Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09300 and AO353_09305 are separated by 6 nucleotides AO353_09305 and AO353_09310 overlap by 4 nucleotides AO353_09310 and AO353_09315 are separated by 277 nucleotides
AO353_09300: AO353_09300 - biopolymer transporter ExbB, at 2,038,857 to 2,039,852
_09300
AO353_09305: AO353_09305 - protein TolR, at 2,039,859 to 2,040,287
_09305
AO353_09310: AO353_09310 - energy transducer TonB, at 2,040,284 to 2,041,033
_09310
AO353_09315: AO353_09315 - LysR family transcriptional regulator, at 2,041,311 to 2,042,234
_09315
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2039.845 kb on + strand at 2039.845 kb on + strand at 2039.845 kb on + strand at 2039.845 kb on + strand at 2039.845 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.031 kb on + strand at 2041.032 kb on - strand at 2041.032 kb on - strand at 2041.032 kb on - strand at 2041.032 kb on - strand at 2041.054 kb on + strand at 2041.054 kb on + strand at 2041.054 kb on + strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.055 kb on - strand at 2041.140 kb on + strand at 2041.140 kb on + strand at 2041.140 kb on + strand at 2041.140 kb on + strand at 2041.140 kb on + strand at 2041.141 kb on - strand at 2041.141 kb on - strand at 2041.141 kb on - strand at 2041.252 kb on + strand at 2041.279 kb on + strand at 2041.280 kb on - strand at 2041.311 kb on - strand at 2041.327 kb on + strand at 2041.327 kb on + strand at 2041.327 kb on + strand at 2041.327 kb on + strand at 2041.327 kb on + strand at 2041.327 kb on + strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.328 kb on - strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.332 kb on + strand at 2041.333 kb on - strand at 2041.333 kb on - strand at 2041.333 kb on - strand at 2041.333 kb on - strand at 2041.333 kb on - strand at 2041.333 kb on - strand at 2041.541 kb on + strand, within AO353_09315 at 2041.541 kb on + strand, within AO353_09315 at 2041.541 kb on + strand, within AO353_09315 at 2041.541 kb on + strand, within AO353_09315 at 2041.541 kb on + strand, within AO353_09315 at 2041.541 kb on + strand, within AO353_09315 at 2041.542 kb on - strand, within AO353_09315 at 2041.605 kb on + strand, within AO353_09315 at 2041.605 kb on + strand, within AO353_09315 at 2041.605 kb on + strand, within AO353_09315 at 2041.605 kb on + strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.606 kb on - strand, within AO353_09315 at 2041.677 kb on + strand, within AO353_09315 at 2041.677 kb on + strand, within AO353_09315 at 2041.677 kb on + strand, within AO353_09315 at 2041.677 kb on + strand, within AO353_09315 at 2041.677 kb on + strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.678 kb on - strand, within AO353_09315 at 2041.791 kb on + strand, within AO353_09315 at 2041.792 kb on - strand, within AO353_09315 at 2041.792 kb on - strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.806 kb on + strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315 at 2041.807 kb on - strand, within AO353_09315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 2,039,845 + +1.8 2,039,845 + -0.7 2,039,845 + -0.0 2,039,845 + -0.1 2,039,845 + -0.0 2,041,031 + -0.2 2,041,031 + -0.3 2,041,031 + +0.4 2,041,031 + +1.6 2,041,031 + +0.8 2,041,031 + +0.6 2,041,031 + -2.0 2,041,031 + +0.9 2,041,032 - -0.1 2,041,032 - +0.2 2,041,032 - -0.8 2,041,032 - +0.1 2,041,054 + -0.3 2,041,054 + -0.5 2,041,054 + +1.0 2,041,055 - -0.4 2,041,055 - +0.5 2,041,055 - -0.8 2,041,055 - -1.2 2,041,055 - +1.1 2,041,055 - +0.5 2,041,055 - -0.7 2,041,055 - +3.4 2,041,055 - +0.1 2,041,140 + -0.1 2,041,140 + -1.0 2,041,140 + -1.5 2,041,140 + -1.5 2,041,140 + +1.0 2,041,141 - -0.0 2,041,141 - +0.5 2,041,141 - +0.5 2,041,252 + -0.7 2,041,279 + -0.1 2,041,280 - +1.5 2,041,311 - -0.2 2,041,327 + -1.2 2,041,327 + +1.2 2,041,327 + -1.0 2,041,327 + -0.2 2,041,327 + -1.4 2,041,327 + +1.0 2,041,328 - -0.9 2,041,328 - +1.3 2,041,328 - +0.7 2,041,328 - +1.8 2,041,328 - -0.5 2,041,328 - -0.7 2,041,328 - +0.5 2,041,328 - +0.2 2,041,332 + +0.2 2,041,332 + -0.5 2,041,332 + -2.0 2,041,332 + +0.5 2,041,332 + -0.4 2,041,332 + +0.3 2,041,332 + -0.0 2,041,332 + +0.2 2,041,332 + -0.2 2,041,332 + -0.9 2,041,332 + -0.9 2,041,332 + -0.2 2,041,333 - -0.4 2,041,333 - -0.4 2,041,333 - +2.2 2,041,333 - -1.1 2,041,333 - +0.3 2,041,333 - +0.6 2,041,541 + AO353_09315 0.25 -0.5 2,041,541 + AO353_09315 0.25 +1.2 2,041,541 + AO353_09315 0.25 +0.2 2,041,541 + AO353_09315 0.25 +0.9 2,041,541 + AO353_09315 0.25 +0.0 2,041,541 + AO353_09315 0.25 +0.4 2,041,542 - AO353_09315 0.25 -1.0 2,041,605 + AO353_09315 0.32 -0.2 2,041,605 + AO353_09315 0.32 -0.9 2,041,605 + AO353_09315 0.32 -0.8 2,041,605 + AO353_09315 0.32 -0.4 2,041,606 - AO353_09315 0.32 -0.0 2,041,606 - AO353_09315 0.32 -1.6 2,041,606 - AO353_09315 0.32 +1.5 2,041,606 - AO353_09315 0.32 +0.8 2,041,606 - AO353_09315 0.32 -0.4 2,041,606 - AO353_09315 0.32 +0.5 2,041,677 + AO353_09315 0.40 -0.4 2,041,677 + AO353_09315 0.40 +0.6 2,041,677 + AO353_09315 0.40 +0.6 2,041,677 + AO353_09315 0.40 +0.6 2,041,677 + AO353_09315 0.40 +0.7 2,041,678 - AO353_09315 0.40 +0.6 2,041,678 - AO353_09315 0.40 -1.4 2,041,678 - AO353_09315 0.40 -0.2 2,041,678 - AO353_09315 0.40 -0.4 2,041,678 - AO353_09315 0.40 -0.1 2,041,678 - AO353_09315 0.40 +0.2 2,041,678 - AO353_09315 0.40 -0.7 2,041,791 + AO353_09315 0.52 -0.6 2,041,792 - AO353_09315 0.52 -0.8 2,041,792 - AO353_09315 0.52 -0.4 2,041,806 + AO353_09315 0.54 -1.0 2,041,806 + AO353_09315 0.54 +0.6 2,041,806 + AO353_09315 0.54 -0.3 2,041,806 + AO353_09315 0.54 -1.5 2,041,806 + AO353_09315 0.54 +0.8 2,041,806 + AO353_09315 0.54 +0.5 2,041,806 + AO353_09315 0.54 -0.0 2,041,807 - AO353_09315 0.54 -1.2 2,041,807 - AO353_09315 0.54 +0.2 2,041,807 - AO353_09315 0.54 -0.4 2,041,807 - AO353_09315 0.54 +0.7 2,041,807 - AO353_09315 0.54 -0.5 2,041,807 - AO353_09315 0.54 +0.5 2,041,807 - AO353_09315 0.54 +0.5 2,041,807 - AO353_09315 0.54 -0.1 2,041,807 - AO353_09315 0.54 -0.6 2,041,807 - AO353_09315 0.54 -1.3 2,041,807 - AO353_09315 0.54 -0.2 2,041,807 - AO353_09315 0.54 +1.5
Or see this region's nucleotide sequence