353_16600at 3687.982 kb on + strand, within AO353_16600at 3687.982 kb on + strand, within AO353_16600at 3687.982 kb on + strand, within AO353_16600at 3687.982 kb on + strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3687.983 kb on - strand, within AO353_16600at 3688.015 kb on - strandat 3688.150 kb on + strand, within AO353_16605at 3688.150 kb on + strand, within AO353_16605at 3688.150 kb on + strand, within AO353_16605at 3688.150 kb on + strand, within AO353_16605at 3688.150 kb on + strand, within AO353_16605at 3688.150 kb on + strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.151 kb on - strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.152 kb on + strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.153 kb on - strand, within AO353_16605at 3688.245 kb on + strand, within AO353_16605at 3688.245 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.296 kb on + strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.297 kb on - strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.298 kb on + strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.299 kb on - strand, within AO353_16605at 3688.492 kb on + strand, within AO353_16605at 3688.492 kb on + strand, within AO353_16605at 3688.492 kb on + strand, within AO353_16605at 3688.493 kb on - strand, within AO353_16605at 3688.493 kb on - strand, within AO353_16605at 3688.493 kb on - strand, within AO353_16605at 3688.493 kb on - strand, within AO353_16605at 3688.493 kb on - strand, within AO353_16605at 3688.539 kb on + strand, within AO353_16605at 3688.539 kb on + strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.540 kb on - strand, within AO353_16605at 3688.551 kb on - strand, within AO353_16605at 3688.576 kb on + strand, within AO353_16605at 3688.576 kb on + strand, within AO353_16605at 3688.576 kb on + strand, within AO353_16605at 3688.576 kb on + strand, within AO353_16605at 3688.576 kb on + strand, within AO353_16605at 3688.577 kb on - strand, within AO353_16605at 3688.577 kb on - strand, within AO353_16605at 3688.577 kb on - strand, within AO353_16605at 3688.717 kb on + strandat 3688.718 kb on - strandat 3688.718 kb on - strandat 3688.743 kb on + strandat 3688.743 kb on + strandat 3688.744 kb on - strandat 3688.751 kb on + strandat 3688.751 kb on + strandat 3688.751 kb on + strandat 3688.751 kb on + strandat 3688.752 kb on - strandat 3688.771 kb on + strandat 3688.779 kb on + strandat 3688.779 kb on + strandat 3688.780 kb on - strandat 3688.780 kb on - strandat 3688.790 kb on + strandat 3688.791 kb on - strandat 3688.889 kb on + strandat 3688.889 kb on + strandat 3688.889 kb on + strandat 3688.890 kb on - strandat 3688.890 kb on - strandat 3688.890 kb on - strandat 3688.890 kb on - strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.891 kb on + strandat 3688.892 kb on - strandat 3688.915 kb on + strandat 3688.927 kb on + strandat 3688.989 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,687,267 + -0.8
3,687,267 + -1.0
3,687,267 + +0.2
3,687,267 + +0.9
3,687,324 + -0.5
3,687,325 - -0.8
3,687,325 - -0.7
3,687,325 - +0.3
3,687,325 - -0.9
3,687,325 - -0.8
3,687,325 - -1.1
3,687,394 + AO353_16600 0.10 -1.4
3,687,394 + AO353_16600 0.10 -1.5
3,687,394 + AO353_16600 0.10 +0.0
3,687,394 + AO353_16600 0.10 +0.4
3,687,499 - AO353_16600 0.24 -1.0
3,687,506 + AO353_16600 0.25 +1.2
3,687,506 + AO353_16600 0.25 +0.5
3,687,506 + AO353_16600 0.25 +1.3
3,687,507 - AO353_16600 0.25 -0.7
3,687,507 - AO353_16600 0.25 -1.2
3,687,507 - AO353_16600 0.25 -0.7
3,687,507 - AO353_16600 0.25 -1.2
3,687,570 + AO353_16600 0.33 +0.0
3,687,571 - AO353_16600 0.34 -1.2
3,687,622 + AO353_16600 0.40 +1.0
3,687,622 + AO353_16600 0.40 +0.4
3,687,622 + AO353_16600 0.40 +0.8
3,687,623 - AO353_16600 0.41 -0.9
3,687,623 - AO353_16600 0.41 -1.7
3,687,623 - AO353_16600 0.41 +0.3
3,687,623 - AO353_16600 0.41 -0.2
3,687,727 + AO353_16600 0.54 -0.6
3,687,728 - AO353_16600 0.55 +0.3
3,687,728 - AO353_16600 0.55 +1.8
3,687,754 + AO353_16600 0.58 +0.6
3,687,754 + AO353_16600 0.58 -0.8
3,687,755 - AO353_16600 0.58 +0.8
3,687,755 - AO353_16600 0.58 +0.0
3,687,755 - AO353_16600 0.58 -1.2
3,687,822 + AO353_16600 0.67 +1.0
3,687,822 + AO353_16600 0.67 -0.2
3,687,822 + AO353_16600 0.67 -1.6
3,687,822 + AO353_16600 0.67 -1.2
3,687,822 + AO353_16600 0.67 -0.2
3,687,822 + AO353_16600 0.67 -1.4
3,687,822 + AO353_16600 0.67 +0.9
3,687,823 - AO353_16600 0.67 +0.8
3,687,823 - AO353_16600 0.67 -1.6
3,687,971 + AO353_16600 0.87 -0.1
3,687,982 + AO353_16600 0.88 -0.2
3,687,982 + AO353_16600 0.88 -0.4
3,687,982 + AO353_16600 0.88 +1.3
3,687,982 + AO353_16600 0.88 +0.8
3,687,982 + AO353_16600 0.88 -0.9
3,687,983 - AO353_16600 0.89 -0.4
3,687,983 - AO353_16600 0.89 -0.7
3,687,983 - AO353_16600 0.89 -1.1
3,687,983 - AO353_16600 0.89 +0.5
3,687,983 - AO353_16600 0.89 -1.0
3,687,983 - AO353_16600 0.89 -1.2
3,687,983 - AO353_16600 0.89 -0.7
3,687,983 - AO353_16600 0.89 -0.1
3,687,983 - AO353_16600 0.89 -0.7
3,687,983 - AO353_16600 0.89 -1.9
3,688,015 - -0.5
3,688,150 + AO353_16605 0.12 -1.3
3,688,150 + AO353_16605 0.12 -1.2
3,688,150 + AO353_16605 0.12 +0.5
3,688,150 + AO353_16605 0.12 +1.8
3,688,150 + AO353_16605 0.12 -0.8
3,688,150 + AO353_16605 0.12 -0.8
3,688,151 - AO353_16605 0.12 -0.9
3,688,151 - AO353_16605 0.12 -1.6
3,688,151 - AO353_16605 0.12 +0.8
3,688,151 - AO353_16605 0.12 +1.3
3,688,151 - AO353_16605 0.12 -1.9
3,688,151 - AO353_16605 0.12 +1.3
3,688,151 - AO353_16605 0.12 -1.5
3,688,151 - AO353_16605 0.12 -1.5
3,688,151 - AO353_16605 0.12 +0.3
3,688,152 + AO353_16605 0.12 -1.2
3,688,152 + AO353_16605 0.12 -1.7
3,688,152 + AO353_16605 0.12 -1.5
3,688,152 + AO353_16605 0.12 +0.3
3,688,152 + AO353_16605 0.12 -0.7
3,688,152 + AO353_16605 0.12 -0.7
3,688,152 + AO353_16605 0.12 -0.2
3,688,153 - AO353_16605 0.13 +1.7
3,688,153 - AO353_16605 0.13 +0.3
3,688,153 - AO353_16605 0.13 -0.2
3,688,153 - AO353_16605 0.13 -0.6
3,688,153 - AO353_16605 0.13 +0.9
3,688,153 - AO353_16605 0.13 -1.4
3,688,153 - AO353_16605 0.13 -0.5
3,688,153 - AO353_16605 0.13 -0.8
3,688,153 - AO353_16605 0.13 +0.0
3,688,153 - AO353_16605 0.13 +0.5
3,688,153 - AO353_16605 0.13 -0.9
3,688,245 + AO353_16605 0.26 -1.0
3,688,245 + AO353_16605 0.26 +1.3
3,688,296 + AO353_16605 0.34 +0.1
3,688,296 + AO353_16605 0.34 -1.0
3,688,296 + AO353_16605 0.34 -0.5
3,688,296 + AO353_16605 0.34 -1.4
3,688,296 + AO353_16605 0.34 +0.0
3,688,296 + AO353_16605 0.34 +1.0
3,688,296 + AO353_16605 0.34 -1.5
3,688,296 + AO353_16605 0.34 -1.0
3,688,296 + AO353_16605 0.34 +0.5
3,688,296 + AO353_16605 0.34 -0.5
3,688,296 + AO353_16605 0.34 +1.3
3,688,296 + AO353_16605 0.34 -0.2
3,688,296 + AO353_16605 0.34 -2.2
3,688,296 + AO353_16605 0.34 -0.6
3,688,296 + AO353_16605 0.34 +0.0
3,688,296 + AO353_16605 0.34 -1.0
3,688,296 + AO353_16605 0.34 -0.2
3,688,297 - AO353_16605 0.34 -0.5
3,688,297 - AO353_16605 0.34 -2.1
3,688,297 - AO353_16605 0.34 -0.7
3,688,297 - AO353_16605 0.34 +0.3
3,688,297 - AO353_16605 0.34 -1.0
3,688,297 - AO353_16605 0.34 +0.5
3,688,297 - AO353_16605 0.34 -0.2
3,688,297 - AO353_16605 0.34 +1.1
3,688,297 - AO353_16605 0.34 +0.0
3,688,297 - AO353_16605 0.34 -1.4
3,688,297 - AO353_16605 0.34 -1.7
3,688,298 + AO353_16605 0.34 +0.3
3,688,298 + AO353_16605 0.34 +1.0
3,688,298 + AO353_16605 0.34 -1.5
3,688,298 + AO353_16605 0.34 +0.5
3,688,298 + AO353_16605 0.34 +0.4
3,688,298 + AO353_16605 0.34 -2.2
3,688,298 + AO353_16605 0.34 -2.3
3,688,298 + AO353_16605 0.34 +0.9
3,688,298 + AO353_16605 0.34 -2.6
3,688,298 + AO353_16605 0.34 +0.4
3,688,298 + AO353_16605 0.34 +1.3
3,688,298 + AO353_16605 0.34 +0.8
3,688,298 + AO353_16605 0.34 -1.2
3,688,298 + AO353_16605 0.34 -0.1
3,688,299 - AO353_16605 0.34 +0.3
3,688,299 - AO353_16605 0.34 -1.1
3,688,299 - AO353_16605 0.34 -2.8
3,688,299 - AO353_16605 0.34 -0.6
3,688,299 - AO353_16605 0.34 +2.3
3,688,299 - AO353_16605 0.34 -0.3
3,688,299 - AO353_16605 0.34 -1.3
3,688,299 - AO353_16605 0.34 -1.5
3,688,299 - AO353_16605 0.34 +1.0
3,688,299 - AO353_16605 0.34 -0.1
3,688,299 - AO353_16605 0.34 -0.1
3,688,299 - AO353_16605 0.34 -2.1
3,688,299 - AO353_16605 0.34 -1.0
3,688,299 - AO353_16605 0.34 -0.7
3,688,299 - AO353_16605 0.34 -1.1
3,688,299 - AO353_16605 0.34 +0.0
3,688,299 - AO353_16605 0.34 -0.4
3,688,299 - AO353_16605 0.34 -0.2
3,688,492 + AO353_16605 0.63 +0.0
3,688,492 + AO353_16605 0.63 +0.6
3,688,492 + AO353_16605 0.63 +0.8
3,688,493 - AO353_16605 0.63 -1.1
3,688,493 - AO353_16605 0.63 +2.0
3,688,493 - AO353_16605 0.63 -1.3
3,688,493 - AO353_16605 0.63 +0.0
3,688,493 - AO353_16605 0.63 -2.2
3,688,539 + AO353_16605 0.69 -0.6
3,688,539 + AO353_16605 0.69 -0.2
3,688,540 - AO353_16605 0.70 +1.0
3,688,540 - AO353_16605 0.70 +0.2
3,688,540 - AO353_16605 0.70 -1.0
3,688,540 - AO353_16605 0.70 -0.9
3,688,540 - AO353_16605 0.70 -1.0
3,688,540 - AO353_16605 0.70 -0.7
3,688,551 - AO353_16605 0.71 -0.6
3,688,576 + AO353_16605 0.75 -0.9
3,688,576 + AO353_16605 0.75 +0.0
3,688,576 + AO353_16605 0.75 +1.1
3,688,576 + AO353_16605 0.75 -0.2
3,688,576 + AO353_16605 0.75 +0.8
3,688,577 - AO353_16605 0.75 -0.5
3,688,577 - AO353_16605 0.75 +0.3
3,688,577 - AO353_16605 0.75 -0.5
3,688,717 + -1.5
3,688,718 - -0.5
3,688,718 - -0.4
3,688,743 + +0.2
3,688,743 + -1.4
3,688,744 - -0.7
3,688,751 + +0.3
3,688,751 + +0.5
3,688,751 + -2.2
3,688,751 + +2.3
3,688,752 - -1.3
3,688,771 + +0.2
3,688,779 + -1.2
3,688,779 + -2.1
3,688,780 - -1.1
3,688,780 - +0.4
3,688,790 + +0.2
3,688,791 - -0.7
3,688,889 + +2.3
3,688,889 + +0.0
3,688,889 + +0.9
3,688,890 - +0.9
3,688,890 - -1.0
3,688,890 - +0.3
3,688,890 - +0.2
3,688,891 + -0.1
3,688,891 + -1.4
3,688,891 + -0.5
3,688,891 + +2.3
3,688,891 + -0.7
3,688,891 + +0.5
3,688,891 + -0.1
3,688,891 + +2.3
3,688,891 + -0.7
3,688,891 + +0.4
3,688,891 + -1.1
3,688,891 + -1.3
3,688,891 + +0.3
3,688,891 + +1.2
3,688,891 + +0.3
3,688,892 - -1.2
3,688,915 + -0.7
3,688,927 + -1.6
3,688,989 + -0.5

Or see this region's nucleotide sequence