Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13135

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13130 and AO353_13135 overlap by 4 nucleotidesAO353_13135 and AO353_13140 overlap by 1 nucleotides AO353_13130: AO353_13130 - N-acetylmuramoyl-L-alanine amidase, at 2,909,180 to 2,910,616 _13130 AO353_13135: AO353_13135 - DNA mismatch repair protein, at 2,910,613 to 2,912,523 _13135 AO353_13140: AO353_13140 - tRNA dimethylallyltransferase, at 2,912,523 to 2,913,494 _13140 Position (kb) 2910 2911 2912 2913Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.410 kb on + strand, within AO353_13130at 2910.411 kb on - strand, within AO353_13130at 2910.759 kb on + strandat 2910.759 kb on + strandat 2910.759 kb on + strandat 2910.760 kb on - strandat 2911.397 kb on - strand, within AO353_13135at 2911.459 kb on + strand, within AO353_13135at 2911.600 kb on + strand, within AO353_13135at 2911.600 kb on + strand, within AO353_13135at 2911.600 kb on + strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.601 kb on - strand, within AO353_13135at 2911.673 kb on + strand, within AO353_13135at 2911.673 kb on + strand, within AO353_13135at 2911.776 kb on + strand, within AO353_13135at 2911.776 kb on + strand, within AO353_13135at 2911.777 kb on - strand, within AO353_13135at 2911.777 kb on - strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.779 kb on + strand, within AO353_13135at 2911.780 kb on - strand, within AO353_13135at 2911.780 kb on - strand, within AO353_13135at 2911.816 kb on + strand, within AO353_13135at 2911.817 kb on - strand, within AO353_13135at 2911.817 kb on - strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.822 kb on + strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.823 kb on - strand, within AO353_13135at 2911.938 kb on + strand, within AO353_13135at 2911.938 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.981 kb on + strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2911.982 kb on - strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.050 kb on + strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.051 kb on - strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.279 kb on + strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.280 kb on - strand, within AO353_13135at 2912.367 kb on + strandat 2912.545 kb on + strandat 2912.807 kb on + strand, within AO353_13140at 2912.838 kb on + strand, within AO353_13140at 2912.839 kb on - strand, within AO353_13140at 2912.841 kb on + strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2912.842 kb on - strand, within AO353_13140at 2913.050 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.125 kb on + strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.126 kb on - strand, within AO353_13140at 2913.180 kb on - strand, within AO353_13140at 2913.183 kb on - strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.242 kb on + strand, within AO353_13140at 2913.277 kb on + strand, within AO353_13140at 2913.278 kb on - strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.286 kb on + strand, within AO353_13140at 2913.287 kb on - strand, within AO353_13140at 2913.415 kb on + strandat 2913.465 kb on + strandat 2913.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,910,410 + AO353_13130 0.86 +0.7
2,910,410 + AO353_13130 0.86 -0.7
2,910,410 + AO353_13130 0.86 -0.9
2,910,410 + AO353_13130 0.86 -0.7
2,910,410 + AO353_13130 0.86 -0.4
2,910,410 + AO353_13130 0.86 -0.0
2,910,410 + AO353_13130 0.86 -1.1
2,910,411 - AO353_13130 0.86 +0.3
2,910,759 + +0.8
2,910,759 + +1.6
2,910,759 + +1.6
2,910,760 - +1.0
2,911,397 - AO353_13135 0.41 -0.2
2,911,459 + AO353_13135 0.44 +0.1
2,911,600 + AO353_13135 0.52 +0.3
2,911,600 + AO353_13135 0.52 -0.5
2,911,600 + AO353_13135 0.52 -0.9
2,911,601 - AO353_13135 0.52 -0.2
2,911,601 - AO353_13135 0.52 -0.6
2,911,601 - AO353_13135 0.52 +1.5
2,911,673 + AO353_13135 0.55 +1.1
2,911,673 + AO353_13135 0.55 +1.4
2,911,776 + AO353_13135 0.61 -0.1
2,911,776 + AO353_13135 0.61 -0.1
2,911,777 - AO353_13135 0.61 +1.4
2,911,777 - AO353_13135 0.61 -0.4
2,911,779 + AO353_13135 0.61 +0.4
2,911,779 + AO353_13135 0.61 -0.0
2,911,779 + AO353_13135 0.61 +0.1
2,911,780 - AO353_13135 0.61 +1.6
2,911,780 - AO353_13135 0.61 +2.2
2,911,816 + AO353_13135 0.63 +0.1
2,911,817 - AO353_13135 0.63 +1.2
2,911,817 - AO353_13135 0.63 +0.4
2,911,822 + AO353_13135 0.63 -0.6
2,911,822 + AO353_13135 0.63 -0.0
2,911,822 + AO353_13135 0.63 -0.2
2,911,822 + AO353_13135 0.63 +2.0
2,911,822 + AO353_13135 0.63 -0.7
2,911,822 + AO353_13135 0.63 -0.7
2,911,823 - AO353_13135 0.63 +1.1
2,911,823 - AO353_13135 0.63 +1.3
2,911,823 - AO353_13135 0.63 +1.3
2,911,823 - AO353_13135 0.63 +1.6
2,911,938 + AO353_13135 0.69 -1.3
2,911,938 + AO353_13135 0.69 -0.6
2,911,981 + AO353_13135 0.72 +1.3
2,911,981 + AO353_13135 0.72 -0.6
2,911,981 + AO353_13135 0.72 -0.1
2,911,981 + AO353_13135 0.72 -0.6
2,911,981 + AO353_13135 0.72 -0.5
2,911,981 + AO353_13135 0.72 -0.0
2,911,981 + AO353_13135 0.72 -0.6
2,911,981 + AO353_13135 0.72 -0.8
2,911,981 + AO353_13135 0.72 -0.3
2,911,982 - AO353_13135 0.72 +0.6
2,911,982 - AO353_13135 0.72 +2.3
2,911,982 - AO353_13135 0.72 +0.5
2,911,982 - AO353_13135 0.72 -0.0
2,911,982 - AO353_13135 0.72 +0.5
2,911,982 - AO353_13135 0.72 +0.1
2,911,982 - AO353_13135 0.72 +0.6
2,911,982 - AO353_13135 0.72 +1.7
2,911,982 - AO353_13135 0.72 +1.3
2,911,982 - AO353_13135 0.72 +1.6
2,911,982 - AO353_13135 0.72 -0.0
2,911,982 - AO353_13135 0.72 +1.4
2,911,982 - AO353_13135 0.72 +0.6
2,912,050 + AO353_13135 0.75 +0.4
2,912,050 + AO353_13135 0.75 -0.2
2,912,050 + AO353_13135 0.75 +11.5
2,912,050 + AO353_13135 0.75 -0.9
2,912,050 + AO353_13135 0.75 +0.8
2,912,050 + AO353_13135 0.75 -0.2
2,912,050 + AO353_13135 0.75 +1.2
2,912,050 + AO353_13135 0.75 +1.6
2,912,050 + AO353_13135 0.75 +0.1
2,912,050 + AO353_13135 0.75 -0.5
2,912,051 - AO353_13135 0.75 -1.4
2,912,051 - AO353_13135 0.75 -0.4
2,912,051 - AO353_13135 0.75 +2.2
2,912,051 - AO353_13135 0.75 +1.0
2,912,051 - AO353_13135 0.75 +2.3
2,912,279 + AO353_13135 0.87 -0.7
2,912,279 + AO353_13135 0.87 +0.2
2,912,279 + AO353_13135 0.87 -0.2
2,912,279 + AO353_13135 0.87 -0.5
2,912,280 - AO353_13135 0.87 +0.1
2,912,280 - AO353_13135 0.87 +1.0
2,912,280 - AO353_13135 0.87 +2.2
2,912,367 + -1.0
2,912,545 + -0.9
2,912,807 + AO353_13140 0.29 +0.9
2,912,838 + AO353_13140 0.32 +2.6
2,912,839 - AO353_13140 0.33 -1.0
2,912,841 + AO353_13140 0.33 +1.6
2,912,842 - AO353_13140 0.33 +0.3
2,912,842 - AO353_13140 0.33 +0.6
2,912,842 - AO353_13140 0.33 +0.7
2,912,842 - AO353_13140 0.33 +0.3
2,912,842 - AO353_13140 0.33 +1.4
2,912,842 - AO353_13140 0.33 -0.4
2,913,050 + AO353_13140 0.54 -1.2
2,913,125 + AO353_13140 0.62 -0.7
2,913,125 + AO353_13140 0.62 -0.7
2,913,126 - AO353_13140 0.62 -0.4
2,913,126 - AO353_13140 0.62 +1.4
2,913,126 - AO353_13140 0.62 +2.0
2,913,180 - AO353_13140 0.68 +2.2
2,913,183 - AO353_13140 0.68 +0.9
2,913,242 + AO353_13140 0.74 +0.6
2,913,242 + AO353_13140 0.74 -1.4
2,913,242 + AO353_13140 0.74 -0.2
2,913,277 + AO353_13140 0.78 -0.2
2,913,278 - AO353_13140 0.78 +3.0
2,913,286 + AO353_13140 0.78 -0.2
2,913,286 + AO353_13140 0.78 +1.4
2,913,287 - AO353_13140 0.79 +1.2
2,913,415 + -0.9
2,913,465 + -1.6
2,913,513 + +0.1

Or see this region's nucleotide sequence