Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10035

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10030 and AO353_10035 are separated by 189 nucleotidesAO353_10035 and AO353_10040 are separated by 384 nucleotides AO353_10030: AO353_10030 - pyruvate carboxylase subunit A, at 2,194,943 to 2,196,358 _10030 AO353_10035: AO353_10035 - LysR family transcriptional regulator, at 2,196,548 to 2,197,510 _10035 AO353_10040: AO353_10040 - transcriptional regulator, at 2,197,895 to 2,198,761 _10040 Position (kb) 2196 2197 2198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.601 kb on + strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.602 kb on - strand, within AO353_10030at 2195.660 kb on - strand, within AO353_10030at 2196.082 kb on + strand, within AO353_10030at 2196.118 kb on - strand, within AO353_10030at 2196.264 kb on + strandat 2196.264 kb on + strandat 2196.264 kb on + strandat 2196.264 kb on + strandat 2196.264 kb on + strandat 2196.265 kb on - strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.305 kb on + strandat 2196.306 kb on - strandat 2196.306 kb on - strandat 2196.306 kb on - strandat 2196.306 kb on - strandat 2196.315 kb on - strandat 2196.354 kb on - strandat 2196.354 kb on - strandat 2196.417 kb on + strandat 2196.417 kb on + strandat 2196.418 kb on - strandat 2196.501 kb on - strandat 2196.511 kb on - strandat 2196.543 kb on - strandat 2196.613 kb on - strandat 2196.613 kb on - strandat 2196.613 kb on - strandat 2196.620 kb on + strandat 2196.620 kb on + strandat 2196.621 kb on - strandat 2196.621 kb on - strandat 2196.621 kb on - strandat 2196.621 kb on - strandat 2196.621 kb on - strandat 2196.670 kb on - strand, within AO353_10035at 2196.716 kb on + strand, within AO353_10035at 2196.716 kb on + strand, within AO353_10035at 2196.716 kb on + strand, within AO353_10035at 2196.716 kb on + strand, within AO353_10035at 2196.717 kb on - strand, within AO353_10035at 2196.717 kb on - strand, within AO353_10035at 2196.734 kb on + strand, within AO353_10035at 2196.734 kb on + strand, within AO353_10035at 2196.734 kb on + strand, within AO353_10035at 2196.734 kb on + strand, within AO353_10035at 2196.735 kb on - strand, within AO353_10035at 2196.735 kb on - strand, within AO353_10035at 2196.735 kb on - strand, within AO353_10035at 2196.735 kb on - strand, within AO353_10035at 2196.759 kb on + strand, within AO353_10035at 2196.875 kb on + strand, within AO353_10035at 2196.875 kb on + strand, within AO353_10035at 2196.875 kb on + strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2196.876 kb on - strand, within AO353_10035at 2197.130 kb on + strand, within AO353_10035at 2197.130 kb on + strand, within AO353_10035at 2197.130 kb on + strand, within AO353_10035at 2197.130 kb on + strand, within AO353_10035at 2197.131 kb on - strand, within AO353_10035at 2197.131 kb on - strand, within AO353_10035at 2197.131 kb on - strand, within AO353_10035at 2197.131 kb on - strand, within AO353_10035at 2197.184 kb on + strand, within AO353_10035at 2197.184 kb on + strand, within AO353_10035at 2197.184 kb on + strandat 2197.185 kb on - strand, within AO353_10035at 2197.185 kb on - strand, within AO353_10035at 2197.185 kb on - strand, within AO353_10035at 2197.185 kb on - strand, within AO353_10035at 2197.260 kb on + strand, within AO353_10035at 2197.282 kb on - strand, within AO353_10035at 2197.358 kb on + strand, within AO353_10035at 2197.359 kb on - strand, within AO353_10035at 2197.359 kb on - strand, within AO353_10035at 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.504 kb on + strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.505 kb on - strandat 2197.648 kb on + strandat 2197.649 kb on - strandat 2197.698 kb on + strandat 2197.698 kb on + strandat 2197.698 kb on + strandat 2197.698 kb on + strandat 2197.698 kb on + strandat 2197.698 kb on + strandat 2197.699 kb on - strandat 2197.734 kb on + strandat 2197.735 kb on - strandat 2197.735 kb on - strandat 2197.735 kb on - strandat 2197.885 kb on + strandat 2197.913 kb on + strandat 2197.913 kb on + strandat 2197.914 kb on - strandat 2198.059 kb on + strand, within AO353_10040at 2198.059 kb on + strand, within AO353_10040at 2198.060 kb on - strand, within AO353_10040at 2198.060 kb on - strand, within AO353_10040at 2198.060 kb on - strand, within AO353_10040at 2198.060 kb on - strand, within AO353_10040at 2198.060 kb on - strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.061 kb on + strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.062 kb on - strand, within AO353_10040at 2198.317 kb on + strand, within AO353_10040at 2198.317 kb on + strand, within AO353_10040at 2198.318 kb on - strand, within AO353_10040at 2198.318 kb on - strand, within AO353_10040at 2198.361 kb on + strand, within AO353_10040at 2198.361 kb on + strand, within AO353_10040at 2198.362 kb on - strand, within AO353_10040at 2198.362 kb on - strand, within AO353_10040at 2198.362 kb on - strand, within AO353_10040at 2198.362 kb on - strand, within AO353_10040at 2198.481 kb on + strand, within AO353_10040at 2198.481 kb on + strand, within AO353_10040at 2198.481 kb on + strand, within AO353_10040

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,195,601 + AO353_10030 0.46 -0.5
2,195,601 + AO353_10030 0.46 -1.1
2,195,601 + AO353_10030 0.46 -1.0
2,195,601 + AO353_10030 0.46 +0.7
2,195,601 + AO353_10030 0.46 +0.3
2,195,601 + AO353_10030 0.46 -2.5
2,195,601 + AO353_10030 0.46 -0.7
2,195,601 + AO353_10030 0.46 -1.1
2,195,601 + AO353_10030 0.46 -0.1
2,195,601 + AO353_10030 0.46 -1.2
2,195,601 + AO353_10030 0.46 -0.6
2,195,602 - AO353_10030 0.47 -0.3
2,195,602 - AO353_10030 0.47 -1.5
2,195,602 - AO353_10030 0.47 -0.3
2,195,602 - AO353_10030 0.47 -0.7
2,195,602 - AO353_10030 0.47 -1.0
2,195,602 - AO353_10030 0.47 -0.3
2,195,602 - AO353_10030 0.47 +0.6
2,195,602 - AO353_10030 0.47 -0.8
2,195,660 - AO353_10030 0.51 -1.5
2,196,082 + AO353_10030 0.80 +1.9
2,196,118 - AO353_10030 0.83 -1.4
2,196,264 + -2.5
2,196,264 + -0.8
2,196,264 + -3.2
2,196,264 + -1.9
2,196,264 + -0.5
2,196,265 - -1.0
2,196,305 + -1.5
2,196,305 + +0.3
2,196,305 + -1.0
2,196,305 + +1.0
2,196,305 + -0.5
2,196,305 + -1.8
2,196,305 + -0.1
2,196,305 + -1.5
2,196,306 - +0.5
2,196,306 - +1.9
2,196,306 - -1.0
2,196,306 - -0.5
2,196,315 - -0.7
2,196,354 - -1.7
2,196,354 - -1.7
2,196,417 + -1.1
2,196,417 + -1.8
2,196,418 - -1.3
2,196,501 - -0.7
2,196,511 - -2.1
2,196,543 - -2.8
2,196,613 - -1.9
2,196,613 - -0.5
2,196,613 - +0.0
2,196,620 + -1.9
2,196,620 + +0.7
2,196,621 - -1.4
2,196,621 - -1.1
2,196,621 - -1.8
2,196,621 - +0.9
2,196,621 - -0.6
2,196,670 - AO353_10035 0.13 +0.5
2,196,716 + AO353_10035 0.17 -0.6
2,196,716 + AO353_10035 0.17 -1.5
2,196,716 + AO353_10035 0.17 +0.0
2,196,716 + AO353_10035 0.17 +1.3
2,196,717 - AO353_10035 0.18 -2.0
2,196,717 - AO353_10035 0.18 -0.5
2,196,734 + AO353_10035 0.19 +0.4
2,196,734 + AO353_10035 0.19 -0.8
2,196,734 + AO353_10035 0.19 -0.8
2,196,734 + AO353_10035 0.19 -1.8
2,196,735 - AO353_10035 0.19 -1.8
2,196,735 - AO353_10035 0.19 -0.7
2,196,735 - AO353_10035 0.19 -0.5
2,196,735 - AO353_10035 0.19 +0.5
2,196,759 + AO353_10035 0.22 -1.5
2,196,875 + AO353_10035 0.34 -1.2
2,196,875 + AO353_10035 0.34 -1.7
2,196,875 + AO353_10035 0.34 -0.3
2,196,876 - AO353_10035 0.34 -2.7
2,196,876 - AO353_10035 0.34 -1.7
2,196,876 - AO353_10035 0.34 -1.5
2,196,876 - AO353_10035 0.34 +0.3
2,196,876 - AO353_10035 0.34 -2.5
2,196,876 - AO353_10035 0.34 -0.6
2,196,876 - AO353_10035 0.34 -2.5
2,196,876 - AO353_10035 0.34 -3.3
2,197,130 + AO353_10035 0.60 -1.6
2,197,130 + AO353_10035 0.60 -1.0
2,197,130 + AO353_10035 0.60 -2.1
2,197,130 + AO353_10035 0.60 -0.1
2,197,131 - AO353_10035 0.61 -1.3
2,197,131 - AO353_10035 0.61 -1.3
2,197,131 - AO353_10035 0.61 -0.9
2,197,131 - AO353_10035 0.61 -2.8
2,197,184 + AO353_10035 0.66 +0.0
2,197,184 + AO353_10035 0.66 -1.7
2,197,184 + +1.9
2,197,185 - AO353_10035 0.66 -1.1
2,197,185 - AO353_10035 0.66 -0.8
2,197,185 - AO353_10035 0.66 -1.1
2,197,185 - AO353_10035 0.66 -1.0
2,197,260 + AO353_10035 0.74 -1.4
2,197,282 - AO353_10035 0.76 -1.4
2,197,358 + AO353_10035 0.84 -0.1
2,197,359 - AO353_10035 0.84 -2.0
2,197,359 - AO353_10035 0.84 -1.6
2,197,504 + +0.2
2,197,504 + +0.7
2,197,504 + -0.7
2,197,504 + -0.5
2,197,504 + -0.8
2,197,504 + +1.0
2,197,504 + +0.8
2,197,504 + -0.2
2,197,505 - +0.4
2,197,505 - -0.0
2,197,505 - +0.1
2,197,505 - +0.9
2,197,505 - -1.2
2,197,505 - -1.0
2,197,505 - -0.8
2,197,505 - -0.3
2,197,505 - -1.1
2,197,648 + -2.0
2,197,649 - -1.0
2,197,698 + -0.5
2,197,698 + -1.5
2,197,698 + -0.6
2,197,698 + +0.0
2,197,698 + -0.8
2,197,698 + -1.9
2,197,699 - -0.1
2,197,734 + +0.9
2,197,735 - -1.5
2,197,735 - +0.5
2,197,735 - -1.7
2,197,885 + +0.5
2,197,913 + -1.1
2,197,913 + -0.5
2,197,914 - -1.4
2,198,059 + AO353_10040 0.19 -0.3
2,198,059 + AO353_10040 0.19 +0.3
2,198,060 - AO353_10040 0.19 +0.0
2,198,060 - AO353_10040 0.19 -0.3
2,198,060 - AO353_10040 0.19 +0.0
2,198,060 - AO353_10040 0.19 -0.7
2,198,060 - AO353_10040 0.19 -0.5
2,198,061 + AO353_10040 0.19 +0.9
2,198,061 + AO353_10040 0.19 -0.7
2,198,061 + AO353_10040 0.19 -0.3
2,198,061 + AO353_10040 0.19 +1.3
2,198,061 + AO353_10040 0.19 -1.0
2,198,061 + AO353_10040 0.19 +0.9
2,198,061 + AO353_10040 0.19 +0.3
2,198,061 + AO353_10040 0.19 +0.2
2,198,061 + AO353_10040 0.19 +0.9
2,198,061 + AO353_10040 0.19 -1.1
2,198,061 + AO353_10040 0.19 +0.3
2,198,061 + AO353_10040 0.19 +0.4
2,198,061 + AO353_10040 0.19 +0.1
2,198,061 + AO353_10040 0.19 -0.5
2,198,061 + AO353_10040 0.19 +0.3
2,198,061 + AO353_10040 0.19 +0.4
2,198,061 + AO353_10040 0.19 -0.1
2,198,061 + AO353_10040 0.19 +0.9
2,198,061 + AO353_10040 0.19 +0.3
2,198,061 + AO353_10040 0.19 -1.3
2,198,061 + AO353_10040 0.19 -0.8
2,198,061 + AO353_10040 0.19 -0.1
2,198,062 - AO353_10040 0.19 -0.5
2,198,062 - AO353_10040 0.19 -0.6
2,198,062 - AO353_10040 0.19 +0.0
2,198,062 - AO353_10040 0.19 +0.3
2,198,062 - AO353_10040 0.19 -1.7
2,198,062 - AO353_10040 0.19 -0.6
2,198,062 - AO353_10040 0.19 -0.4
2,198,062 - AO353_10040 0.19 -0.5
2,198,062 - AO353_10040 0.19 -0.5
2,198,062 - AO353_10040 0.19 -1.1
2,198,062 - AO353_10040 0.19 -0.1
2,198,062 - AO353_10040 0.19 -0.7
2,198,062 - AO353_10040 0.19 +0.4
2,198,062 - AO353_10040 0.19 +0.0
2,198,062 - AO353_10040 0.19 +2.9
2,198,062 - AO353_10040 0.19 +0.7
2,198,062 - AO353_10040 0.19 -1.2
2,198,062 - AO353_10040 0.19 -0.3
2,198,062 - AO353_10040 0.19 -0.4
2,198,062 - AO353_10040 0.19 +0.3
2,198,062 - AO353_10040 0.19 -0.5
2,198,062 - AO353_10040 0.19 -1.0
2,198,062 - AO353_10040 0.19 +0.5
2,198,062 - AO353_10040 0.19 +2.9
2,198,317 + AO353_10040 0.49 +1.9
2,198,317 + AO353_10040 0.49 +0.6
2,198,318 - AO353_10040 0.49 +2.4
2,198,318 - AO353_10040 0.49 -0.3
2,198,361 + AO353_10040 0.54 -0.7
2,198,361 + AO353_10040 0.54 -0.6
2,198,362 - AO353_10040 0.54 -0.3
2,198,362 - AO353_10040 0.54 -1.0
2,198,362 - AO353_10040 0.54 -1.8
2,198,362 - AO353_10040 0.54 +0.0
2,198,481 + AO353_10040 0.68 +0.7
2,198,481 + AO353_10040 0.68 -0.6
2,198,481 + AO353_10040 0.68 +0.0

Or see this region's nucleotide sequence