Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11330

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11320 and AO353_11325 are separated by 2 nucleotidesAO353_11325 and AO353_11330 are separated by 214 nucleotidesAO353_11330 and AO353_11335 are separated by 147 nucleotidesAO353_11335 and AO353_11340 are separated by 382 nucleotides AO353_11320: AO353_11320 - hypothetical protein, at 2,502,351 to 2,503,109 _11320 AO353_11325: AO353_11325 - serine protease, at 2,503,112 to 2,503,648 _11325 AO353_11330: AO353_11330 - hypothetical protein, at 2,503,863 to 2,504,324 _11330 AO353_11335: AO353_11335 - hypothetical protein, at 2,504,472 to 2,504,717 _11335 AO353_11340: AO353_11340 - MarR family transcriptional regulator, at 2,505,100 to 2,505,531 _11340 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2502.903 kb on + strand, within AO353_11320at 2502.904 kb on - strand, within AO353_11320at 2502.904 kb on - strand, within AO353_11320at 2503.027 kb on + strand, within AO353_11320at 2503.488 kb on + strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.489 kb on - strand, within AO353_11325at 2503.525 kb on + strand, within AO353_11325at 2503.525 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.529 kb on + strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.530 kb on - strand, within AO353_11325at 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.629 kb on + strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.630 kb on - strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.699 kb on + strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.700 kb on - strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.701 kb on + strandat 2503.702 kb on - strandat 2503.702 kb on - strandat 2503.702 kb on - strandat 2503.702 kb on - strandat 2503.706 kb on + strandat 2503.706 kb on + strandat 2503.706 kb on + strandat 2503.706 kb on + strandat 2503.706 kb on + strandat 2503.707 kb on - strandat 2503.707 kb on - strandat 2503.707 kb on - strandat 2503.707 kb on - strandat 2503.707 kb on - strandat 2503.707 kb on - strandat 2503.767 kb on + strandat 2503.767 kb on + strandat 2503.768 kb on - strandat 2503.792 kb on + strandat 2503.792 kb on + strandat 2503.799 kb on + strandat 2503.800 kb on - strandat 2503.820 kb on + strandat 2503.821 kb on - strandat 2503.868 kb on + strandat 2503.869 kb on - strandat 2503.869 kb on - strandat 2503.869 kb on - strandat 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.921 kb on + strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2503.922 kb on - strand, within AO353_11330at 2504.028 kb on + strand, within AO353_11330at 2504.028 kb on + strand, within AO353_11330at 2504.175 kb on + strand, within AO353_11330at 2504.175 kb on + strand, within AO353_11330at 2504.175 kb on + strand, within AO353_11330at 2504.176 kb on - strand, within AO353_11330at 2504.226 kb on + strand, within AO353_11330at 2504.226 kb on + strand, within AO353_11330at 2504.226 kb on + strand, within AO353_11330at 2504.226 kb on + strand, within AO353_11330at 2504.227 kb on - strand, within AO353_11330at 2504.227 kb on - strand, within AO353_11330at 2504.227 kb on - strand, within AO353_11330at 2504.227 kb on - strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.257 kb on + strand, within AO353_11330at 2504.258 kb on - strand, within AO353_11330at 2504.258 kb on - strand, within AO353_11330at 2504.277 kb on + strand, within AO353_11330at 2504.277 kb on + strand, within AO353_11330at 2504.305 kb on + strandat 2504.305 kb on + strandat 2504.305 kb on + strandat 2504.305 kb on + strandat 2504.306 kb on - strandat 2504.323 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.330 kb on - strandat 2504.335 kb on - strandat 2504.449 kb on + strandat 2504.449 kb on + strandat 2504.483 kb on + strandat 2504.484 kb on - strandat 2504.715 kb on + strandat 2504.715 kb on + strandat 2504.716 kb on - strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.749 kb on + strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.750 kb on - strandat 2504.878 kb on - strandat 2504.890 kb on + strandat 2504.891 kb on - strandat 2504.891 kb on - strandat 2504.891 kb on - strandat 2504.904 kb on + strandat 2504.904 kb on + strandat 2504.904 kb on + strandat 2504.905 kb on - strandat 2504.905 kb on - strandat 2504.905 kb on - strandat 2504.905 kb on - strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.906 kb on + strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.907 kb on - strandat 2504.988 kb on - strandat 2505.173 kb on - strand, within AO353_11340at 2505.173 kb on - strand, within AO353_11340at 2505.173 kb on - strand, within AO353_11340at 2505.316 kb on + strand, within AO353_11340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,502,903 + AO353_11320 0.73 -1.0
2,502,904 - AO353_11320 0.73 -1.2
2,502,904 - AO353_11320 0.73 -1.1
2,503,027 + AO353_11320 0.89 +1.0
2,503,488 + AO353_11325 0.70 -0.7
2,503,489 - AO353_11325 0.70 +0.4
2,503,489 - AO353_11325 0.70 +0.3
2,503,489 - AO353_11325 0.70 +1.0
2,503,489 - AO353_11325 0.70 -0.1
2,503,489 - AO353_11325 0.70 -1.4
2,503,489 - AO353_11325 0.70 -2.6
2,503,525 + AO353_11325 0.77 +0.2
2,503,525 + AO353_11325 0.77 +1.9
2,503,529 + AO353_11325 0.78 -0.6
2,503,529 + AO353_11325 0.78 +0.8
2,503,529 + AO353_11325 0.78 +2.1
2,503,529 + AO353_11325 0.78 +0.7
2,503,529 + AO353_11325 0.78 -1.2
2,503,529 + AO353_11325 0.78 -1.4
2,503,529 + AO353_11325 0.78 +0.8
2,503,529 + AO353_11325 0.78 -1.8
2,503,529 + AO353_11325 0.78 -0.7
2,503,529 + AO353_11325 0.78 -0.3
2,503,529 + AO353_11325 0.78 -1.0
2,503,529 + AO353_11325 0.78 -1.1
2,503,529 + AO353_11325 0.78 +1.2
2,503,530 - AO353_11325 0.78 +2.8
2,503,530 - AO353_11325 0.78 -0.2
2,503,530 - AO353_11325 0.78 -0.0
2,503,530 - AO353_11325 0.78 -0.9
2,503,530 - AO353_11325 0.78 +1.0
2,503,530 - AO353_11325 0.78 +1.8
2,503,530 - AO353_11325 0.78 -1.3
2,503,530 - AO353_11325 0.78 +1.0
2,503,530 - AO353_11325 0.78 +1.2
2,503,530 - AO353_11325 0.78 -0.3
2,503,530 - AO353_11325 0.78 +0.0
2,503,530 - AO353_11325 0.78 +0.1
2,503,629 + -0.6
2,503,629 + +0.7
2,503,629 + +0.6
2,503,629 + +0.1
2,503,629 + +0.4
2,503,629 + +1.8
2,503,629 + +1.2
2,503,629 + -0.6
2,503,629 + +0.8
2,503,629 + -0.5
2,503,629 + -0.6
2,503,629 + -0.7
2,503,630 - -0.0
2,503,630 - +0.2
2,503,630 - -0.0
2,503,630 - +0.4
2,503,630 - +0.2
2,503,630 - +1.8
2,503,630 - -0.1
2,503,630 - +0.1
2,503,630 - -0.7
2,503,699 + -0.2
2,503,699 + +1.0
2,503,699 + +1.8
2,503,699 + -0.7
2,503,699 + +0.7
2,503,699 + +0.0
2,503,699 + -0.2
2,503,699 + -1.2
2,503,699 + +1.5
2,503,699 + -1.5
2,503,699 + -0.2
2,503,699 + +0.1
2,503,699 + +1.4
2,503,699 + +0.2
2,503,699 + -1.0
2,503,699 + -0.0
2,503,700 - +0.8
2,503,700 - -0.0
2,503,700 - +1.2
2,503,700 - -1.3
2,503,700 - -0.8
2,503,700 - -0.8
2,503,700 - -1.0
2,503,700 - +0.2
2,503,700 - +1.5
2,503,700 - +0.0
2,503,700 - -0.3
2,503,700 - -0.8
2,503,700 - +0.6
2,503,700 - +1.8
2,503,700 - -1.7
2,503,700 - -1.3
2,503,700 - -0.4
2,503,700 - -0.1
2,503,701 + -0.2
2,503,701 + -0.4
2,503,701 + +0.5
2,503,701 + +0.1
2,503,701 + -0.6
2,503,701 + +0.4
2,503,701 + -0.6
2,503,701 + -0.3
2,503,701 + -0.2
2,503,701 + +1.8
2,503,701 + -1.4
2,503,701 + -0.8
2,503,701 + -0.9
2,503,701 + -0.4
2,503,702 - -0.4
2,503,702 - +1.4
2,503,702 - -0.8
2,503,702 - -1.0
2,503,706 + +1.8
2,503,706 + +0.6
2,503,706 + +1.2
2,503,706 + +0.2
2,503,706 + +1.2
2,503,707 - +1.8
2,503,707 - +3.4
2,503,707 - -0.2
2,503,707 - +0.4
2,503,707 - -1.7
2,503,707 - -1.0
2,503,767 + -0.9
2,503,767 + -0.4
2,503,768 - -0.9
2,503,792 + +1.4
2,503,792 + +0.9
2,503,799 + -0.7
2,503,800 - +0.5
2,503,820 + -1.7
2,503,821 - -0.6
2,503,868 + -1.4
2,503,869 - +0.3
2,503,869 - +0.9
2,503,869 - -0.0
2,503,921 + AO353_11330 0.13 +0.3
2,503,921 + AO353_11330 0.13 +0.4
2,503,921 + AO353_11330 0.13 +0.6
2,503,921 + AO353_11330 0.13 +0.9
2,503,921 + AO353_11330 0.13 -0.8
2,503,921 + AO353_11330 0.13 +0.4
2,503,921 + AO353_11330 0.13 -0.2
2,503,922 - AO353_11330 0.13 +0.8
2,503,922 - AO353_11330 0.13 -0.0
2,503,922 - AO353_11330 0.13 -0.2
2,503,922 - AO353_11330 0.13 +0.4
2,503,922 - AO353_11330 0.13 -0.2
2,503,922 - AO353_11330 0.13 -0.8
2,503,922 - AO353_11330 0.13 -0.3
2,503,922 - AO353_11330 0.13 -0.4
2,503,922 - AO353_11330 0.13 -0.4
2,503,922 - AO353_11330 0.13 -0.6
2,504,028 + AO353_11330 0.36 +4.8
2,504,028 + AO353_11330 0.36 +0.4
2,504,175 + AO353_11330 0.68 +0.5
2,504,175 + AO353_11330 0.68 +1.2
2,504,175 + AO353_11330 0.68 +2.2
2,504,176 - AO353_11330 0.68 +3.4
2,504,226 + AO353_11330 0.79 +0.2
2,504,226 + AO353_11330 0.79 +1.0
2,504,226 + AO353_11330 0.79 -0.5
2,504,226 + AO353_11330 0.79 +0.1
2,504,227 - AO353_11330 0.79 -0.8
2,504,227 - AO353_11330 0.79 +0.8
2,504,227 - AO353_11330 0.79 +2.2
2,504,227 - AO353_11330 0.79 +0.4
2,504,257 + AO353_11330 0.85 -0.3
2,504,257 + AO353_11330 0.85 +1.0
2,504,257 + AO353_11330 0.85 +0.8
2,504,257 + AO353_11330 0.85 -0.4
2,504,257 + AO353_11330 0.85 +1.3
2,504,257 + AO353_11330 0.85 -0.3
2,504,257 + AO353_11330 0.85 +1.2
2,504,257 + AO353_11330 0.85 -0.2
2,504,258 - AO353_11330 0.85 +0.5
2,504,258 - AO353_11330 0.85 +0.7
2,504,277 + AO353_11330 0.90 -1.0
2,504,277 + AO353_11330 0.90 -0.7
2,504,305 + -0.0
2,504,305 + +0.3
2,504,305 + -0.6
2,504,305 + -0.5
2,504,306 - -0.0
2,504,323 - +0.8
2,504,330 - +0.8
2,504,330 - +1.4
2,504,330 - -1.5
2,504,330 - -2.1
2,504,330 - -0.6
2,504,330 - +0.4
2,504,330 - +1.5
2,504,330 - +1.2
2,504,330 - +1.0
2,504,330 - -0.7
2,504,330 - +0.2
2,504,330 - -0.8
2,504,330 - +0.2
2,504,330 - -0.6
2,504,330 - -0.0
2,504,335 - -0.1
2,504,449 + -0.4
2,504,449 + -0.0
2,504,483 + +0.5
2,504,484 - +0.7
2,504,715 + -1.8
2,504,715 + -0.2
2,504,716 - +1.3
2,504,749 + +0.2
2,504,749 + +1.0
2,504,749 + -0.0
2,504,749 + -0.2
2,504,749 + -1.6
2,504,749 + -0.0
2,504,749 + +1.8
2,504,749 + +1.6
2,504,749 + -0.4
2,504,750 - +0.8
2,504,750 - -0.8
2,504,750 - -0.0
2,504,750 - +1.0
2,504,750 - +1.0
2,504,750 - -0.0
2,504,750 - -0.6
2,504,750 - -0.4
2,504,750 - +0.8
2,504,750 - -0.3
2,504,750 - -0.3
2,504,750 - +1.8
2,504,750 - -1.4
2,504,750 - -1.6
2,504,750 - +0.3
2,504,750 - -1.9
2,504,750 - +0.2
2,504,878 - -0.4
2,504,890 + +1.2
2,504,891 - -0.0
2,504,891 - +0.2
2,504,891 - -0.3
2,504,904 + -0.9
2,504,904 + +0.4
2,504,904 + +2.8
2,504,905 - +0.6
2,504,905 - +0.4
2,504,905 - -0.7
2,504,905 - +1.1
2,504,906 + +0.9
2,504,906 + +0.4
2,504,906 + -0.0
2,504,906 + +1.4
2,504,906 + +1.0
2,504,906 + -1.8
2,504,906 + -2.0
2,504,906 + +2.2
2,504,906 + -1.2
2,504,906 + +0.4
2,504,906 + +1.0
2,504,906 + -1.2
2,504,906 + -0.7
2,504,906 + -0.5
2,504,906 + -1.3
2,504,906 + +1.2
2,504,906 + +1.5
2,504,906 + -0.6
2,504,907 - +0.0
2,504,907 - -0.0
2,504,907 - +0.6
2,504,907 - -0.2
2,504,907 - -0.4
2,504,907 - +0.8
2,504,907 - -0.0
2,504,907 - -1.1
2,504,907 - +0.6
2,504,907 - -0.4
2,504,907 - +0.8
2,504,907 - +1.2
2,504,907 - -0.5
2,504,907 - -0.0
2,504,907 - -1.1
2,504,907 - +1.0
2,504,907 - -0.9
2,504,907 - -0.4
2,504,907 - -0.3
2,504,907 - -0.4
2,504,907 - +0.7
2,504,988 - +0.9
2,505,173 - AO353_11340 0.17 -0.0
2,505,173 - AO353_11340 0.17 -0.3
2,505,173 - AO353_11340 0.17 -0.6
2,505,316 + AO353_11340 0.50 +0.6

Or see this region's nucleotide sequence