Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12895

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12885 and AO353_12890 overlap by 1 nucleotidesAO353_12890 and AO353_12895 are separated by 103 nucleotidesAO353_12895 and AO353_12900 overlap by 1 nucleotides AO353_12885: AO353_12885 - glucosyltransferase I RfaG, at 2,852,973 to 2,854,094 _12885 AO353_12890: AO353_12890 - heptose kinase, at 2,854,094 to 2,854,900 _12890 AO353_12895: AO353_12895 - lipopolysaccharide kinase, at 2,855,004 to 2,855,756 _12895 AO353_12900: AO353_12900 - serine/threonine protein kinase, at 2,855,756 to 2,857,195 _12900 Position (kb) 2855 2856Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2854.883 kb on + strandat 2855.169 kb on + strand, within AO353_12895at 2855.169 kb on + strand, within AO353_12895at 2855.169 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.190 kb on + strand, within AO353_12895at 2855.296 kb on + strand, within AO353_12895at 2855.317 kb on + strand, within AO353_12895at 2855.317 kb on + strand, within AO353_12895at 2855.318 kb on - strand, within AO353_12895at 2855.493 kb on + strand, within AO353_12895at 2855.618 kb on - strand, within AO353_12895at 2855.618 kb on - strand, within AO353_12895at 2855.670 kb on + strand, within AO353_12895at 2855.670 kb on + strand, within AO353_12895at 2855.670 kb on + strand, within AO353_12895at 2855.670 kb on + strand, within AO353_12895at 2855.671 kb on - strand, within AO353_12895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,854,883 + +1.3
2,855,169 + AO353_12895 0.22 +0.1
2,855,169 + AO353_12895 0.22 -1.5
2,855,169 + AO353_12895 0.22 +5.7
2,855,190 + AO353_12895 0.25 +0.1
2,855,190 + AO353_12895 0.25 +0.0
2,855,190 + AO353_12895 0.25 +0.6
2,855,190 + AO353_12895 0.25 +0.1
2,855,190 + AO353_12895 0.25 +0.6
2,855,190 + AO353_12895 0.25 -1.5
2,855,296 + AO353_12895 0.39 -2.3
2,855,317 + AO353_12895 0.42 -0.4
2,855,317 + AO353_12895 0.42 -1.1
2,855,318 - AO353_12895 0.42 -0.6
2,855,493 + AO353_12895 0.65 +0.0
2,855,618 - AO353_12895 0.82 +0.0
2,855,618 - AO353_12895 0.82 +0.6
2,855,670 + AO353_12895 0.88 +0.1
2,855,670 + AO353_12895 0.88 -0.1
2,855,670 + AO353_12895 0.88 -0.7
2,855,670 + AO353_12895 0.88 +1.0
2,855,671 - AO353_12895 0.89 +1.6

Or see this region's nucleotide sequence