Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08865

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08860 and AO353_08865 are separated by 34 nucleotidesAO353_08865 and AO353_08870 overlap by 4 nucleotidesAO353_08870 and AO353_08875 overlap by 14 nucleotides AO353_08860: AO353_08860 - amino acid ABC transporter substrate-binding protein, at 1,947,086 to 1,947,871 _08860 AO353_08865: AO353_08865 - ABC transporter permease, at 1,947,906 to 1,948,574 _08865 AO353_08870: AO353_08870 - amino acid ABC transporter permease, at 1,948,571 to 1,949,221 _08870 AO353_08875: AO353_08875 - amino acid ABC transporter ATP-binding protein, at 1,949,208 to 1,949,945 _08875 Position (kb) 1947 1948 1949Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 1946.921 kb on + strandat 1946.922 kb on - strandat 1946.992 kb on + strandat 1946.992 kb on + strandat 1946.993 kb on - strandat 1946.993 kb on - strandat 1946.993 kb on - strandat 1947.000 kb on + strandat 1947.438 kb on - strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.449 kb on + strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.450 kb on - strand, within AO353_08860at 1947.508 kb on + strand, within AO353_08860at 1947.509 kb on - strand, within AO353_08860at 1947.509 kb on - strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.620 kb on + strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.621 kb on - strand, within AO353_08860at 1947.737 kb on + strand, within AO353_08860at 1947.737 kb on + strand, within AO353_08860at 1947.738 kb on - strand, within AO353_08860at 1947.738 kb on - strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.771 kb on + strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860at 1947.772 kb on - strand, within AO353_08860at 1947.889 kb on - strandat 1947.889 kb on - strandat 1948.083 kb on + strand, within AO353_08865at 1948.083 kb on + strand, within AO353_08865at 1948.083 kb on + strand, within AO353_08865at 1948.084 kb on - strand, within AO353_08865at 1948.084 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.529 kb on - strandat 1948.551 kb on + strandat 1948.551 kb on + strandat 1948.552 kb on - strandat 1948.552 kb on - strandat 1948.696 kb on + strand, within AO353_08870at 1948.696 kb on + strand, within AO353_08870at 1948.696 kb on + strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.858 kb on + strand, within AO353_08870at 1948.859 kb on - strand, within AO353_08870at 1948.868 kb on + strand, within AO353_08870at 1948.868 kb on + strand, within AO353_08870at 1948.869 kb on - strand, within AO353_08870at 1949.130 kb on - strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.151 kb on - strand, within AO353_08870at 1949.220 kb on - strandat 1949.220 kb on - strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.245 kb on - strandat 1949.403 kb on + strand, within AO353_08875at 1949.403 kb on + strand, within AO353_08875at 1949.403 kb on + strand, within AO353_08875at 1949.404 kb on - strand, within AO353_08875

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,946,921 + -0.4
1,946,922 - +1.6
1,946,992 + +0.2
1,946,992 + +1.0
1,946,993 - +0.4
1,946,993 - +1.6
1,946,993 - +0.8
1,947,000 + -0.2
1,947,438 - AO353_08860 0.45 +1.2
1,947,449 + AO353_08860 0.46 +1.0
1,947,449 + AO353_08860 0.46 -0.1
1,947,449 + AO353_08860 0.46 -0.9
1,947,449 + AO353_08860 0.46 -0.6
1,947,450 - AO353_08860 0.46 +1.5
1,947,450 - AO353_08860 0.46 -0.6
1,947,450 - AO353_08860 0.46 +0.2
1,947,508 + AO353_08860 0.54 -1.0
1,947,509 - AO353_08860 0.54 +0.4
1,947,509 - AO353_08860 0.54 +0.4
1,947,620 + AO353_08860 0.68 -0.0
1,947,620 + AO353_08860 0.68 -0.0
1,947,620 + AO353_08860 0.68 +0.9
1,947,621 - AO353_08860 0.68 -0.0
1,947,621 - AO353_08860 0.68 -0.9
1,947,621 - AO353_08860 0.68 -0.2
1,947,737 + AO353_08860 0.83 +0.2
1,947,737 + AO353_08860 0.83 -0.3
1,947,738 - AO353_08860 0.83 -0.9
1,947,738 - AO353_08860 0.83 +0.2
1,947,771 + AO353_08860 0.87 -1.0
1,947,771 + AO353_08860 0.87 -0.8
1,947,771 + AO353_08860 0.87 +0.3
1,947,772 - AO353_08860 0.87 +1.8
1,947,772 - AO353_08860 0.87 +2.3
1,947,772 - AO353_08860 0.87 -0.8
1,947,889 - -0.4
1,947,889 - +0.4
1,948,083 + AO353_08865 0.26 +1.4
1,948,083 + AO353_08865 0.26 -0.8
1,948,083 + AO353_08865 0.26 -0.6
1,948,084 - AO353_08865 0.27 +0.9
1,948,084 - AO353_08865 0.27 -0.4
1,948,477 - AO353_08865 0.85 -0.7
1,948,477 - AO353_08865 0.85 +0.1
1,948,477 - AO353_08865 0.85 +0.4
1,948,477 - AO353_08865 0.85 -1.1
1,948,477 - AO353_08865 0.85 -0.3
1,948,477 - AO353_08865 0.85 -0.0
1,948,477 - AO353_08865 0.85 -1.8
1,948,477 - AO353_08865 0.85 +6.1
1,948,497 + AO353_08865 0.88 -0.0
1,948,497 + AO353_08865 0.88 +1.5
1,948,497 + AO353_08865 0.88 +0.2
1,948,497 + AO353_08865 0.88 +2.2
1,948,497 + AO353_08865 0.88 -1.0
1,948,497 + AO353_08865 0.88 -0.0
1,948,497 + AO353_08865 0.88 +1.1
1,948,498 - AO353_08865 0.88 -2.6
1,948,498 - AO353_08865 0.88 -1.6
1,948,498 - AO353_08865 0.88 -0.7
1,948,498 - AO353_08865 0.88 +1.5
1,948,498 - AO353_08865 0.88 -0.9
1,948,529 - +0.6
1,948,551 + -0.3
1,948,551 + -0.2
1,948,552 - +0.4
1,948,552 - +1.4
1,948,696 + AO353_08870 0.19 -0.8
1,948,696 + AO353_08870 0.19 +0.2
1,948,696 + AO353_08870 0.19 -0.5
1,948,697 - AO353_08870 0.19 +0.4
1,948,697 - AO353_08870 0.19 -0.4
1,948,697 - AO353_08870 0.19 -0.4
1,948,697 - AO353_08870 0.19 -0.1
1,948,736 + AO353_08870 0.25 +1.1
1,948,736 + AO353_08870 0.25 +0.4
1,948,736 + AO353_08870 0.25 +0.5
1,948,736 + AO353_08870 0.25 -1.1
1,948,736 + AO353_08870 0.25 +1.4
1,948,736 + AO353_08870 0.25 +0.4
1,948,736 + AO353_08870 0.25 -0.2
1,948,736 + AO353_08870 0.25 -0.5
1,948,736 + AO353_08870 0.25 +0.4
1,948,736 + AO353_08870 0.25 -0.6
1,948,737 - AO353_08870 0.25 -1.0
1,948,737 - AO353_08870 0.25 -0.6
1,948,737 - AO353_08870 0.25 -0.9
1,948,737 - AO353_08870 0.25 +1.4
1,948,737 - AO353_08870 0.25 -0.2
1,948,737 - AO353_08870 0.25 +1.3
1,948,737 - AO353_08870 0.25 -0.3
1,948,737 - AO353_08870 0.25 +1.2
1,948,858 + AO353_08870 0.44 +0.0
1,948,859 - AO353_08870 0.44 +0.2
1,948,868 + AO353_08870 0.46 -0.7
1,948,868 + AO353_08870 0.46 -0.0
1,948,869 - AO353_08870 0.46 -0.2
1,949,130 - AO353_08870 0.86 -0.6
1,949,150 + AO353_08870 0.89 +0.4
1,949,150 + AO353_08870 0.89 +0.8
1,949,150 + AO353_08870 0.89 +0.1
1,949,151 - AO353_08870 0.89 +1.0
1,949,220 - -0.8
1,949,220 - +1.4
1,949,237 + -1.0
1,949,237 + +0.9
1,949,237 + +0.4
1,949,237 + +0.8
1,949,237 + -0.2
1,949,237 + +0.2
1,949,237 + +0.2
1,949,237 + -0.2
1,949,237 + +0.1
1,949,237 + +0.8
1,949,238 - -0.9
1,949,238 - -0.4
1,949,238 - -1.5
1,949,238 - -1.0
1,949,238 - -1.3
1,949,238 - +2.4
1,949,238 - -0.5
1,949,238 - -0.0
1,949,238 - +0.4
1,949,238 - -0.0
1,949,238 - +0.2
1,949,238 - +1.0
1,949,238 - -0.2
1,949,238 - -0.7
1,949,238 - -0.0
1,949,241 + -0.2
1,949,241 + +0.6
1,949,241 + +1.4
1,949,241 + -0.2
1,949,241 + -0.0
1,949,241 + -0.8
1,949,241 + -2.0
1,949,241 + +0.6
1,949,242 - +0.8
1,949,242 - +1.0
1,949,242 - +0.0
1,949,242 - -1.6
1,949,242 - -0.5
1,949,242 - +0.6
1,949,245 - +0.8
1,949,403 + AO353_08875 0.26 -0.1
1,949,403 + AO353_08875 0.26 -0.4
1,949,403 + AO353_08875 0.26 +0.4
1,949,404 - AO353_08875 0.27 -0.6

Or see this region's nucleotide sequence