Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09300

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09295 and AO353_09300 are separated by 189 nucleotidesAO353_09300 and AO353_09305 are separated by 6 nucleotidesAO353_09305 and AO353_09310 overlap by 4 nucleotides AO353_09295: AO353_09295 - oxidoreductase, at 2,037,810 to 2,038,667 _09295 AO353_09300: AO353_09300 - biopolymer transporter ExbB, at 2,038,857 to 2,039,852 _09300 AO353_09305: AO353_09305 - protein TolR, at 2,039,859 to 2,040,287 _09305 AO353_09310: AO353_09310 - energy transducer TonB, at 2,040,284 to 2,041,033 _09310 Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2037.962 kb on - strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.021 kb on + strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.022 kb on - strand, within AO353_09295at 2038.111 kb on + strand, within AO353_09295at 2038.111 kb on + strand, within AO353_09295at 2038.111 kb on + strand, within AO353_09295at 2038.112 kb on - strand, within AO353_09295at 2038.112 kb on - strand, within AO353_09295at 2038.112 kb on - strand, within AO353_09295at 2038.112 kb on - strand, within AO353_09295at 2038.138 kb on + strand, within AO353_09295at 2038.183 kb on + strand, within AO353_09295at 2038.183 kb on + strand, within AO353_09295at 2038.183 kb on + strand, within AO353_09295at 2038.227 kb on + strand, within AO353_09295at 2038.227 kb on + strand, within AO353_09295at 2038.228 kb on - strand, within AO353_09295at 2038.324 kb on + strand, within AO353_09295at 2038.324 kb on + strand, within AO353_09295at 2038.324 kb on + strand, within AO353_09295at 2038.373 kb on - strand, within AO353_09295at 2038.414 kb on + strand, within AO353_09295at 2038.414 kb on + strand, within AO353_09295at 2038.414 kb on + strand, within AO353_09295at 2038.414 kb on + strand, within AO353_09295at 2038.414 kb on + strand, within AO353_09295at 2038.415 kb on - strand, within AO353_09295at 2038.415 kb on - strand, within AO353_09295at 2038.415 kb on - strand, within AO353_09295at 2038.415 kb on - strand, within AO353_09295at 2038.415 kb on - strand, within AO353_09295at 2038.462 kb on + strand, within AO353_09295at 2038.462 kb on + strand, within AO353_09295at 2038.462 kb on + strandat 2038.462 kb on + strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.463 kb on - strand, within AO353_09295at 2038.471 kb on + strand, within AO353_09295at 2038.471 kb on + strand, within AO353_09295at 2038.471 kb on + strand, within AO353_09295at 2038.471 kb on + strand, within AO353_09295at 2038.472 kb on - strand, within AO353_09295at 2038.472 kb on - strand, within AO353_09295at 2038.472 kb on - strand, within AO353_09295at 2038.472 kb on - strand, within AO353_09295at 2038.472 kb on - strand, within AO353_09295at 2038.690 kb on + strandat 2038.690 kb on + strandat 2038.690 kb on + strandat 2038.691 kb on - strandat 2038.691 kb on - strandat 2038.691 kb on - strandat 2038.691 kb on - strandat 2038.706 kb on + strandat 2038.747 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.825 kb on + strandat 2038.843 kb on + strandat 2038.843 kb on + strandat 2038.843 kb on + strandat 2038.843 kb on + strandat 2038.843 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strandat 2039.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,037,962 - AO353_09295 0.18 -0.4
2,038,021 + AO353_09295 0.25 +1.2
2,038,021 + AO353_09295 0.25 -0.6
2,038,021 + AO353_09295 0.25 -0.0
2,038,021 + AO353_09295 0.25 +0.5
2,038,021 + AO353_09295 0.25 +0.7
2,038,021 + AO353_09295 0.25 +1.2
2,038,021 + AO353_09295 0.25 -1.3
2,038,021 + AO353_09295 0.25 +2.1
2,038,021 + AO353_09295 0.25 -0.5
2,038,021 + AO353_09295 0.25 -0.5
2,038,022 - AO353_09295 0.25 -0.0
2,038,022 - AO353_09295 0.25 +0.8
2,038,022 - AO353_09295 0.25 +0.5
2,038,022 - AO353_09295 0.25 +0.2
2,038,022 - AO353_09295 0.25 +0.8
2,038,022 - AO353_09295 0.25 -0.2
2,038,022 - AO353_09295 0.25 +0.3
2,038,022 - AO353_09295 0.25 -0.8
2,038,022 - AO353_09295 0.25 -1.4
2,038,022 - AO353_09295 0.25 -0.5
2,038,022 - AO353_09295 0.25 -0.0
2,038,022 - AO353_09295 0.25 -0.0
2,038,022 - AO353_09295 0.25 -1.5
2,038,022 - AO353_09295 0.25 -1.2
2,038,022 - AO353_09295 0.25 +0.6
2,038,022 - AO353_09295 0.25 +1.8
2,038,022 - AO353_09295 0.25 +1.8
2,038,022 - AO353_09295 0.25 -0.9
2,038,022 - AO353_09295 0.25 +0.1
2,038,022 - AO353_09295 0.25 +1.6
2,038,022 - AO353_09295 0.25 -0.6
2,038,022 - AO353_09295 0.25 -0.9
2,038,111 + AO353_09295 0.35 -2.1
2,038,111 + AO353_09295 0.35 -0.5
2,038,111 + AO353_09295 0.35 +1.8
2,038,112 - AO353_09295 0.35 -0.4
2,038,112 - AO353_09295 0.35 -0.7
2,038,112 - AO353_09295 0.35 -0.7
2,038,112 - AO353_09295 0.35 +2.1
2,038,138 + AO353_09295 0.38 -0.0
2,038,183 + AO353_09295 0.43 +0.5
2,038,183 + AO353_09295 0.43 -0.7
2,038,183 + AO353_09295 0.43 -0.4
2,038,227 + AO353_09295 0.49 +0.4
2,038,227 + AO353_09295 0.49 -0.5
2,038,228 - AO353_09295 0.49 -1.3
2,038,324 + AO353_09295 0.60 +0.3
2,038,324 + AO353_09295 0.60 +0.5
2,038,324 + AO353_09295 0.60 -1.1
2,038,373 - AO353_09295 0.66 +1.0
2,038,414 + AO353_09295 0.70 -0.5
2,038,414 + AO353_09295 0.70 -2.8
2,038,414 + AO353_09295 0.70 -1.6
2,038,414 + AO353_09295 0.70 -0.0
2,038,414 + AO353_09295 0.70 +1.6
2,038,415 - AO353_09295 0.71 -0.6
2,038,415 - AO353_09295 0.71 +0.8
2,038,415 - AO353_09295 0.71 +0.8
2,038,415 - AO353_09295 0.71 -0.7
2,038,415 - AO353_09295 0.71 +0.3
2,038,462 + AO353_09295 0.76 +2.8
2,038,462 + AO353_09295 0.76 -1.1
2,038,462 + +1.2
2,038,462 + AO353_09295 0.76 -0.2
2,038,463 - AO353_09295 0.76 +1.8
2,038,463 - AO353_09295 0.76 -0.4
2,038,463 - AO353_09295 0.76 +1.6
2,038,463 - AO353_09295 0.76 +1.9
2,038,463 - AO353_09295 0.76 -0.9
2,038,463 - AO353_09295 0.76 -0.4
2,038,463 - AO353_09295 0.76 +0.1
2,038,471 + AO353_09295 0.77 +0.1
2,038,471 + AO353_09295 0.77 +0.8
2,038,471 + AO353_09295 0.77 +1.2
2,038,471 + AO353_09295 0.77 +0.6
2,038,472 - AO353_09295 0.77 +2.1
2,038,472 - AO353_09295 0.77 +0.4
2,038,472 - AO353_09295 0.77 +1.1
2,038,472 - AO353_09295 0.77 -1.2
2,038,472 - AO353_09295 0.77 -0.4
2,038,690 + +1.0
2,038,690 + +1.0
2,038,690 + +1.2
2,038,691 - +1.2
2,038,691 - +0.9
2,038,691 - -0.0
2,038,691 - -1.2
2,038,706 + -0.4
2,038,747 + +0.5
2,038,825 + +0.1
2,038,825 + -0.2
2,038,825 + +0.6
2,038,825 + +0.8
2,038,825 + +2.8
2,038,825 + -0.1
2,038,825 + -0.6
2,038,825 + -0.6
2,038,843 + -0.6
2,038,843 + +0.6
2,038,843 + +0.2
2,038,843 + +1.2
2,038,843 + -0.1
2,039,845 + +1.8
2,039,845 + -0.7
2,039,845 + -0.0
2,039,845 + -0.1
2,039,845 + -0.0

Or see this region's nucleotide sequence