Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09310

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09300 and AO353_09305 are separated by 6 nucleotidesAO353_09305 and AO353_09310 overlap by 4 nucleotidesAO353_09310 and AO353_09315 are separated by 277 nucleotides AO353_09300: AO353_09300 - biopolymer transporter ExbB, at 2,038,857 to 2,039,852 _09300 AO353_09305: AO353_09305 - protein TolR, at 2,039,859 to 2,040,287 _09305 AO353_09310: AO353_09310 - energy transducer TonB, at 2,040,284 to 2,041,033 _09310 AO353_09315: AO353_09315 - LysR family transcriptional regulator, at 2,041,311 to 2,042,234 _09315 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.031 kb on + strandat 2041.032 kb on - strandat 2041.032 kb on - strandat 2041.032 kb on - strandat 2041.032 kb on - strandat 2041.054 kb on + strandat 2041.054 kb on + strandat 2041.054 kb on + strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.055 kb on - strandat 2041.140 kb on + strandat 2041.140 kb on + strandat 2041.140 kb on + strandat 2041.140 kb on + strandat 2041.140 kb on + strandat 2041.141 kb on - strandat 2041.141 kb on - strandat 2041.141 kb on - strandat 2041.252 kb on + strandat 2041.279 kb on + strandat 2041.280 kb on - strandat 2041.311 kb on - strandat 2041.327 kb on + strandat 2041.327 kb on + strandat 2041.327 kb on + strandat 2041.327 kb on + strandat 2041.327 kb on + strandat 2041.327 kb on + strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.328 kb on - strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.332 kb on + strandat 2041.333 kb on - strandat 2041.333 kb on - strandat 2041.333 kb on - strandat 2041.333 kb on - strandat 2041.333 kb on - strandat 2041.333 kb on - strandat 2041.541 kb on + strand, within AO353_09315at 2041.541 kb on + strand, within AO353_09315at 2041.541 kb on + strand, within AO353_09315at 2041.541 kb on + strand, within AO353_09315at 2041.541 kb on + strand, within AO353_09315at 2041.541 kb on + strand, within AO353_09315at 2041.542 kb on - strand, within AO353_09315at 2041.605 kb on + strand, within AO353_09315at 2041.605 kb on + strand, within AO353_09315at 2041.605 kb on + strand, within AO353_09315at 2041.605 kb on + strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.606 kb on - strand, within AO353_09315at 2041.677 kb on + strand, within AO353_09315at 2041.677 kb on + strand, within AO353_09315at 2041.677 kb on + strand, within AO353_09315at 2041.677 kb on + strand, within AO353_09315at 2041.677 kb on + strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.678 kb on - strand, within AO353_09315at 2041.791 kb on + strand, within AO353_09315at 2041.792 kb on - strand, within AO353_09315at 2041.792 kb on - strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.806 kb on + strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315at 2041.807 kb on - strand, within AO353_09315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,039,845 + +1.8
2,039,845 + -0.7
2,039,845 + -0.0
2,039,845 + -0.1
2,039,845 + -0.0
2,041,031 + -0.2
2,041,031 + -0.3
2,041,031 + +0.4
2,041,031 + +1.6
2,041,031 + +0.8
2,041,031 + +0.6
2,041,031 + -2.0
2,041,031 + +0.9
2,041,032 - -0.1
2,041,032 - +0.2
2,041,032 - -0.8
2,041,032 - +0.1
2,041,054 + -0.3
2,041,054 + -0.5
2,041,054 + +1.0
2,041,055 - -0.4
2,041,055 - +0.5
2,041,055 - -0.8
2,041,055 - -1.2
2,041,055 - +1.1
2,041,055 - +0.5
2,041,055 - -0.7
2,041,055 - +3.4
2,041,055 - +0.1
2,041,140 + -0.1
2,041,140 + -1.0
2,041,140 + -1.5
2,041,140 + -1.5
2,041,140 + +1.0
2,041,141 - -0.0
2,041,141 - +0.5
2,041,141 - +0.5
2,041,252 + -0.7
2,041,279 + -0.1
2,041,280 - +1.5
2,041,311 - -0.2
2,041,327 + -1.2
2,041,327 + +1.2
2,041,327 + -1.0
2,041,327 + -0.2
2,041,327 + -1.4
2,041,327 + +1.0
2,041,328 - -0.9
2,041,328 - +1.3
2,041,328 - +0.7
2,041,328 - +1.8
2,041,328 - -0.5
2,041,328 - -0.7
2,041,328 - +0.5
2,041,328 - +0.2
2,041,332 + +0.2
2,041,332 + -0.5
2,041,332 + -2.0
2,041,332 + +0.5
2,041,332 + -0.4
2,041,332 + +0.3
2,041,332 + -0.0
2,041,332 + +0.2
2,041,332 + -0.2
2,041,332 + -0.9
2,041,332 + -0.9
2,041,332 + -0.2
2,041,333 - -0.4
2,041,333 - -0.4
2,041,333 - +2.2
2,041,333 - -1.1
2,041,333 - +0.3
2,041,333 - +0.6
2,041,541 + AO353_09315 0.25 -0.5
2,041,541 + AO353_09315 0.25 +1.2
2,041,541 + AO353_09315 0.25 +0.2
2,041,541 + AO353_09315 0.25 +0.9
2,041,541 + AO353_09315 0.25 +0.0
2,041,541 + AO353_09315 0.25 +0.4
2,041,542 - AO353_09315 0.25 -1.0
2,041,605 + AO353_09315 0.32 -0.2
2,041,605 + AO353_09315 0.32 -0.9
2,041,605 + AO353_09315 0.32 -0.8
2,041,605 + AO353_09315 0.32 -0.4
2,041,606 - AO353_09315 0.32 -0.0
2,041,606 - AO353_09315 0.32 -1.6
2,041,606 - AO353_09315 0.32 +1.5
2,041,606 - AO353_09315 0.32 +0.8
2,041,606 - AO353_09315 0.32 -0.4
2,041,606 - AO353_09315 0.32 +0.5
2,041,677 + AO353_09315 0.40 -0.4
2,041,677 + AO353_09315 0.40 +0.6
2,041,677 + AO353_09315 0.40 +0.6
2,041,677 + AO353_09315 0.40 +0.6
2,041,677 + AO353_09315 0.40 +0.7
2,041,678 - AO353_09315 0.40 +0.6
2,041,678 - AO353_09315 0.40 -1.4
2,041,678 - AO353_09315 0.40 -0.2
2,041,678 - AO353_09315 0.40 -0.4
2,041,678 - AO353_09315 0.40 -0.1
2,041,678 - AO353_09315 0.40 +0.2
2,041,678 - AO353_09315 0.40 -0.7
2,041,791 + AO353_09315 0.52 -0.6
2,041,792 - AO353_09315 0.52 -0.8
2,041,792 - AO353_09315 0.52 -0.4
2,041,806 + AO353_09315 0.54 -1.0
2,041,806 + AO353_09315 0.54 +0.6
2,041,806 + AO353_09315 0.54 -0.3
2,041,806 + AO353_09315 0.54 -1.5
2,041,806 + AO353_09315 0.54 +0.8
2,041,806 + AO353_09315 0.54 +0.5
2,041,806 + AO353_09315 0.54 -0.0
2,041,807 - AO353_09315 0.54 -1.2
2,041,807 - AO353_09315 0.54 +0.2
2,041,807 - AO353_09315 0.54 -0.4
2,041,807 - AO353_09315 0.54 +0.7
2,041,807 - AO353_09315 0.54 -0.5
2,041,807 - AO353_09315 0.54 +0.5
2,041,807 - AO353_09315 0.54 +0.5
2,041,807 - AO353_09315 0.54 -0.1
2,041,807 - AO353_09315 0.54 -0.6
2,041,807 - AO353_09315 0.54 -1.3
2,041,807 - AO353_09315 0.54 -0.2
2,041,807 - AO353_09315 0.54 +1.5

Or see this region's nucleotide sequence